CX308010

Overview
NameCX308010
Unique NameCX308010
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: RL40_CHICK (60S ribosomal protein L40 OS=Gallus gallus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.678e-16
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 3
Query:  465 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSN 593
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTN 43          
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: RL40_CANFA (60S ribosomal protein L40 OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.678e-16
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 3
Query:  465 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSN 593
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTN 43          
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: RL40_BOVIN (60S ribosomal protein L40 OS=Bos taurus GN=UBA52 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.678e-16
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 3
Query:  465 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSN 593
            IIEPSL  LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N
Sbjct:    1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTN 43          
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: RL40_DICDI (60S ribosomal protein L40 OS=Dictyostelium discoideum GN=ubqB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.191e-16
Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 3
Query:  468 IEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSN 593
            IEPSL+ LARKY  DKMICRKCYARLHPRAVNCRKKKCGHSN
Sbjct:    1 IEPSLVILARKYKCDKMICRKCYARLHPRAVNCRKKKCGHSN 42          
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.881e-16
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 3
Query:   42 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGYSVLFI 245
            I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+ G SVL +
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGG-SVLHL 69          
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: RL40_DROME (60S ribosomal protein L40 OS=Drosophila melanogaster GN=RpL40 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.881e-16
Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 3
Query:  465 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSN 593
            IIEPSL  LA+KYN DKMICRKCYARLHPRA NCRKKKCGH+N
Sbjct:    1 IIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTN 43          
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.375e-16
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 3
Query:   42 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGYSVLFI 245
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+ G SVL +
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGG-SVLHL 69          
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.375e-16
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 3
Query:   42 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGYSVLFI 245
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+ G SVL +
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGG-SVLHL 69          
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.375e-16
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 3
Query:   42 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGYSVLFI 245
            I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+ G SVL +
Sbjct:    3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGG-SVLHL 69          
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.326e-16
Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = 3
Query:   36 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGYSVLFI 245
            M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q G SVL +
Sbjct:    1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGG-SVLHL 69          
The following BLAST results are available for this feature:
BLAST of CX308010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
RL40_CHICK1.678e-1688.3760S ribosomal protein L40 OS=Gallus gallus GN=UBA5... [more]
RL40_CANFA1.678e-1688.3760S ribosomal protein L40 OS=Canis familiaris GN=U... [more]
RL40_BOVIN1.678e-1688.3760S ribosomal protein L40 OS=Bos taurus GN=UBA52 P... [more]
RL40_DICDI2.191e-1690.4860S ribosomal protein L40 OS=Dictyostelium discoid... [more]
RUB1_DESAN4.881e-1661.76NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RL40_DROME4.881e-1686.0560S ribosomal protein L40 OS=Drosophila melanogast... [more]
RUB2_ORYSJ6.375e-1660.29NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ6.375e-1660.29NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH6.375e-1660.29NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
NEDD8_DROME8.326e-1655.71NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC20005A05SK OF2 Citrus clementina cDNA clone C20005A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308010 ID=CX308010; Name=CX308010; organism=Citrus clementina; type=EST; length=596bp
AGAGAGCGAGAGGAAAAGGAGAAAAGGGGAAAAAAATGCAGATCTTCGTG
AAAACCCTAACGGGGAAGACCATTACCCTCGAGGTCGAATCCAGCGACAC
CATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATTCCGCCGG
ACCAGCAGAGACTTATCTTCGCTGGGAAGCAACTTGAGGATGGCCGTACT
CTAGCCGATTACAATATCCAAAAGGGTTATTCTGTTTTATTTATTAATAA
AATTTTTGCGCCATTTTTACCAATAACTTAACGTTAGTTAGTTTAGTGAA
TTGTAAGAGTGAAACTTAGATTGGCCTTTTAACATAAATTTTTTCCAGCA
TATTATTATTCTTTTGTAAATTATGTTTGGGGTTTTAATTAGTGGATTTA
TTTGAATGCATATAAAAAATTTTCAGAGTCAACTCTGCATCTGGTTCTGA
GGCTTCGTGGTGGTATTATTGAGCCTTCTTTGATGGCATTGGCAAGGAAG
TATAACCAGGACAAGATGATCTGCCGAAAATGTTATGCACGCCTGCACCC
CCGTGCTGTGAACTGCAGGAAGAAGAAATGTGGGCACAGCAACCAG
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