CX307950

Overview
NameCX307950
Unique NameCX307950
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length534
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX307950 vs. ExPASy Swiss-Prot
Match: CCME_SHIB3 (Cytochrome c-type biogenesis protein ccmE OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ccmE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.238e-14
Identity = 53/165 (32.12%), Postives = 76/165 (46.06%), Query Frame = 2 
Query:   47 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEAL----EKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKK 529
            +  RLW      + +A  I +VL   +  +  + TP E L    E  Q      + R+GG+V+ GSV    +S ++ F + D    + V Y G LPDLFREG  VVV+G ++                     +     A +VLAKHDE Y P EV  A+E N +
Sbjct:    5 RKNRLWIACAVLAGLALTIGLVLYALRSNIDLFYTPGEILYGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDLFREGQGVVVQGELE---------------------KGNHILAKEVLAKHDENYTPPEVEKAMEANHR 148
[Close]
BLAST of CX307950 vs. ExPASy Swiss-Prot
Match: CCME_RUTMC (Cytochrome c-type biogenesis protein ccmE OS=Ruthia magnifica subsp. Calyptogena magnifica GN=ccmE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.238e-14
Identity = 51/138 (36.96%), Postives = 69/138 (50.00%), Query Frame = 2 
Query:  113 LNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNK 526
            L  F + L+++ +P++  E     P    FRLGG+V + SV       ++ F VTD V    V Y G LPDLF+EG  ++  G +      I  +                F AT+VLAKHDE YMP EVA A+EK K
Sbjct:   26 LKAFNENLLYFFSPTDVTEG--KAPKGKSFRLGGMVAKNSVKR--DGVKVTFDVTDYVNTFRVNYSGILPDLFKEGQGIITTGSL------INGI----------------FIATEVLAKHDESYMPPEVADALEKAK 137
[Close]
BLAST of CX307950 vs. ExPASy Swiss-Prot
Match: CCME_MANSM (Cytochrome c-type biogenesis protein ccmE OS=Mannheimia succiniciproducens (strain MBEL55E) GN=ccmE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.238e-14
Identity = 48/146 (32.88%), Postives = 75/146 (51.37%), Query Frame = 2 
Query:  107 IVLNNFQDQLVFYVTPSEALEKYQSNPSK-----NKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKK 529
            +VL   +  +  + TPSE +     +P        + R+GG+V+EG+V    +S ++ F V D+  +I V Y G LPDLFREG  +V +G +K           E  + E          AT+VLAKHDE Y+P +++  +E+  K
Sbjct:   25 LVLYALRQNIDLFYTPSEVISGKNDDPDTIPEVGQRIRVGGMVVEGTVKRDPNSLKVSFNVNDIGPEITVEYEGILPDLFREGQGIVAQGVLK-----------EPKLLE----------ATEVLAKHDENYVPPDLSEKMEQVHK 149
[Close]
BLAST of CX307950 vs. ExPASy Swiss-Prot
Match: CCME_LEGPL (Cytochrome c-type biogenesis protein ccmE OS=Legionella pneumophila (strain Lens) GN=ccmE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.238e-14
Identity = 49/162 (30.25%), Postives = 77/162 (47.53%), Query Frame = 2 
Query:   44 MQSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEALEKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKK 529
            ++ R+L+      S ++    +VL   +  +  + TP++ +      P+K+  R+GG+V   S+        ++F +TD    I+V Y G LPDLFREG  +V EG                 V++N       F AT VLAKHD  YMP +V +A+    K
Sbjct:    4 VRRRKLFILLFALSVLSAAAALVLYALRQNISLFYTPTQIVAG--EAPAKHHIRVGGMVEANSIVRAKKGLAVQFKITDFENTIVVTYSGILPDLFREGQGIVAEG----------------EVTDNHH-----FHATQVLAKHDANYMPPQVKSALADKVK 142
[Close]
BLAST of CX307950 vs. ExPASy Swiss-Prot
Match: CCME_ESCF3 (Cytochrome c-type biogenesis protein ccmE OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=ccmE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.238e-14
