CX307949

Overview
NameCX307949
Unique NameCX307949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length530
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_METNO (Cytochrome c-type biogenesis protein ccmE OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=ccmE PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.022e-18
Identity = 62/158 (39.24%), Postives = 81/158 (51.27%), Query Frame = 1
Query:   46 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEK 519
            + RRL    +  + +A  + +VL   +  +VF+ +PSE     Q+     +FRLGGLV EGSV        + FVVTD    + VRY G LPDLFREG  VV EG ++P                        F A  VLAKHDE YMP+EVA A++K
Sbjct:    4 KQRRLMLIGVCGAVLAVALGLVLWAMRGTIVFFRSPSEIAS--QAVAPGVRFRLGGLVQEGSVQR-GPDGRVAFVVTDNGATVPVRYQGLLPDLFREGQGVVAEGMLEP---------------------GGMFRADTVLAKHDETYMPREVADALKK 137          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_POLNA (Cytochrome c-type biogenesis protein ccmE OS=Polaromonas naphthalenivorans (strain CJ2) GN=ccmE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.178e-17
Identity = 53/138 (38.41%), Postives = 71/138 (51.45%), Query Frame = 1
Query:  106 IVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEK 519
            +VL+ FQ  LVF+ TPS+        P    FR+GG+V  GS+   A    + F+VTD    + V Y GSLPDLF+EG  VV +G +                     + D  F A +VLAKHDE YMP E A A+++
Sbjct:   24 LVLSAFQKNLVFFFTPSQVAAG--EAPRNRSFRVGGMVEVGSIERQADGVTVSFLVTDTAQRLRVNYRGSLPDLFKEGKGVVAQGKL---------------------TADQLFVADEVLAKHDENYMPPEAAYALKQ 138          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_BORBR (Cytochrome c-type biogenesis protein ccmE OS=Bordetella bronchiseptica GN=ccmE PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.178e-17
Identity = 59/158 (37.34%), Postives = 76/158 (48.10%), Query Frame = 1
Query:   46 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEK 519
            + RR    A     +A    +VLN  +  LVF+ +P++        PS   FR+GGLV  GSV   A    + FVVTD V ++ V Y G LP LFREG  VVV G +                       D  F AT+VLAKHDE YMP + A A+ +
Sbjct:    5 RGRRALLIAGGVGLLALAAALVLNALRSNLVFFFSPTQV--HAHEAPSSGSFRVGGLVRAGSVERAADGLTLRFVVTDTVREVPVAYTGLLPALFREGKGVVVAGNM---------------------GADGVFRATEVLAKHDENYMPPQAADALRQ 139          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_METPP (Cytochrome c-type biogenesis protein ccmE OS=Methylibium petroleiphilum (strain PM1) GN=ccmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.539e-17
Identity = 58/138 (42.03%), Postives = 71/138 (51.45%), Query Frame = 1
Query:  106 IVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEK 519
            +VLN FQ  LVF+ +P++   K    P    FRLGGLV  GSV        + FVVTD V  I VRY G LPDLF+EG  VV +G +                       D  F A +VLAKHDE YMP E A A+++
Sbjct:   24 LVLNAFQSNLVFFYSPAQVAAK--EAPVGRAFRLGGLVDGGSVQR--DGLVVRFVVTDTVKSIPVRYQGILPDLFKEGKGVVAQGQL---------------------GDDGVFVAREVLAKHDENYMPPEAAEALQR 136          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_METEP (Cytochrome c-type biogenesis protein ccmE OS=Methylobacterium extorquens (strain PA1) GN=ccmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.539e-17
Identity = 60/157 (38.22%), Postives = 82/157 (52.23%), Query Frame = 1
Query:   46 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIE 516
            +SRRL   A   + +A  + ++L+     +VF+ +P+E     Q  P   +FRLGGLV +GSV        +EF VTD    + V+Y G LPDLFREG  +V EG     T ++  V                F A  VLAKHDE YMP+EVA A++
Sbjct:    4 KSRRLILIAACGAVLALALGLILSAMSGSIVFFRSPAEVAA--QGVPPGTRFRLGGLVKDGSVKR-GPDQNVEFAVTDTNATVPVQYRGLLPDLFREGQGIVAEG-----TLDVGGV----------------FRADTVLAKHDENYMPREVADALK 136          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME2_PSEAE (Cytochrome c-type biogenesis protein ccmE OS=Pseudomonas aeruginosa GN=ccmE PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.539e-17
Identity = 57/161 (35.40%), Postives = 78/161 (48.45%), Query Frame = 1
Query:   46 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKK 528
            ++RR+       S +     +VLN FQ  LVF+ TPS+        P +  FR+GG+V  GS+        ++FV+TD V  I V Y G LPDLF EG  VVV+G +                          F A +VLAKHDE YMP E   A+++ +K
Sbjct:    4 RNRRIALIVAGLSALGIATALVLNAFQSNLVFFFTPSQV--SAGEAPLERTFRVGGMVERGSLKRQRGELAVQFVITDTVKAIPVTYSGILPDLFSEGKGVVVQGRLDSAG---------------------LFRAEEVLAKHDENYMPPEAQHALDEVQK 141          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_BORPA (Cytochrome c-type biogenesis protein ccmE OS=Bordetella parapertussis GN=ccmE PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.428e-17
