CX307912

Overview
NameCX307912
Unique NameCX307912
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307912 vs. ExPASy Swiss-Prot
Match: FRI_MALXI (Ferritin, chloroplastic OS=Malus xiaojinensis PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.565e-27
Identity = 58/98 (59.18%), Postives = 69/98 (70.41%), Query Frame = 1
Query:  118 VDANSMPLTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAXXXXXXXXXXREHAEKFME 411
            V A+++PLTGV+F+PFEEVKK             ARQ Y DECE+AINEQINVEYN SYVYH+L+AYFDRDN+AL+G A          REHAEK M+
Sbjct:   47 VCASTVPLTGVIFEPFEEVKKSELAVPTAPQVSLARQNYADECESAINEQINVEYNASYVYHSLFAYFDRDNVALKGFAKFFKESSEEEREHAEKLMK 144          
BLAST of CX307912 vs. ExPASy Swiss-Prot
Match: FRI1_SOYBN (Ferritin-1, chloroplastic OS=Glycine max PE=1 SV=4)

HSP 1 Score: 120.553 bits (301), Expect = 2.565e-27
Identity = 58/98 (59.18%), Postives = 69/98 (70.41%), Query Frame = 1
Query:  118 VDANSMPLTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAXXXXXXXXXXREHAEKFME 411
            V A+++PLTGV+F+PFEEVKK             ARQ Y DECE+AINEQINVEYN SYVYH+L+AYFDRDN+AL+G A          REHAEK M+
Sbjct:   47 VCASTVPLTGVIFEPFEEVKKSELAVPTAPQVSLARQNYADECESAINEQINVEYNASYVYHSLFAYFDRDNVALKGFAKFFKESSEEEREHAEKLMK 144          
BLAST of CX307912 vs. ExPASy Swiss-Prot
Match: FRI3_ARATH (Ferritin-3, chloroplastic OS=Arabidopsis thaliana GN=FER3 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.273e-26
Identity = 60/104 (57.69%), Postives = 68/104 (65.38%), Query Frame = 1
Query:  100 LKVSAAVDANSMPLTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAXXXXXXXXXXREHAEKFME 411
            L+ S +    +  L+GVVF+PFEEVKKE            AR  Y  ECEAA+NEQINVEYNVSYVYHALYAYFDRDN+AL+GLA          REHAE  ME
Sbjct:   47 LRASKSSTTTTSTLSGVVFEPFEEVKKEMDLVPSGQQLSLARHLYSPECEAAVNEQINVEYNVSYVYHALYAYFDRDNVALKGLAKFFKESSVEEREHAELLME 150          
BLAST of CX307912 vs. ExPASy Swiss-Prot
Match: FRI1_PEA (Ferritin-1, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.273e-26
Identity = 56/98 (57.14%), Postives = 67/98 (68.37%), Query Frame = 1
Query:  118 VDANSMPLTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAXXXXXXXXXXREHAEKFME 411
            V A + PLTGV+F+PFEEVKK+            ARQ + DECE+ INEQINVEYN SYVYH+L+AYFDRDN+AL+G A          REHAEK M+
Sbjct:   45 VSATTAPLTGVIFEPFEEVKKDYLAVPSVPLVSLARQNFADECESVINEQINVEYNASYVYHSLFAYFDRDNVALKGFAKFFKESSEEHREHAEKLMK 142          
BLAST of CX307912 vs. ExPASy Swiss-Prot
Match: FRI2_ARATH (Ferritin-2, chloroplastic OS=Arabidopsis thaliana GN=FER2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.836e-26
Identity = 67/134 (50.00%), Postives = 78/134 (58.21%), Query Frame = 1
Query:   10 AGLTTGSSCYSKSNASLVKLGGILPRTKRSLKVSAAVDANSMPLTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAXXXXXXXXXXREHAEKFME 411
            +G T G + +  S  S   L    P   R   V AA   N+  LTGVVF+PFEEVKKE            AR K+ D+ E+AIN+QINVEYNVSYVYHALYAYFDRDN+ L+G A          R HAE FME
Sbjct:   14 SGYTGGGNLFPPSRNSSNLL--FSPSGSR-FSVQAAKGTNTKSLTGVVFEPFEEVKKEMELVPTTPFVSLARHKFSDDSESAINDQINVEYNVSYVYHALYAYFDRDNVGLKGFAKFFNDSSLEERGHAEMFME 144          
BLAST of CX307912 vs. ExPASy Swiss-Prot
Match: FRI2_MAIZE (Ferritin-2, chloroplastic OS=Zea mays GN=FER2 PE=1 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 4.837e-26
Identity = 59/109 (54.13%), Postives = 69/109 (63.30%), Query Frame = 1
Query:   85 RTKRSLKVSAAVDANSMPLTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAXXXXXXXXXXREHAEKFME 411
            R+  SL  +AA       L+GVVFQPFEE+K E            AR K+ D+CEAAINEQINVEYN SY YH+L+AYFDRDN+AL+G A          REHAEK ME
Sbjct:   34 RSGVSLSAAAAAGKGKEVLSGVVFQPFEEIKGELALVPQSPDRSLARHKFVDDCEAAINEQINVEYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEEREHAEKLME 142          
BLAST of CX307912 vs. ExPASy Swiss-Prot
