CX307949
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_RHOPT (Cytochrome c-type biogenesis protein ccmE OS=Rhodopseudomonas palustris (strain TIE-1) GN=ccmE PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.950e-16 Identity = 53/139 (38.13%), Postives = 72/139 (51.80%), Query Frame = 1 Query: 106 IVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKN 522 +VLN +D +VF+ TP E++ + +FRLGG+V GS+ + F VTD + V Y G LPDLFREG V+ EG + + F A VLAKHDEKYMP+EVA A++K+ Sbjct: 24 LVLNALRDSIVFFSTPKMVAEQHIE--AGKRFRLGGVVEPGSLQR-GEQLRVSFKVTDGAASLPVAYKGILPDLFREGQGVIAEGSL---------------------DKAGVFEADTVLAKHDEKYMPKEVADALKKD 138
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_RHOPA (Cytochrome c-type biogenesis protein ccmE OS=Rhodopseudomonas palustris GN=ccmE PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.950e-16 Identity = 53/139 (38.13%), Postives = 72/139 (51.80%), Query Frame = 1 Query: 106 IVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKN 522 +VLN +D +VF+ TP E++ + +FRLGG+V GS+ + F VTD + V Y G LPDLFREG V+ EG + + F A VLAKHDEKYMP+EVA A++K+ Sbjct: 24 LVLNALRDSIVFFSTPKMVAEQHIE--AGKRFRLGGVVEPGSLQR-GEQLRVSFKVTDGAASLPVAYKGILPDLFREGQGVIAEGSL---------------------DKAGVFEADTVLAKHDEKYMPKEVADALKKD 138
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_METS4 (Cytochrome c-type biogenesis protein ccmE OS=Methylobacterium sp. (strain 4-46) GN=ccmE PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 4.950e-16 Identity = 60/159 (37.74%), Postives = 80/159 (50.31%), Query Frame = 1 Query: 46 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKN 522 + RRL + +A + +VL +VF+ +PSE ++ +FRLGGLV GSV S++ F VTD + VRY G LPDLFREG VV EG ++P F A VLAKHDE YMP+EVA A++K+ Sbjct: 4 KQRRLVFIGTCGAVLAVALGLVLWAMSGTIVFFRSPSEIAR--EAVAPGVRFRLGGLVEAGSVVR-GPDSQVTFAVTDNAARLPVRYRGLLPDLFREGQGVVAEGAMEP---------------------GGVFRADTVLAKHDETYMPREVADALKKS 138
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_POLNS (Cytochrome c-type biogenesis protein ccmE OS=Polynucleobacter necessarius (strain STIR1) GN=ccmE PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16 Identity = 52/142 (36.62%), Postives = 73/142 (51.41%), Query Frame = 1 Query: 103 VIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKK 528 +++LN + YVTPSE P FR+GG+V +GS+ + + FV+TDL DI V Y G LPDLF+EG V++G + N E F A++VLAKHDE YMP E A+++ +K Sbjct: 23 LLILNALNSNIALYVTPSEVAAG--KAPQGQAFRIGGMVKDGSLKRDGLT--VHFVITDLAKDIPVAYIGILPDLFKEGKGAVIQGRM--------NANGE-------------FIASEVLAKHDENYMPPEAKHALDQAQK 139
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_BRAJA (Cytochrome c-type biogenesis protein ccmE OS=Bradyrhizobium japonicum GN=ccmE PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 6.465e-16 Identity = 57/158 (36.08%), Postives = 79/158 (50.00%), Query Frame = 1 Query: 46 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEK 519 + RR+ + + +A +VLN +D +VF+ TP+ EK+ + +FRLGGLV GS+ + + F V D + V Y G LPDLFREG VV EG A + F A VLAKHDE YMP++VA A++K Sbjct: 4 KQRRMTIIGGSLAVLALAAALVLNALRDSIVFFSTPTMVAEKHVQ--AGKRFRLGGLVQPGSLQR-GDNLAVSFEVADGNAKLPVAYKGILPDLFREGQGVVAEG---------------------ALDANGVFKADTVLAKHDETYMPKDVADALKK 137
