CX308012

Overview
NameCX308012
Unique NameCX308012
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length595
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308012 vs. ExPASy Swiss-Prot
Match: COPZ2_MOUSE (Coatomer subunit zeta-2 OS=Mus musculus GN=Copz2 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.788e-26
Identity = 69/172 (40.12%), Postives = 102/172 (59.30%), Query Frame = 1
Query:   76 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 591
            +IK + +LD++G+R+  KYY + +P+   +  FEK VF KT    +RTE+EIA L G  IVYK   D+  +V G   ENEL+L +VL   FD++  +LR NV+K+                VDGG+ILE+D   +  KV   + D G  L+EQ+++Q L +A+E +  SLLK
Sbjct:   40 TIKAVFILDNDGRRLLAKYYDDTFPSVKEQMVFEKNVFNKT----SRTESEIAFLGGMTIVYKSSIDIFLYVVGSSSENELMLMSVLACLFDSLSHILRKNVEKRWLLENMDGAFLVLDETVDGGVILESDPQQVIQKVNFRTDDSG--LTEQSVAQVLQSAKEQIKWSLLK 205          
BLAST of CX308012 vs. ExPASy Swiss-Prot
Match: COPZ2_HUMAN (Coatomer subunit zeta-2 OS=Homo sapiens GN=COPZ2 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.582e-25
Identity = 68/172 (39.53%), Postives = 101/172 (58.72%), Query Frame = 1
Query:   76 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 591
            +IK + +LD++G+R+  KYY + +P+   +  FEK VF KT    +RTE+EIA   G  IVYK   DL  +V G   ENEL+L +VL   F+++  +LR NV+K+                VDGG+ILE+D   +  KV   + D G  L+EQ+++Q L +A+E +  SLLK
Sbjct:   45 TIKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKT----SRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGG--LTEQSVAQVLQSAKEQIKWSLLK 210          
BLAST of CX308012 vs. ExPASy Swiss-Prot
Match: COPZ_CAEEL (Probable coatomer subunit zeta OS=Caenorhabditis elegans GN=F59E10.3 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.953e-22
Identity = 67/177 (37.85%), Postives = 97/177 (54.80%), Query Frame = 1
Query:   76 SIKNILLLDSEGKRVAVKYYSND-WPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQA----LATAREHLTRSLLK 591
            SIK I++LD +G RV  KYY    + T   ++AFEK++F+KT +    T A+I +L+G   +Y+   DL+F+V G   ENEL L   L   +DAV ++LR NV+KK                 D GII+ETDA  +  + A  S +V    S+Q++SQ     + +A E    SLLK
Sbjct:   13 SIKGIVILDQDGNRVLAKYYDRTTFGTVKEQKAFEKSLFSKTSRN---TSADILLLDGVTCLYRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLRKNVEKKALIDSMDTIMLIIDEICDEGIIMETDAQAVVQRTALKSDEVS--FSDQSVSQIGFSFMKSANEQFKWSLLK 184          
BLAST of CX308012 vs. ExPASy Swiss-Prot
Match: COPZA_DICDI (Probable coatomer subunit zeta-A OS=Dictyostelium discoideum GN=copza PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.215e-18
Identity = 55/168 (32.74%), Postives = 94/168 (55.95%), Query Frame = 1
Query:   76 SIKNILLLDS-EGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAV-GLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHL 573
            ++ +  +LDS +G+RV  KYY+ND+ T   ++AFEK VF KT K N     EI +L+  ++VYK   ++  ++ G +++NE+ L  VL  F D +  L     ++KK                +DGGII+E+D+ VIA +V   + D      +++I++A+ + +E L
Sbjct:    7 TVTSFFILDSSKGERVIAKYYNNDFDTLQKQKAFEKKVFDKTSKVN--FGGEITLLDNYLVVYKSFSNIIIYMVGDQNQNEIALLYVLNSFIDTLQNLFENSQINKKLILDGINYTLLTLDEIIDGGIIMESDSAVIADRVGIKAPDNDD--LDESINKAVTSVKEQL 170          
