CX307949

Overview
NameCX307949
Unique NameCX307949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length530
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_RHOPT (Cytochrome c-type biogenesis protein ccmE OS=Rhodopseudomonas palustris (strain TIE-1) GN=ccmE PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.950e-16
Identity = 53/139 (38.13%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  106 IVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKN 522
            +VLN  +D +VF+ TP    E++    +  +FRLGG+V  GS+        + F VTD    + V Y G LPDLFREG  V+ EG +                      +   F A  VLAKHDEKYMP+EVA A++K+
Sbjct:   24 LVLNALRDSIVFFSTPKMVAEQHIE--AGKRFRLGGVVEPGSLQR-GEQLRVSFKVTDGAASLPVAYKGILPDLFREGQGVIAEGSL---------------------DKAGVFEADTVLAKHDEKYMPKEVADALKKD 138          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_RHOPA (Cytochrome c-type biogenesis protein ccmE OS=Rhodopseudomonas palustris GN=ccmE PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.950e-16
Identity = 53/139 (38.13%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  106 IVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKN 522
            +VLN  +D +VF+ TP    E++    +  +FRLGG+V  GS+        + F VTD    + V Y G LPDLFREG  V+ EG +                      +   F A  VLAKHDEKYMP+EVA A++K+
Sbjct:   24 LVLNALRDSIVFFSTPKMVAEQHIE--AGKRFRLGGVVEPGSLQR-GEQLRVSFKVTDGAASLPVAYKGILPDLFREGQGVIAEGSL---------------------DKAGVFEADTVLAKHDEKYMPKEVADALKKD 138          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_METS4 (Cytochrome c-type biogenesis protein ccmE OS=Methylobacterium sp. (strain 4-46) GN=ccmE PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.950e-16
Identity = 60/159 (37.74%), Postives = 80/159 (50.31%), Query Frame = 1
Query:   46 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKN 522
            + RRL       + +A  + +VL      +VF+ +PSE     ++     +FRLGGLV  GSV      S++ F VTD    + VRY G LPDLFREG  VV EG ++P                        F A  VLAKHDE YMP+EVA A++K+
Sbjct:    4 KQRRLVFIGTCGAVLAVALGLVLWAMSGTIVFFRSPSEIAR--EAVAPGVRFRLGGLVEAGSVVR-GPDSQVTFAVTDNAARLPVRYRGLLPDLFREGQGVVAEGAMEP---------------------GGVFRADTVLAKHDETYMPREVADALKKS 138          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_POLNS (Cytochrome c-type biogenesis protein ccmE OS=Polynucleobacter necessarius (strain STIR1) GN=ccmE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16
Identity = 52/142 (36.62%), Postives = 73/142 (51.41%), Query Frame = 1
Query:  103 VIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKK 528
            +++LN     +  YVTPSE        P    FR+GG+V +GS+     +  + FV+TDL  DI V Y G LPDLF+EG   V++G +        N   E             F A++VLAKHDE YMP E   A+++ +K
Sbjct:   23 LLILNALNSNIALYVTPSEVAAG--KAPQGQAFRIGGMVKDGSLKRDGLT--VHFVITDLAKDIPVAYIGILPDLFKEGKGAVIQGRM--------NANGE-------------FIASEVLAKHDENYMPPEAKHALDQAQK 139          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_BRAJA (Cytochrome c-type biogenesis protein ccmE OS=Bradyrhizobium japonicum GN=ccmE PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16
Identity = 57/158 (36.08%), Postives = 79/158 (50.00%), Query Frame = 1
Query:   46 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEK 519
            + RR+     + + +A    +VLN  +D +VF+ TP+   EK+    +  +FRLGGLV  GS+     +  + F V D    + V Y G LPDLFREG  VV EG                     A   +  F A  VLAKHDE YMP++VA A++K
Sbjct:    4 KQRRMTIIGGSLAVLALAAALVLNALRDSIVFFSTPTMVAEKHVQ--AGKRFRLGGLVQPGSLQR-GDNLAVSFEVADGNAKLPVAYKGILPDLFREGQGVVAEG---------------------ALDANGVFKADTVLAKHDETYMPKDVADALKK 137          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_CAUSK (Cytochrome c-type biogenesis protein ccmE OS=Caulobacter sp. (strain K31) GN=ccmE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.444e-16
Identity = 58/157 (36.94%), Postives = 78/157 (49.68%), Query Frame = 1
Query:   52 RRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVA-HPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEK 519
            RRL   A+    +A  + + L   +D +  + TP++A   +   P+  K +LGGLV  GSV  HP     +EFVV D  +  LV Y G LPDLFREG  +V  G                     A      F A  VLAKHDE+YMP+EVA A+++
Sbjct:   12 RRLTILAVAAPVVALAVGLALWGMRDAISLFYTPAQAAAAHV--PAGRKVQLGGLVKAGSVVKHP--DGLVEFVVADQRSTALVHYKGDLPDLFREGQGIVASG---------------------AFDESGTFVANQVLAKHDERYMPREVAKALKE 143          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_BEII9 (Cytochrome c-type biogenesis protein ccmE OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=ccmE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.444e-16
Identity = 58/158 (36.71%), Postives = 81/158 (51.27%), Query Frame = 1