Identity = 58/158 (36.71%), Postives = 75/158 (47.47%), Query Frame = 1
Query:   46 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEK 519
            + RR    A     +A    +VLN  +  LVF+ +P++        PS   FR+GGLV  GSV   A    + FVVTD V ++ V Y G LP LFREG  VVV G                         D  F AT+VLAKH+E YMP + A A+ +
Sbjct:    5 RGRRALLIAGGVGLLALAAALVLNALRSNLVFFFSPTQV--HAHEAPSSGSFRVGGLVRAGSVERAADGLTLRFVVTDTVREVPVAYTGLLPALFREGKGVVVAG---------------------TMGADGVFRATEVLAKHNENYMPPQAADALRQ 139          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_GLUOX (Cytochrome c-type biogenesis protein ccmE OS=Gluconobacter oxydans GN=ccmE PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.477e-17
Identity = 56/165 (33.94%), Postives = 83/165 (50.30%), Query Frame = 1
Query:   46 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSK--NKFRLGGLVLEGSV--AHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKK 528
            ++RRLW      +C+     + L  F   +VF++ PS+     ++NP       RLGG+V+ GS+   +   +    F VTD    + V Y G LPDLFREG SVV  G ++                     +D  F+A++VLAKHDE YMP+EVA  +++  K
Sbjct:    4 KTRRLWIVIACLACVGSAAALTLRAFSSNIVFFMAPSQV----KANPPSPDRTIRLGGMVMAGSLHRINENGTPVNAFEVTDGQAAVEVHYTGILPDLFREGQSVVALGTVQ---------------------KDGGFTASEVLAKHDETYMPKEVADELKRTGK 143          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_METPB (Cytochrome c-type biogenesis protein ccmE OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=ccmE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.848e-17
Identity = 58/157 (36.94%), Postives = 79/157 (50.32%), Query Frame = 1
Query:   46 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIE 516
            +SRRL   A   + +A  + ++L+     +VF+ +P+E     Q  P   +FRLGGLV +GSV        +EF VTD    + V+Y G LPDLFREG  +V EG +                          F A  VLAKHDE YMP+EVA A++
Sbjct:    4 KSRRLILIAACGAVLALALGLILSAMSGSIVFFRSPAEVAS--QGVPPGTRFRLGGLVKDGSVKR-GPDQNVEFSVTDTNATVPVQYRGLLPDLFREGQGIVAEGTL---------------------DAGGVFRADTVLAKHDENYMPREVADALK 136          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_BRUSU (Cytochrome c-type biogenesis protein ccmE OS=Brucella suis GN=ccmE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.848e-17
Identity = 56/160 (35.00%), Postives = 83/160 (51.88%), Query Frame = 1
Query:   40 QMQSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEK 519
            Q + +RL+      + +A  + ++L  F   + F+ TP++  E  Q   S  +FRLGGLV EGSV+   + SE+ F VTD +  + V + G  PDLFREG  VV EG                         D  F A +VLAKHDE Y+P+++A +++K
Sbjct:   24 QRKRKRLFLIGGALAVLAVAVGLMLTAFNQDIRFFRTPADLTE--QDMTSGARFRLGGLVEEGSVSR--TGSELRFTVTDTIKTVKVVFEGIPPDLFREGQGVVAEGRF---------------------GSDGLFRADNVLAKHDENYVPKDLADSLKK 158          
The following BLAST results are available for this feature:
BLAST of CX307949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 247
Match NameE-valueIdentityDescription
CCME_METNO9.022e-1839.24Cytochrome c-type biogenesis protein ccmE OS=Methy... [more]
CCME_POLNA1.178e-1738.41Cytochrome c-type biogenesis protein ccmE OS=Polar... [more]
CCME_BORBR1.178e-1737.34Cytochrome c-type biogenesis protein ccmE OS=Borde... [more]
CCME_METPP1.539e-1742.03Cytochrome c-type biogenesis protein ccmE OS=Methy... [more]
CCME_METEP1.539e-1738.22Cytochrome c-type biogenesis protein ccmE OS=Methy... [more]
CCME2_PSEAE1.539e-1735.40Cytochrome c-type biogenesis protein ccmE OS=Pseud... [more]
CCME_BORPA3.428e-1736.71Cytochrome c-type biogenesis protein ccmE OS=Borde... [more]
CCME_GLUOX4.477e-1733.94Cytochrome c-type biogenesis protein ccmE OS=Gluco... [more]
CCME_METPB5.848e-1736.94Cytochrome c-type biogenesis protein ccmE OS=Methy... [more]
CCME_BRUSU5.848e-1735.00Cytochrome c-type biogenesis protein ccmE OS=Bruce... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC20004A09SK OF2 Citrus clementina cDNA clone C20004A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307949 ID=CX307949; Name=CX307949; organism=Citrus clementina; type=EST; length=530bp
GCCCGCCCCAACCGGGTCGATATCGGAGCCCGAGCCCGACAGATGCAGAG
CCGCCGCCTCTGGACTTACGCACTAACCTTCAGCTGCATCGCCGGCTTCA
TAGTAATCGTCCTAAATAACTTTCAAGACCAATTAGTCTTCTACGTAACC
CCATCTGAAGCCCTCGAAAAATATCAATCAAACCCCTCGAAAAACAAATT
CAGACTCGGGGGTTTGGTGCTCGAAGGCAGCGTGGCCCACCCCGCCTCGT
CGTCCGAAATGGAGTTCGTTGTGACGGATTTAGTTACAGATATTTTAGTT
AGGTATCACGGTTCGTTGCCCGATTTATTTAGAGAGGGACATTCCGTTGT
TGTTGAGGGATTTATTAAGCCGATTACAGAAGAGATTAAGAATGTGAAAT
CGGAGAAGAGTGTTTCCGAGAATGCTAGAAGTAGAGATTGTTTCTTTTCA
GCCACCGACGTTTTGGCTAAGCATGATGAGAAGTATATGCCTCAAGAAGT
TGCGGCGGCGATTGAGAAGAACAAGAAGAT
back to top