Match: FRI2_SOYBN (Ferritin-2, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.838e-25
Identity = 60/106 (56.60%), Postives = 75/106 (70.75%), Query Frame = 1
Query:   94 RSLKVSAAVDANSMPLTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAXXXXXXXXXXREHAEKFME 411
            RS +V AA +A + PL GV+F+PF+E+KK+          X ARQ Y D+ E+AINEQINVEYNVSYVYHAL+AYFDRDNIAL+GLA          REHAE+ ++
Sbjct:   42 RSSRVCAASNAPA-PLAGVIFEPFQELKKDYLAVPIAHNVXLARQNYADDSESAINEQINVEYNVSYVYHALFAYFDRDNIALKGLAKFFKESSEEEREHAEQLIK 146          
BLAST of CX307912 vs. ExPASy Swiss-Prot
Match: FRI1_MAIZE (Ferritin-1, chloroplastic OS=Zea mays GN=FER1 PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 2.032e-24
Identity = 53/91 (58.24%), Postives = 62/91 (68.13%), Query Frame = 1
Query:  139 LTGVVFQPFEEVKKEXXXXXXXXXXXXARQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAXXXXXXXXXXREHAEKFME 411
            L+GVVFQPFEE+K E            AR K+ D+CEAA+NEQINVEYN SY YH+L+AYFDRDN+AL+G A          REHAEK ME
Sbjct:   55 LSGVVFQPFEEIKGELALVPQSPDKSLARHKFVDDCEAALNEQINVEYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEEREHAEKLME 145          
BLAST of CX307912 vs. ExPASy Swiss-Prot
Match: FRI2_RANCA (Ferritin, middle subunit OS=Rana catesbeiana PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 5.192e-12
Identity = 30/63 (47.62%), Postives = 41/63 (65.08%), Query Frame = 1
Query:  223 RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAXXXXXXXXXXREHAEKFME 411
            RQ Y  +CEAA+N  +N+E   SY Y ++YA+FDRD++AL  +A          REHAEKFM+
Sbjct:    6 RQNYHSDCEAAVNRMLNLELYASYTYSSMYAFFDRDDVALHNVAEFFKEHSHEEREHAEKFMK 68          
BLAST of CX307912 vs. ExPASy Swiss-Prot
Match: FRIH_CHICK (Ferritin heavy chain OS=Gallus gallus GN=FTH PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.577e-11
Identity = 32/63 (50.79%), Postives = 40/63 (63.49%), Query Frame = 1
Query:  223 RQKYEDECEAAINEQINVEYNVSYVYHALYAYFDRDNIALRGLAXXXXXXXXXXREHAEKFME 411
            RQ Y  +CEAAIN QIN+E   SYVY ++  YFDRD++AL+  A          REHAEK M+
Sbjct:    9 RQNYHQDCEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMK 71          
The following BLAST results are available for this feature:
BLAST of CX307912 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
FRI_MALXI2.565e-2759.18Ferritin, chloroplastic OS=Malus xiaojinensis PE=3... [more]
FRI1_SOYBN2.565e-2759.18Ferritin-1, chloroplastic OS=Glycine max PE=1 SV=4[more]
FRI3_ARATH1.273e-2657.69Ferritin-3, chloroplastic OS=Arabidopsis thaliana ... [more]
FRI1_PEA1.273e-2657.14Ferritin-1, chloroplastic OS=Pisum sativum PE=1 SV... [more]
FRI2_ARATH2.836e-2650.00Ferritin-2, chloroplastic OS=Arabidopsis thaliana ... [more]
FRI2_MAIZE4.837e-2654.13Ferritin-2, chloroplastic OS=Zea mays GN=FER2 PE=1... [more]
FRI2_SOYBN1.838e-2556.60Ferritin-2, chloroplastic OS=Glycine max PE=2 SV=1[more]
FRI1_MAIZE2.032e-2458.24Ferritin-1, chloroplastic OS=Zea mays GN=FER1 PE=1... [more]
FRI2_RANCA5.192e-1247.62Ferritin, middle subunit OS=Rana catesbeiana PE=1 ... [more]
FRIH_CHICK2.577e-1150.79Ferritin heavy chain OS=Gallus gallus GN=FTH PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC20003E08SK OF2 Citrus clementina cDNA clone C20003E08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307912 ID=CX307912; Name=CX307912; organism=Citrus clementina; type=EST; length=413bp
AAGCAACTGGCTGGTCTTACAACAGGCTCATCATGTTACTCTAAGTCTAA
TGCTTCTCTTGTGAAATTGGGTGGTATTTTGCCAAGAACGAAGAGGAGTC
TGAAGGTTTCTGCTGCTGTGGACGCCAATAGCATGCCGCTGACCGGGGTC
GTGTTTCAGCCATTCGAAGAGGTCAAGAAAGAGGTTCTTGATGTTCCTGT
TTCCCCTCTGCTTTCACTAGCTCGCCAAAAGTACGAGGACGAGTGTGAGG
CCGCTATCAACGAGCAGATCAATGTGGAATATAATGTCTCATACGTGTAC
CATGCCCTGTATGCGTACTTTGATCGGGATAATATTGCTCTGAGAGGCCT
TGCCAAATTTTTCAAGGAGTCCAGTGAAAAAAAAAGGGAACATGCTGAGA
AGTTTATGGAGTA
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