CX307914

Overview
NameCX307914
Unique NameCX307914
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length412
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307914 vs. ExPASy Swiss-Prot
Match: PEL11_ARATH (Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.693e-29
Identity = 53/71 (74.65%), Postives = 58/71 (81.69%), Query Frame = 3
Query:  198 STERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPG 410
            +  RR L Y SC TGNPIDDCWRCD NW  NR+RLADC IGFG+NAIGGR GR YVVTDP +DDPVNP+PG
Sbjct:   46 NASRRSLAYLSCRTGNPIDDCWRCDPNWETNRQRLADCAIGFGKNAIGGRKGRIYVVTDPANDDPVNPRPG 116          
BLAST of CX307914 vs. ExPASy Swiss-Prot
Match: PEL5_ARATH (Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.329e-28
Identity = 53/77 (68.83%), Postives = 61/77 (79.22%), Query Frame = 3
Query:  180 EMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPG 410
            E++ + +  RR LG  SCGTGNPIDDCWRCD  W KNR+RLADC IGFG++AIGGRDG+ YVVTD  D D VNPKPG
Sbjct:   39 EVNEKINASRRNLGVLSCGTGNPIDDCWRCDPKWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDSSDKDVVNPKPG 115          
BLAST of CX307914 vs. ExPASy Swiss-Prot
Match: PEL12_ARATH (Probable pectate lyase 12 OS=Arabidopsis thaliana GN=At3g53190 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 1.727e-23
Identity = 50/93 (53.76%), Postives = 61/93 (65.59%), Query Frame = 3
Query:  153 NPDEIASMVEMSTRNSTERRKL-------GYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPG 410
            +P+ +A  V+     S  RR+        G   C TGNPIDDCW+CD NW  NR+ LADCGIGFG+ A+GG+ G+FY VTD  DDD VNPKPG
Sbjct:   37 DPELVAYQVQWKVNASITRRQALDTTDQAGSTPCITGNPIDDCWKCDPNWPNNRQGLADCGIGFGQYALGGKGGQFYFVTDSSDDDAVNPKPG 129          
BLAST of CX307914 vs. ExPASy Swiss-Prot
Match: PEL21_ARATH (Putative pectate lyase 21 OS=Arabidopsis thaliana GN=At5g55720 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.258e-22
Identity = 48/90 (53.33%), Postives = 57/90 (63.33%), Query Frame = 3
Query:  144 AVDNPDEIASMVEMSTRNSTERRKLGYFSCGT-GNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPG 410
            A+  P  +  +    T NST        SC   GNPID+CWRCD NW  NRK LADC +GFGR++IGGR G FY VTD  DD+P+NP PG
Sbjct:   21 AIPKPPIVRRLSTTVTSNSTAS------SCSANGNPIDECWRCDENWKDNRKNLADCAVGFGRDSIGGRAGEFYTVTDSGDDNPLNPTPG 104          
BLAST of CX307914 vs. ExPASy Swiss-Prot
Match: PEL13_ARATH (Probable pectate lyase 13 OS=Arabidopsis thaliana GN=PMR6 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.479e-22
Identity = 50/104 (48.08%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  141 HAVDNPDEIASMVEMSTRNSTERRKLGY-------------FSCGTGNPIDDCWRC-DGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPG 410
            H   +PD +A  V  S   S  RR+L                SC TGNPIDDCWRC D +W  NR+RLADC IGFG   +GG++G+ YVVTD  D++P NP PG
Sbjct:   32 HQHPSPDSVALHVIRSVNESLARRQLSSPSSSSSSSSSSSSSSCRTGNPIDDCWRCSDADWSTNRQRLADCSIGFGHGTLGGKNGKIYVVTDSSDNNPTNPTPG 135          
BLAST of CX307914 vs. ExPASy Swiss-Prot
Match: PEL59_SOLLC (Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.788e-20
Identity = 56/135 (41.48%), Postives = 74/135 (54.81%), Query Frame = 3
Query:   18 SVLASVRNEQDVSVSRKMKAESSMNSTMAAKAEVVAEALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFS----CGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPG 410
            S++A + +  +V   R  +A+    +      E V  A ++   D   E+  +    T N++ RR LG       C   NPID CWRCD NW  NRK+LADC +GFG  AIGG+DG FYVVTD   DD  +PKPG
Sbjct:   23 SLMAHIGHYDEVWRRRAEEAKEYARNIYEPHPENVTLAFNQKLRDTMKELKKV--KGTHNNSTRRGLGTKKYTGPCMVTNPIDKCWRCDPNWADNRKKLADCAMGFGSKAIGGKDGEFYVVTD-NSDDYNDPKPG 154          
BLAST of CX307914 vs. ExPASy Swiss-Prot
Match: PEL_TOBAC (Pectate lyase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.976e-19