Identity = 53/165 (32.12%), Postives = 76/165 (46.06%), Query Frame = 2 
Query:   47 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEAL----EKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKK 529
            +  RLW      + +A  I +VL   +  +  + TP E L    E  Q      + R+GG+V+ GSV    +S ++ F + D    + V Y G LPDLFREG  VVV+G ++                     +     A +VLAKHDE Y P EV  A+E N +
Sbjct:    5 RKNRLWIACAVLAGLALTIGLVLYALRSNIDLFYTPGEILYGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDLFREGQGVVVQGELE---------------------KGNHILAKEVLAKHDENYTPPEVEKAMEANHR 148
[Close]
BLAST of CX307950 vs. ExPASy Swiss-Prot
Match: CCME_ECOUT (Cytochrome c-type biogenesis protein ccmE OS=Escherichia coli (strain UTI89 / UPEC) GN=ccmE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.238e-14
Identity = 53/165 (32.12%), Postives = 76/165 (46.06%), Query Frame = 2 
Query:   47 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEAL----EKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKK 529
            +  RLW      + +A  I +VL   +  +  + TP E L    E  Q      + R+GG+V+ GSV    +S ++ F + D    + V Y G LPDLFREG  VVV+G ++                     +     A +VLAKHDE Y P EV  A+E N +
Sbjct:    5 RKNRLWIACAVLAGLALTIGLVLYALRSNIDLFYTPGEILYGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDLFREGQGVVVQGELE---------------------KGNHILAKEVLAKHDENYTPPEVEKAMEANHR 148
[Close]
BLAST of CX307950 vs. ExPASy Swiss-Prot
Match: CCME_ECOSE (Cytochrome c-type biogenesis protein ccmE OS=Escherichia coli (strain SE11) GN=ccmE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.238e-14
Identity = 53/165 (32.12%), Postives = 76/165 (46.06%), Query Frame = 2 
Query:   47 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEAL----EKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKK 529
            +  RLW      + +A  I +VL   +  +  + TP E L    E  Q      + R+GG+V+ GSV    +S ++ F + D    + V Y G LPDLFREG  VVV+G ++                     +     A +VLAKHDE Y P EV  A+E N +
Sbjct:    5 RKNRLWIACAVLAGLALTIGLVLYALRSNIDLFYTPGEILYGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDLFREGQGVVVQGELE---------------------KGNHILAKEVLAKHDENYTPPEVEKAMEANHR 148
[Close]
BLAST of CX307950 vs. ExPASy Swiss-Prot
Match: CCME_ECOLU (Cytochrome c-type biogenesis protein ccmE OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ccmE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.238e-14
Identity = 53/165 (32.12%), Postives = 76/165 (46.06%), Query Frame = 2 
Query:   47 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEAL----EKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKK 529
            +  RLW      + +A  I +VL   +  +  + TP E L    E  Q      + R+GG+V+ GSV    +S ++ F + D    + V Y G LPDLFREG  VVV+G ++                     +     A +VLAKHDE Y P EV  A+E N +
Sbjct:    5 RKNRLWIACAVLAGLALTIGLVLYALRSNIDLFYTPGEILYGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDLFREGQGVVVQGELE---------------------KGNHILAKEVLAKHDENYTPPEVEKAMEANHR 148
[Close]
BLAST of CX307950 vs. ExPASy Swiss-Prot
Match: CCME_ECOLI (Cytochrome c-type biogenesis protein ccmE OS=Escherichia coli (strain K12) GN=ccmE PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.238e-14
Identity = 53/165 (32.12%), Postives = 76/165 (46.06%), Query Frame = 2 