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_CAUSK (Cytochrome c-type biogenesis protein ccmE OS=Caulobacter sp. (strain K31) GN=ccmE PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 8.444e-16 Identity = 58/157 (36.94%), Postives = 78/157 (49.68%), Query Frame = 1 Query: 52 RRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVA-HPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEK 519 RRL A+ +A + + L +D + + TP++A + P+ K +LGGLV GSV HP +EFVV D + LV Y G LPDLFREG +V G A F A VLAKHDE+YMP+EVA A+++ Sbjct: 12 RRLTILAVAAPVVALAVGLALWGMRDAISLFYTPAQAAAAHV--PAGRKVQLGGLVKAGSVVKHP--DGLVEFVVADQRSTALVHYKGDLPDLFREGQGIVASG---------------------AFDESGTFVANQVLAKHDERYMPREVAKALKE 143
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_BEII9 (Cytochrome c-type biogenesis protein ccmE OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=ccmE PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 8.444e-16 Identity = 58/158 (36.71%), Postives = 81/158 (51.27%), Query Frame = 1 Query: 46 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEK 519 + RRL+ + + ++L D +VF+ P+E EK +P + R+GGLV GS+ A + + F+VTD D+ V Y G LPDLFREG VV EG + + E R A VLAKHDE+YMP+EVA A++K Sbjct: 4 KQRRLFMIFGALGTLGVAVGLILFALSDNIVFFYGPTELAEK-APHPGA-RLRIGGLVKPGSLEREAGQT-VHFIVTDNKHDVAVTYTGLLPDLFREGQGVVTEGTL--------------TGKETLR-------ADSVLAKHDERYMPREVADALKK 137
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_HAEIN (Cytochrome c-type biogenesis protein ccmE OS=Haemophilus influenzae GN=ccmE PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.103e-15 Identity = 50/170 (29.41%), Postives = 83/170 (48.82%), Query Frame = 1 Query: 43 MQSRRLWTYALTFSCIAGFIV---IVLNNFQDQLVFYVTPSEALEKYQSNPSKN-----KFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKK 528 M RR + L + G + ++L + + + TPSE ++ +NP++ + R+GG+V+EG+V S ++ F + D+ I V Y G LPDLFREG +V +G + ++ +AT+VLAKHDE Y+P E+ ++K K Sbjct: 1 MNPRRKSRFKLVIFVVLGIAIASGLMLYALRQNIDLFYTPSEVIQGKDNNPNQKPEVGQRIRVGGMVVEGTVVRDPKSLKVRFDLNDIGPAITVEYEGILPDLFREGQGIVAQGVL---------------------TQPTVLTATEVLAKHDENYVPPELGEKMQKVHK 149
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_AZOVD (Cytochrome c-type biogenesis protein ccmE OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=ccmE PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.103e-15 Identity = 53/160 (33.12%), Postives = 75/160 (46.88%), Query Frame = 1 Query: 43 MQSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKN 522 ++ RRL+ + + + + L+ Q + + TPS+ P + R GGLV +GS+ A+S F VTD V + VRY G LPDLFREG +V G + A +VLAKHDE YMP EV+ A+EK+ Sbjct: 4 VRKRRLFIVLAILAGVGAAVALALSALQQNINLFYTPSQIAAG--EAPEGARIRAGGLVEKGSLQRDATSLAATFRVTDGVATVTVRYQGILPDLFREGQGIVALGRV---------------------DAGGMLQADEVLAKHDENYMPPEVSQALEKS 140
BLAST of CX307949 vs. ExPASy Swiss-Prot
Match: CCME_RHILW (Cytochrome c-type biogenesis protein ccmE OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=ccmE PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.881e-15 Identity = 59/159 (37.11%), Postives = 82/159 (51.57%), Query Frame = 1 Query: 46 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTD-LVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEK 519 + +RL A IA +++V+ F + ++ P++ L K P + + RLGGLV EGSV A S+ +EF VTD + V+Y G LPDLFREG VV EG P T F+A VLAKHDE YMP++VA +++ Sbjct: 4 KQKRLAVIAGGMGFIAAAVLLVMFAFSQSVAYFYMPAD-LAKTPVAP-ETRIRLGGLVGEGSVVRGAGST-VEFSVTDGSANAVKVKYTGILPDLFREGQGVVTEGMFAPGTN--------------------VFTADTVLAKHDETYMPKDVADRLKQ 139 The following BLAST results are available for this feature:
BLAST of CX307949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 247
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Sequences
The
following sequences are available for this feature:
EST sequence >CX307949 ID=CX307949; Name=CX307949; organism=Citrus clementina; type=EST; length=530bpback to top |