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = 3
Query:  165 IASMVEMSTRNSTERRKLGYFS----CGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPG 410
            + +   ++T  +  RR+L        C   N ID CWRCD NW +NR+++ADC +GFG NAIGG+ GR YVVTD  DDD V+PKPG
Sbjct:   16 LLTFAALTTATNIPRRQLSNKKYKGPCRAENAIDKCWRCDPNWAENRQKMADCALGFGSNAIGGKLGRIYVVTDNSDDDVVDPKPG 101          
BLAST of CX307914 vs. ExPASy Swiss-Prot
Match: PEL18_SOLLC (Probable pectate lyase P18 OS=Solanum lycopersicum GN=9612 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.976e-19
Identity = 46/98 (46.94%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  117 VVAEALSKHAVDNPDEIASMVEMSTRNSTERRKLGYFSCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPG 410
            ++A  L   ++ +P+ +   V  S   S  RR LGY SCG+GNPID          K     + C IGFG+NAIGG++GR YVVTD  +DDPVNPKPG
Sbjct:   12 LLAPLLVISSIQDPELVVQDVHRSINASLTRRNLGYLSCGSGNPIDRLLAMQPQLGKKSPAFSYCAIGFGKNAIGGKNGRIYVVTDSGNDDPVNPKPG 109          
BLAST of CX307914 vs. ExPASy Swiss-Prot
Match: PEL3_ARATH (Probable pectate lyase 3 OS=Arabidopsis thaliana GN=AT59 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.809e-19
Identity = 38/60 (63.33%), Postives = 44/60 (73.33%), Query Frame = 3
Query:  231 CGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPG 410
            C   NPID+CWRCD NW  NRK+LADC +GFGR   GG+DG  YVV D  D+D +NPKPG
Sbjct:  101 CLAYNPIDNCWRCDRNWANNRKKLADCVLGFGRRTTGGKDGPIYVVKDASDNDLINPKPG 160          
BLAST of CX307914 vs. ExPASy Swiss-Prot
Match: MPAC1_CHAOB (Major pollen allergen Cha o 1 OS=Chamaecyparis obtusa PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.358e-18
Identity = 38/61 (62.30%), Postives = 45/61 (73.77%), Query Frame = 3
Query:  228 SCGTGNPIDDCWRCDGNWHKNRKRLADCGIGFGRNAIGGRDGRFYVVTDPRDDDPVNPKPG 410
            SC + NPID CWR D NW +NR +LADC +GFG +A+GG+ G FY VT   DDDPVNP PG
Sbjct:   18 SCFSDNPIDSCWRGDANWDQNRMKLADCAVGFGSSAMGGKGGAFYTVTS-SDDDPVNPAPG 77          
The following BLAST results are available for this feature:
BLAST of CX307914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PEL11_ARATH4.693e-2974.65Putative pectate lyase 11 OS=Arabidopsis thaliana ... [more]
PEL5_ARATH2.329e-2868.83Probable pectate lyase 5 OS=Arabidopsis thaliana G... [more]
PEL12_ARATH1.727e-2353.76Probable pectate lyase 12 OS=Arabidopsis thaliana ... [more]
PEL21_ARATH7.258e-2253.33Putative pectate lyase 21 OS=Arabidopsis thaliana ... [more]
PEL13_ARATH9.479e-2248.08Probable pectate lyase 13 OS=Arabidopsis thaliana ... [more]
PEL59_SOLLC1.788e-2041.48Probable pectate lyase P59 OS=Solanum lycopersicum... [more]
PEL_TOBAC1.976e-1950.00Pectate lyase OS=Nicotiana tabacum PE=2 SV=1[more]
PEL18_SOLLC1.976e-1946.94Probable pectate lyase P18 OS=Solanum lycopersicum... [more]
PEL3_ARATH9.809e-1963.33Probable pectate lyase 3 OS=Arabidopsis thaliana G... [more]
MPAC1_CHAOB6.358e-1862.30Major pollen allergen Cha o 1 OS=Chamaecyparis obt... [more]

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Properties
Property NameValue
Genbank descriptionC20003E10SK OF2 Citrus clementina cDNA clone C20003E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307914 ID=CX307914; Name=CX307914; organism=Citrus clementina; type=EST; length=412bp
TTTTAATGTTGTTCGTCAGCGTTCTGGCTTCTGTACGTAACGAGCAAGAC
GTCTCTGTTTCCAGGAAGATGAAGGCAGAGAGCTCAATGAACTCAACAAT
GGCGGCCAAGGCTGAAGTAGTAGCCGAGGCCTTGAGTAAACATGCAGTTG
ATAACCCAGATGAAATTGCTTCAATGGTTGAGATGAGCACCCGCAACAGC
ACTGAAAGGAGAAAGTTGGGGTACTTCTCCTGTGGTACTGGTAATCCCAT
TGATGACTGCTGGCGCTGTGACGGCAACTGGCACAAGAACCGCAAGCGTC
TTGCAGACTGTGGGATTGGTTTTGGAAGAAATGCCATTGGTGGCCGTGAT
GGTCGCTTCTATGTTGTCACTGACCCAAGGGATGATGACCCTGTTAACCC
CAAACCTGGAAC
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