Query:   46 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEK 519
            + RRL+        +   + ++L    D +VF+  P+E  EK   +P   + R+GGLV  GS+   A  + + F+VTD   D+ V Y G LPDLFREG  VV EG +              +  E  R       A  VLAKHDE+YMP+EVA A++K
Sbjct:    4 KQRRLFMIFGALGTLGVAVGLILFALSDNIVFFYGPTELAEK-APHPGA-RLRIGGLVKPGSLEREAGQT-VHFIVTDNKHDVAVTYTGLLPDLFREGQGVVTEGTL--------------TGKETLR-------ADSVLAKHDERYMPREVADALKK 137          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_HAEIN (Cytochrome c-type biogenesis protein ccmE OS=Haemophilus influenzae GN=ccmE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.103e-15
Identity = 50/170 (29.41%), Postives = 83/170 (48.82%), Query Frame = 1
Query:   43 MQSRRLWTYALTFSCIAGFIV---IVLNNFQDQLVFYVTPSEALEKYQSNPSKN-----KFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKK 528
            M  RR   + L    + G  +   ++L   +  +  + TPSE ++   +NP++      + R+GG+V+EG+V     S ++ F + D+   I V Y G LPDLFREG  +V +G +                     ++    +AT+VLAKHDE Y+P E+   ++K  K
Sbjct:    1 MNPRRKSRFKLVIFVVLGIAIASGLMLYALRQNIDLFYTPSEVIQGKDNNPNQKPEVGQRIRVGGMVVEGTVVRDPKSLKVRFDLNDIGPAITVEYEGILPDLFREGQGIVAQGVL---------------------TQPTVLTATEVLAKHDENYVPPELGEKMQKVHK 149          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_AZOVD (Cytochrome c-type biogenesis protein ccmE OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ccmE PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.103e-15
Identity = 53/160 (33.12%), Postives = 75/160 (46.88%), Query Frame = 1
Query:   43 MQSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKN 522
            ++ RRL+      + +   + + L+  Q  +  + TPS+        P   + R GGLV +GS+   A+S    F VTD V  + VRY G LPDLFREG  +V  G +                            A +VLAKHDE YMP EV+ A+EK+
Sbjct:    4 VRKRRLFIVLAILAGVGAAVALALSALQQNINLFYTPSQIAAG--EAPEGARIRAGGLVEKGSLQRDATSLAATFRVTDGVATVTVRYQGILPDLFREGQGIVALGRV---------------------DAGGMLQADEVLAKHDENYMPPEVSQALEKS 140          
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_RHILW (Cytochrome c-type biogenesis protein ccmE OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=ccmE PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.881e-15
Identity = 59/159 (37.11%), Postives = 82/159 (51.57%), Query Frame = 1
Query:   46 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTD-LVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEK 519
            + +RL   A     IA  +++V+  F   + ++  P++ L K    P + + RLGGLV EGSV   A S+ +EF VTD     + V+Y G LPDLFREG  VV EG   P T                      F+A  VLAKHDE YMP++VA  +++
Sbjct:    4 KQKRLAVIAGGMGFIAAAVLLVMFAFSQSVAYFYMPAD-LAKTPVAP-ETRIRLGGLVGEGSVVRGAGST-VEFSVTDGSANAVKVKYTGILPDLFREGQGVVTEGMFAPGTN--------------------VFTADTVLAKHDETYMPKDVADRLKQ 139          
The following BLAST results are available for this feature:
BLAST of CX307949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 247
Match NameE-valueIdentityDescription
CCME_RHOPT4.950e-1638.13Cytochrome c-type biogenesis protein ccmE OS=Rhodo... [more]
CCME_RHOPA4.950e-1638.13Cytochrome c-type biogenesis protein ccmE OS=Rhodo... [more]
CCME_METS44.950e-1637.74Cytochrome c-type biogenesis protein ccmE OS=Methy... [more]
CCME_POLNS6.465e-1636.62Cytochrome c-type biogenesis protein ccmE OS=Polyn... [more]
CCME_BRAJA6.465e-1636.08Cytochrome c-type biogenesis protein ccmE OS=Brady... [more]
CCME_CAUSK8.444e-1636.94Cytochrome c-type biogenesis protein ccmE OS=Caulo... [more]
CCME_BEII98.444e-1636.71Cytochrome c-type biogenesis protein ccmE OS=Beije... [more]
CCME_HAEIN1.103e-1529.41Cytochrome c-type biogenesis protein ccmE OS=Haemo... [more]
CCME_AZOVD1.103e-1533.13Cytochrome c-type biogenesis protein ccmE OS=Azoto... [more]
CCME_RHILW1.881e-1537.11Cytochrome c-type biogenesis protein ccmE OS=Rhizo... [more]

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Properties
Property NameValue
Genbank descriptionC20004A09SK OF2 Citrus clementina cDNA clone C20004A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307949 ID=CX307949; Name=CX307949; organism=Citrus clementina; type=EST; length=530bp
GCCCGCCCCAACCGGGTCGATATCGGAGCCCGAGCCCGACAGATGCAGAG
CCGCCGCCTCTGGACTTACGCACTAACCTTCAGCTGCATCGCCGGCTTCA
TAGTAATCGTCCTAAATAACTTTCAAGACCAATTAGTCTTCTACGTAACC
CCATCTGAAGCCCTCGAAAAATATCAATCAAACCCCTCGAAAAACAAATT
CAGACTCGGGGGTTTGGTGCTCGAAGGCAGCGTGGCCCACCCCGCCTCGT
CGTCCGAAATGGAGTTCGTTGTGACGGATTTAGTTACAGATATTTTAGTT
AGGTATCACGGTTCGTTGCCCGATTTATTTAGAGAGGGACATTCCGTTGT
TGTTGAGGGATTTATTAAGCCGATTACAGAAGAGATTAAGAATGTGAAAT
CGGAGAAGAGTGTTTCCGAGAATGCTAGAAGTAGAGATTGTTTCTTTTCA
GCCACCGACGTTTTGGCTAAGCATGATGAGAAGTATATGCCTCAAGAAGT
TGCGGCGGCGATTGAGAAGAACAAGAAGAT
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