CX307917

Overview
NameCX307917
Unique NameCX307917
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length380
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307917 vs. ExPASy Swiss-Prot
Match: GSTF1_ORYSJ (Probable glutathione S-transferase GSTF1 OS=Oryza sativa subsp. japonica GN=GSTF1 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.870e-19
Identity = 51/125 (40.80%), Postives = 73/125 (58.40%), Query Frame = 1
Query:    1 QYIAQEFPDKGTQLTCPG--KPIAPLLVWKEVEALQFDPPSSKLNWELVYKP-MFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAW 366
            +YI +++  +   L   G  +  A + VW EVE  Q++   S + +E +  P M G+ T+   V+E+  KL K+L+VYEARLSQS YLA D  +  DL+H P     +GTP   LFD+ PHV AW
Sbjct:   73 KYILRKYKTREADLLREGNLREAAMVDVWTEVETHQYNSAISPIVYECIINPAMRGIPTNQKVVDESAEKLKKVLEVYEARLSQSTYLAGDFVSFADLNHFPYTFYFMGTPYASLFDSYPHVKAW 197          
BLAST of CX307917 vs. ExPASy Swiss-Prot
Match: GSTF3_ARATH (Glutathione S-transferase ERD13 OS=Arabidopsis thaliana GN=ERD13 PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 2.872e-18
Identity = 53/127 (41.73%), Postives = 76/127 (59.84%), Query Frame = 1
Query:    1 QYIAQEFPDKGTQLTCPGKPI---APLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKK--LFDARPHVSAW 366
            +YIA+++  +G  L   GK I     +  W +VEA  + PP   L   +V+ P+ G   D   ++E+E KLA++LDVYEA+LS+++YLA D  +L DL HLP    L+G P+ K  L   R HVSAW
Sbjct:   71 RYIAEKYRSQGPDLL--GKTIEERGQVEQWLDVEATSYHPPLLALTLNIVFAPLMGFPADEKVIKESEEKLAEVLDVYEAQLSKNEYLAGDFVSLADLAHLPFTEYLVG-PIGKAHLIKDRKHVSAW 194          
BLAST of CX307917 vs. ExPASy Swiss-Prot
Match: GSTF1_MAIZE (Glutathione S-transferase 1 OS=Zea mays GN=GST1 PE=1 SV=4)

HSP 1 Score: 89.7373 bits (221), Expect = 4.899e-18
Identity = 45/97 (46.39%), Postives = 61/97 (62.89%), Query Frame = 1
Query:   76 VWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAW 366
            VW EVEA Q+    + + ++++  PM G TTD   V+EN  KL K+L+VYEARL++ KYLA D  +L DL+H+     L  TP   + DA PHV AW
Sbjct:   97 VWIEVEANQYTAALNPILFQVLISPMLGGTTDQKVVDENLEKLKKVLEVYEARLTKCKYLAGDFLSLADLNHVSVTLCLFATPYASVLDAYPHVKAW 193          
BLAST of CX307917 vs. ExPASy Swiss-Prot
Match: GSTF2_ORYSJ (Probable glutathione S-transferase GSTF2 OS=Oryza sativa subsp. japonica GN=GSTF2 PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 5.416e-17
Identity = 47/109 (43.12%), Postives = 65/109 (59.63%), Query Frame = 1
Query:   55 KPIAPLLVWKEVEALQFDPPSSKLNWELVYKPM-FGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAADI 378
            K  A + VW EVE+ Q+ P  + + ++ + +PM FG   D   VEEN  KL K+L+VYEARL++ KYLA D  ++ DL H+     L  TP   + DA PHV AW  D+
Sbjct:   90 KESAMVDVWLEVESNQYTPALNPILFQCLIRPMMFGAPPDEKVVEENLEKLKKVLEVYEARLTKCKYLAGDYISVADLSHVAGTVCLGATPHASVLDAYPHVKAWWTDL 198          
BLAST of CX307917 vs. ExPASy Swiss-Prot
Match: GSTF4_MAIZE (Glutathione S-transferase 4 OS=Zea mays GN=GST4 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.821e-16
Identity = 44/97 (45.36%), Postives = 56/97 (57.73%), Query Frame = 1
Query:   76 VWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAW 366
            VW EVEA Q  PP+  +  E V+ P  G   + A V+EN  KL K+L+VYEARL+   YLA D  +L DL     ++ L+ T    L  A PHVSAW
Sbjct:   99 VWLEVEAHQLSPPAIAIVVECVFAPFLGRERNQAVVDENVEKLKKVLEVYEARLATCTYLAGDFLSLADLSPFTIMHCLMATEYAALVHALPHVSAW 195          
BLAST of CX307917 vs. ExPASy Swiss-Prot
Match: GSTF7_ARATH (Glutathione S-transferase OS=Arabidopsis thaliana GN=At3g03190 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.475e-14
Identity = 48/130 (36.92%), Postives = 71/130 (54.62%), Query Frame = 1
Query:    1 QYIAQEFPDKGTQL---TCPGKPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLG-TPVKKLFDARPHVSAWAADI 378
            +Y A ++ D+GT L   T  G+ I     W EVE   F   +  L   +V+KP  G   D A VEE + K  K+LDVYE RL+ ++YL  D FTL DL H+P +  ++  T +  L  +R +++ W  +I
