CX307949

Overview
NameCX307949
Unique NameCX307949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length530
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME1_XANOM (Cytochrome c-type biogenesis protein ccmE 1 OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=ccmE1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.795e-11
Identity = 44/138 (31.88%), Postives = 65/138 (47.10%), Query Frame = 1
Query:  100 IVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAI 513
            + +++   Q  + +  TPS+   +  +     +FRLGG+V  GS+   A S ++ F V D      V Y G LPDLFR+  SV+                       N R +   F A +VLAKHDE YMP+E+  A+
Sbjct:   23 VTLIVFALQRNMSYLFTPSQV--RAGAAAGYQQFRLGGMVKAGSIQRAADSLKVSFTVIDKNAATPVEYTGILPDLFRDNQSVIA----------------------NGRMQGGRFVANEVLAKHDETYMPKELKDAM 136          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_RICTY (Cytochrome c-type biogenesis protein ccmE OS=Rickettsia typhi GN=ccmE PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.262e-11
Identity = 47/146 (32.19%), Postives = 70/146 (47.95%), Query Frame = 1
Query:   55 RLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMP 492
            RL    L F      I I+L N +  ++F+  PS+  E  Q      + R+GGLV   S+ +  S++++ FV+TD + D+ + Y G LP LFREG  ++  G                 +S+N       F A  +LAKHDE Y P
Sbjct:    8 RLIKIILCFCSTCLGISIILYNLEKNIIFFFPPSKINEAEQGK----ELRVGGLVKRDSI-NRISANKISFVITDNIKDLEILYQGVLPALFREGQGIIAIG----------------QLSDNK------FIARQLLAKHDENYRP 126          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_RICAE (Cytochrome c-type biogenesis protein ccmE OS=Rickettsia africae (strain ESF-5) GN=ccmE PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.262e-11
Identity = 49/155 (31.61%), Postives = 74/155 (47.74%), Query Frame = 1
Query:   43 MQSR---RLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQE 498
            MQ R   RL T  + F      I I+L N +  +VF++ PS+  E  Q      + R+GGLV   S+ +  +  ++ FV+TD + D  + Y G+LP LFR+G  ++  G       ++ N K               F A  +LAKHDE Y P +
Sbjct:    1 MQKRVRNRLITIIICFCSACLGISIILYNLEKNIVFFLPPSKINEIEQGK----ELRVGGLVKTDSI-NKIADDKISFVITDNIKDFEILYQGTLPTLFRKGQGIIAIG-------QLSNGK---------------FIARQLLAKHDENYRPPQ 128          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_RHISN (Cytochrome c-type biogenesis protein ccmE OS=Rhizobium sp. (strain NGR234) GN=ccmE PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.262e-11
Identity = 49/136 (36.03%), Postives = 65/136 (47.79%), Query Frame = 1
Query:  100 IVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEG-FIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVA 504
            +++V+  F   + ++  P + L K    P   + RLGGLV  GSV        + F VTD +  + V Y G LPDLFREG  VV EG F+                     +    F A  VLAKHDE YMP++VA
Sbjct:   22 VLLVMFAFSQAVAYFYVPGD-LAKADLAPG-TRIRLGGLVEAGSVKR-GDGKTVTFSVTDTLAVVPVTYTGILPDLFREGQGVVAEGAFV---------------------AGSSVFVADTVLAKHDETYMPKDVA 133          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_PSEA6 (Cytochrome c-type biogenesis protein ccmE OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=ccmE PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.262e-11
Identity = 48/159 (30.19%), Postives = 70/159 (44.03%), Query Frame = 1
Query:   46 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKN------KFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVA 504