Query:   47 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEAL----EKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKK 529
            +  RLW      + +A  I +VL   +  +  + TP E L    E  Q      + R+GG+V+ GSV    +S ++ F + D    + V Y G LPDLFREG  VVV+G ++                     +     A +VLAKHDE Y P EV  A+E N +
Sbjct:    5 RKNRLWIACAVLAGLALTIGLVLYALRSNIDLFYTPGEILYGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDLFREGQGVVVQGELE---------------------KGNHILAKEVLAKHDENYTPPEVEKAMEANHR 148
[Close]
BLAST of CX307950 vs. ExPASy Swiss-Prot
Match: CCME_ECOLC (Cytochrome c-type biogenesis protein ccmE OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=ccmE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.238e-14
Identity = 53/165 (32.12%), Postives = 76/165 (46.06%), Query Frame = 2 
Query:   47 QSRRLWTYALTFSCIAGFIVIVLNNFQDQLVFYVTPSEAL----EKYQSNPSKNKFRLGGLVLEGSVAHPASSSEMEFVVTDLVTDILVRYHGSLPDLFREGHSVVVEGFIKPITEEIKNVKSEKSVSENARSRDCFFSATDVLAKHDEKYMPQEVAAAIEKNKK 529
            +  RLW      + +A  I +VL   +  +  + TP E L    E  Q      + R+GG+V+ GSV    +S ++ F + D    + V Y G LPDLFREG  VVV+G ++                     +     A +VLAKHDE Y P EV  A+E N +
Sbjct:    5 RKNRLWIACAVLAGLALTIGLVLYALRSNIDLFYTPGEILYGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDLFREGQGVVVQGELE---------------------KGNHILAKEVLAKHDENYTPPEVEKAMEANHR 148
The following BLAST results are available for this feature:
BLAST of CX307950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 247
Match NameE-valueIdentityDescription
CCME_SHIB31.238e-1432.12Cytochrome c-type biogenesis protein ccmE OS=Shige... [more]
CCME_RUTMC1.238e-1436.96Cytochrome c-type biogenesis protein ccmE OS=Ruthi... [more]
CCME_MANSM1.238e-1432.88Cytochrome c-type biogenesis protein ccmE OS=Mannh... [more]
CCME_LEGPL1.238e-1430.25Cytochrome c-type biogenesis protein ccmE OS=Legio... [more]
CCME_ESCF31.238e-1432.12Cytochrome c-type biogenesis protein ccmE OS=Esche... [more]
CCME_ECOUT1.238e-1432.12Cytochrome c-type biogenesis protein ccmE OS=Esche... [more]
CCME_ECOSE1.238e-1432.12Cytochrome c-type biogenesis protein ccmE OS=Esche... [more]
CCME_ECOLU1.238e-1432.12Cytochrome c-type biogenesis protein ccmE OS=Esche... [more]
CCME_ECOLI1.238e-1432.12Cytochrome c-type biogenesis protein ccmE OS=Esche... [more]
CCME_ECOLC1.238e-1432.12Cytochrome c-type biogenesis protein ccmE OS=Esche... [more]

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Properties
Property NameValue
Genbank descriptionC20004A10SK OF2 Citrus clementina cDNA clone C20004A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX307950 ID=CX307950; Name=CX307950; organism=Citrus clementina; type=EST; length=534bp
GGCCCGCCCCAACCGGGTCGATATCGGAGCCCGAGCCCGACAGATGCAGA
GCCGCCGCCTCTGGACTTACGCACTAACCTTCAGCTGCATCGCCGGCTTC
ATAGTAATCGTCCTAAATAACTTTCAAGACCAATTAGTCTTCTACGTAAC
CCCATCTGAAGCCCTCGAAAAATATCAATCAAACCCCTCGAAAAACAAAT
TCAGACTCGGGGGTTTGGTGCTCGAAGGCAGCGTGGCCCACCCCGCCTCG
TCGTCCGAAATGGAGTTCGTTGTGACGGATTTAGTTACAGATATTTTAGT
TAGGTATCACGGTTCGTTGCCCGATTTATTTAGAGAGGGACATTCCGTTG
TTGTTGAGGGATTTATTAAGCCGATTACAGAAGAGATTAAGAATGTGAAA
TCGGAGAAGAGTGTTTCGGAGAATGCTAGAAGTAGAGATTGTTTCTTTTC
AGCCACCGACGTTTTGGCTAAGCATGATGAGAAGTATATGCCTCAAGAAG
TTGCGGCGGCGATTGAGAAGAACAAGAAGATGTT
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