Sbjct:   72 RYYATKYADQGTDLLGKTLEGRAIVDQ--WVEVENNYFYAVALPLVMNVVFKPKSGKPCDVALVEELKVKFDKVLDVYENRLATNRYLGGDEFTLADLSHMPGMRYIMNETSLSGLVTSRENLNRWWNEI 199          
BLAST of CX307917 vs. ExPASy Swiss-Prot
Match: GSTF1_WHEAT (Glutathione S-transferase 1 OS=Triticum aestivum GN=GSTA1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.516e-14
Identity = 42/106 (39.62%), Postives = 60/106 (56.60%), Query Frame = 1
Query:   61 IAPLLVWKEVEALQFDPPSSKLNWELVYKPMF----GMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAW 366
            +A + VW EVEA Q+ P  S + +E +  P      G   +   V+E+  +L  +L +YEARL +S+YLA DS T  DL+H+P     + TP  K+FD  P V AW
Sbjct:   97 LAMVDVWTEVEAQQYYPAISPVVFECIIIPFIIPGGGAAPNQTVVDESLERLRGVLGIYEARLEKSRYLAGDSITFADLNHIPFTFYFMTTPYAKVFDDYPKVKAW 202          
BLAST of CX307917 vs. ExPASy Swiss-Prot
Match: GSTF2_WHEAT (Glutathione S-transferase 2 OS=Triticum aestivum GN=GSTA2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.605e-14
Identity = 41/106 (38.68%), Postives = 60/106 (56.60%), Query Frame = 1
Query:   61 IAPLLVWKEVEALQFDPPSSKLNWELVYKPMF----GMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAW 366
            +A + VW EVEA Q+ P  S + +E +  P      G   +   V+E+  +L  +L +YEARL +S+YLA DS +  DL+H+P     + TP  K+FD  P V AW
Sbjct:   97 LAMVDVWTEVEAQQYYPAISPVVFECIIIPFIIPGGGAAPNQTVVDESLERLRGVLGIYEARLEKSRYLAGDSISFADLNHIPFTFYFMTTPYAKVFDEYPKVKAW 202          
BLAST of CX307917 vs. ExPASy Swiss-Prot
Match: GSTF5_ARATH (Glutathione S-transferase PM239X14 OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.526e-11
Identity = 44/126 (34.92%), Postives = 65/126 (51.59%), Query Frame = 1
Query:    1 QYIAQEFPDKGTQLTCPGKPIAPLLVWK--EVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENEAKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPVKKLFDARPHVSAWAA 372
            +Y+  ++    + L  P  P A  L  +   VE   FDPP+S L +E V+  M G+ T+    ++    L   +D YE  LS+ KYLA + FTL DL HLP    ++      + D++PHV AW A
Sbjct:   75 RYLVAKYGKGSSLLPSPSDPKAYGLFEQAASVEYSSFDPPASSLAYERVFAGMRGLKTNEELAKKYVDTLNAKMDGYERILSKQKYLAGNDFTLADLFHLP-YGAMVAQLEPTVLDSKPHVKAWWA 199          
The following BLAST results are available for this feature:
BLAST of CX307917 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
GSTF1_ORYSJ9.870e-1940.80Probable glutathione S-transferase GSTF1 OS=Oryza ... [more]
GSTF3_ARATH2.872e-1841.73Glutathione S-transferase ERD13 OS=Arabidopsis tha... [more]
GSTF1_MAIZE4.899e-1846.39Glutathione S-transferase 1 OS=Zea mays GN=GST1 PE... [more]
GSTF2_ORYSJ5.416e-1743.12Probable glutathione S-transferase GSTF2 OS=Oryza ... [more]
GSTF4_MAIZE7.821e-1645.36Glutathione S-transferase 4 OS=Zea mays GN=GST4 PE... [more]
GSTF7_ARATH1.475e-1436.92Glutathione S-transferase OS=Arabidopsis thaliana ... [more]
GSTF1_WHEAT2.516e-1439.62Glutathione S-transferase 1 OS=Triticum aestivum G... [more]
GSTF2_WHEAT5.605e-1438.68Glutathione S-transferase 2 OS=Triticum aestivum G... [more]
GSTF5_ARATH1.526e-1134.92Glutathione S-transferase PM239X14 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC20003F02SK OF2 Citrus clementina cDNA clone C20003F02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307917 ID=CX307917; Name=CX307917; organism=Citrus clementina; type=EST; length=380bp
CAATACATCGCCCAGGAGTTTCCAGACAAAGGCACCCAGTTAACATGCCC
AGGCAAGCCCATCGCCCCGTTATTGGTATGGAAGGAGGTGGAGGCACTCC
AGTTCGACCCCCCATCATCGAAGCTCAACTGGGAGCTCGTGTACAAGCCA
ATGTTTGGAATGACCACTGATCCAGCTGCGGTTGAAGAAAATGAAGCTAA
GCTTGCCAAAATTTTAGATGTTTACGAGGCCCGTTTGTCTCAGTCCAAAT
ACTTGGCGTGCGACAGCTTCACCTTGGTCGATTTGCATCATCTCCCCAAT
ATTAATTTGTTGTTGGGGACGCCTGTCAAGAAGCTGTTTGATGCACGCCC
CCATGTTAGCGCATGGGCAGCTGATATCAC
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