BLAST of CX308012 vs. ExPASy Swiss-Prot
Match: COPZ_SCHPO (Probable coatomer subunit zeta OS=Schizosaccharomyces pombe GN=ret3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.881e-16
Identity = 59/188 (31.38%), Postives = 91/188 (48.40%), Query Frame = 1
Query:   67 TCPSIKNILLLDSEGKRVAVKYYS-------NDWPTNSAKE--AFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKV----ASHSVDVGAPLSEQTISQALATAREHLTRSLLK 591
            T  ++   L+LDS GKR+  KYY+            NS KE   FEK +F KT KT    + +I   +G ++V   V D+ F++ GG +ENE++L   L+   DA+ LL +   DK+                +D G+ILET+  +IA +V     S +  + +   E     +   ARE +T  +LK
Sbjct:    4 TLYAVNAFLILDSSGKRIFTKYYAPPHLKEGEGGVFNSVKEEKTFEKGLFEKTWKT----QNDILTYDGKLVVMLTVMDVIFYIVGGMEENEVMLYECLRSIRDALELLFKYVPDKRTLLENYDQLVIVVDETIDDGVILETEPALIAARVTKGPVSEAQAIVSDFKEMGFMNSFQKAREKITERILK 187          
BLAST of CX308012 vs. ExPASy Swiss-Prot
Match: COPZ_YEAST (Coatomer subunit zeta OS=Saccharomyces cerevisiae GN=RET3 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.868e-13
Identity = 44/150 (29.33%), Postives = 77/150 (51.33%), Query Frame = 1
Query:   76 SIKNILLLDSEGKRVAVKYYSNDWPT--------NSAKEA--FEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVA 495
            +++ +L+LD +G+R+  KYY     +        NS K+   FEK ++ KT K     ++EI + E ++++YK   D+  ++    +ENE++L         A+ L+L   +DKK                +D G+ILETD+N IA +V+
Sbjct:    8 TVQAVLILDQQGERIYAKYYQPPHRSDEGHQLLFNSVKKQKEFEKQLYRKTHKQ----DSEILIFEDHLVLYKEYIDITIYLVASLEENEIVLQQGFSAIRGALDLILNSGMDKKNIQENYDMVLLAIDETIDNGVILETDSNTIASRVS 153          
The following BLAST results are available for this feature:
BLAST of CX308012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
COPZ2_MOUSE1.788e-2640.12Coatomer subunit zeta-2 OS=Mus musculus GN=Copz2 P... [more]
COPZ2_HUMAN2.582e-2539.53Coatomer subunit zeta-2 OS=Homo sapiens GN=COPZ2 P... [more]
COPZ_CAEEL5.953e-2237.85Probable coatomer subunit zeta OS=Caenorhabditis e... [more]
COPZA_DICDI5.215e-1832.74Probable coatomer subunit zeta-A OS=Dictyostelium ... [more]
COPZ_SCHPO4.881e-1631.38Probable coatomer subunit zeta OS=Schizosaccharomy... [more]
COPZ_YEAST3.868e-1329.33Coatomer subunit zeta OS=Saccharomyces cerevisiae ... [more]

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Properties
Property NameValue
Genbank descriptionC20005A07SK OF2 Citrus clementina cDNA clone C20005A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308012 ID=CX308012; Name=CX308012; organism=Citrus clementina; type=EST; length=595bp
GGAGTCTCAACGCTCGAAATTAATTGACTGCAGACGACCAAGTTTAATCG
AACAACAAGCATGGATACTTGTCCGTCCATAAAGAATATCCTTCTCCTGG
ATTCTGAAGGGAAACGTGTAGCAGTCAAGTATTATTCAAATGACTGGCCA
ACCAACAGTGCAAAGGAAGCTTTTGAGAAAGCTGTGTTTACCAAGACCCA
GAAAACAAATGCACGGACCGAAGCGGAGATAGCTATGCTTGAGGGCAACG
TTATTGTTTACAAGTTTGTTCAAGACCTTCACTTTTTTGTCACTGGGGGT
GAAGATGAAAATGAGCTGATCTTAGCCACAGTTCTTCAGGGATTTTTTGA
TGCAGTTGGTCTTCTTCTTAGAGGCAATGTGGACAAGAAGGAGGCTCTTG
AGAACTTGGATCTTATCTTGTTGTGCCTTGATGAAATTGTTGATGGAGGT
ATCATTCTGGAAACTGATGCAAATGTCATTGCTGGAAAGGTTGCAAGCCA
TAGTGTGGATGTCGGAGCTCCTTTGTCTGAGCAGACAATTAGTCAAGCAT
TGGCTACTGCCCGTGAACATTTAACAAGATCCCTTCTTAAGTGAT
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