CX308010
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: RL40_CHICK (60S ribosomal protein L40 OS=Gallus gallus GN=UBA52 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.678e-16 Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 3 Query: 465 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSN 593 IIEPSL LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N Sbjct: 1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTN 43
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: RL40_CANFA (60S ribosomal protein L40 OS=Canis familiaris GN=UBA52 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.678e-16 Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 3 Query: 465 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSN 593 IIEPSL LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N Sbjct: 1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTN 43
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: RL40_BOVIN (60S ribosomal protein L40 OS=Bos taurus GN=UBA52 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.678e-16 Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 3 Query: 465 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSN 593 IIEPSL LA+KYN DKMICRKCYARLHPRAVNCRKKKCGH+N Sbjct: 1 IIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTN 43
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: RL40_DICDI (60S ribosomal protein L40 OS=Dictyostelium discoideum GN=ubqB PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 2.191e-16 Identity = 38/42 (90.48%), Postives = 39/42 (92.86%), Query Frame = 3 Query: 468 IEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSN 593 IEPSL+ LARKY DKMICRKCYARLHPRAVNCRKKKCGHSN Sbjct: 1 IEPSLVILARKYKCDKMICRKCYARLHPRAVNCRKKKCGHSN 42
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 4.881e-16 Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 3 Query: 42 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGYSVLFI 245 I VKTLTGK I +++E +DTID VK ++++KEGIPP QQRLI+AGKQL D +T DYNI+ G SVL + Sbjct: 3 IKVKTLTGKEIEIDIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGG-SVLHL 69
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: RL40_DROME (60S ribosomal protein L40 OS=Drosophila melanogaster GN=RpL40 PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 4.881e-16 Identity = 37/43 (86.05%), Postives = 39/43 (90.70%), Query Frame = 3 Query: 465 IIEPSLMALARKYNQDKMICRKCYARLHPRAVNCRKKKCGHSN 593 IIEPSL LA+KYN DKMICRKCYARLHPRA NCRKKKCGH+N Sbjct: 1 IIEPSLRILAQKYNCDKMICRKCYARLHPRATNCRKKKCGHTN 43
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 6.375e-16 Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 3 Query: 42 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGYSVLFI 245 I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T DYNI+ G SVL + Sbjct: 3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGG-SVLHL 69
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 6.375e-16 Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 3 Query: 42 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGYSVLFI 245 I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T DYNI+ G SVL + Sbjct: 3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGG-SVLHL 69
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 6.375e-16 Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 3 Query: 42 IFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGYSVLFI 245 I VKTLTGK I +++E +DTID +K ++++KEGIPP QQRLI+AGKQL D +T DYNI+ G SVL + Sbjct: 3 IKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGG-SVLHL 69
BLAST of CX308010 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 8.326e-16 Identity = 39/70 (55.71%), Postives = 54/70 (77.14%), Query Frame = 3 Query: 36 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKGYSVLFI 245 M I VKTLTGK I +++E +D +D +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q G SVL + Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGG-SVLHL 69 The following BLAST results are available for this feature:
BLAST of CX308010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 122
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX308010 ID=CX308010; Name=CX308010; organism=Citrus clementina; type=EST; length=596bpback to top |