            + +RL   +     I   I ++L      +  + TPSE ++  Q            + R+GG+V+ GSV     S  + F + D    + V Y G LPDLFREG  +V  G +                +EN         A +VLAKHDE+YMP E+A
Sbjct:    5 RQKRLIVISAIVLVIGAAIGLMLYALSQNIDLFYTPSEVIDGKQIGQVTEVPQVGQRLRIGGMVVPGSVKRDNESLAVSFDLIDTGPIVTVSYQGLLPDLFREGQGIVATGVL---------------TAEN------HIEAHEVLAKHDEEYMPPELA 142          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_RICPR (Cytochrome c-type biogenesis protein ccmE OS=Rickettsia prowazekii GN=ccmE PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.179e-11
Identity = 42/131 (32.06%), Postives = 64/131 (48.85%), Query Frame = 1
Query:  100 IVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMP 492
            I I+L N +  ++F+  PS+  E  Q      + R+GGLV   S+ +  S++++ FV+TD + D+ + Y G LP LFREG  ++  G +                       D  F A  +LAKHDE Y P
Sbjct:   23 ISIILYNLEKNIIFFFPPSKINEAEQGK----ELRVGGLVKRDSI-NKISANKISFVITDNIKDLEILYQGVLPALFREGQGIIAIGQLS----------------------DSKFIARQLLAKHDENYRP 126          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_ANAPZ (Cytochrome c-type biogenesis protein ccmE OS=Anaplasma phagocytophilum (strain HZ) GN=ccmE PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.179e-11
Identity = 44/157 (28.03%), Postives = 75/157 (47.77%), Query Frame = 1
Query:   40 QMQSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAA 510
            Q + +R+   A++F  +      VL      + F+ TP+E +       S+   R+GG++++GS+     S  + F +TDL T++ V Y G LP +F E    + +G                      R  D  F A ++LAKHDEKYMP++ +++
Sbjct:    2 QRKHKRILFVAVSFIALGCVSAFVLFELSKSISFFCTPTELVAD-PIKSSRYPIRVGGMIVKGSIVRHGDS--VTFSITDLGTELEVTYRGVLPPMFGEDVGAIAKG----------------------RFVDGVFIAEELLAKHDEKYMPKKYSSS 133          
The following BLAST results are available for this feature:
BLAST of CX307949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 247
Match NameE-valueIdentityDescription
CCME1_XANOM4.795e-1131.88Cytochrome c-type biogenesis protein ccmE 1 OS=Xan... [more]
CCME_RICTY6.262e-1132.19Cytochrome c-type biogenesis protein ccmE OS=Ricke... [more]
CCME_RICAE6.262e-1131.61Cytochrome c-type biogenesis protein ccmE OS=Ricke... [more]
CCME_RHISN6.262e-1136.03Cytochrome c-type biogenesis protein ccmE OS=Rhizo... [more]
CCME_PSEA66.262e-1130.19Cytochrome c-type biogenesis protein ccmE OS=Pseud... [more]
CCME_RICPR8.179e-1132.06Cytochrome c-type biogenesis protein ccmE OS=Ricke... [more]
CCME_ANAPZ8.179e-1128.03Cytochrome c-type biogenesis protein ccmE OS=Anapl... [more]

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Properties
Property NameValue
Genbank descriptionC20004A09SK OF2 Citrus clementina cDNA clone C20004A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307949 ID=CX307949; Name=CX307949; organism=Citrus clementina; type=EST; length=530bp
GCCCGCCCCAACCGGGTCGATATCGGAGCCCGAGCCCGACAGATGCAGAG
CCGCCGCCTCTGGACTTACGCACTAACCTTCAGCTGCATCGCCGGCTTCA
TAGTAATCGTCCTAAATAACTTTCAAGACCAATTAGTCTTCTACGTAACC
CCATCTGAAGCCCTCGAAAAATATCAATCAAACCCCTCGAAAAACAAATT
CAGACTCGGGGGTTTGGTGCTCGAAGGCAGCGTGGCCCACCCCGCCTCGT
CGTCCGAAATGGAGTTCGTTGTGACGGATTTAGTTACAGATATTTTAGTT
AGGTATCACGGTTCGTTGCCCGATTTATTTAGAGAGGGACATTCCGTTGT
TGTTGAGGGATTTATTAAGCCGATTACAGAAGAGATTAAGAATGTGAAAT
CGGAGAAGAGTGTTTCCGAGAATGCTAGAAGTAGAGATTGTTTCTTTTCA
GCCACCGACGTTTTGGCTAAGCATGATGAGAAGTATATGCCTCAAGAAGT
TGCGGCGGCGATTGAGAAGAACAAGAAGAT
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