CX308012
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX308012 vs. ExPASy Swiss-Prot
Match: COPZ2_MOUSE (Coatomer subunit zeta-2 OS=Mus musculus GN=Copz2 PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 1.788e-26 Identity = 69/172 (40.12%), Postives = 102/172 (59.30%), Query Frame = 1 Query: 76 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 591 +IK + +LD++G+R+ KYY + +P+ + FEK VF KT +RTE+EIA L G IVYK D+ +V G ENEL+L +VL FD++ +LR NV+K+ VDGG+ILE+D + KV + D G L+EQ+++Q L +A+E + SLLK Sbjct: 40 TIKAVFILDNDGRRLLAKYYDDTFPSVKEQMVFEKNVFNKT----SRTESEIAFLGGMTIVYKSSIDIFLYVVGSSSENELMLMSVLACLFDSLSHILRKNVEKRWLLENMDGAFLVLDETVDGGVILESDPQQVIQKVNFRTDDSG--LTEQSVAQVLQSAKEQIKWSLLK 205
BLAST of CX308012 vs. ExPASy Swiss-Prot
Match: COPZ2_HUMAN (Coatomer subunit zeta-2 OS=Homo sapiens GN=COPZ2 PE=2 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 2.582e-25 Identity = 68/172 (39.53%), Postives = 101/172 (58.72%), Query Frame = 1 Query: 76 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHLTRSLLK 591 +IK + +LD++G+R+ KYY + +P+ + FEK VF KT +RTE+EIA G IVYK DL +V G ENEL+L +VL F+++ +LR NV+K+ VDGG+ILE+D + KV + D G L+EQ+++Q L +A+E + SLLK Sbjct: 45 TIKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKT----SRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKRWLLENMDGAFLVLDEIVDGGVILESDPQQVIQKVNFRADDGG--LTEQSVAQVLQSAKEQIKWSLLK 210
BLAST of CX308012 vs. ExPASy Swiss-Prot
Match: COPZ_CAEEL (Probable coatomer subunit zeta OS=Caenorhabditis elegans GN=F59E10.3 PE=2 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 5.953e-22 Identity = 67/177 (37.85%), Postives = 97/177 (54.80%), Query Frame = 1 Query: 76 SIKNILLLDSEGKRVAVKYYSND-WPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQA----LATAREHLTRSLLK 591 SIK I++LD +G RV KYY + T ++AFEK++F+KT + T A+I +L+G +Y+ DL+F+V G ENEL L L +DAV ++LR NV+KK D GII+ETDA + + A S +V S+Q++SQ + +A E SLLK Sbjct: 13 SIKGIVILDQDGNRVLAKYYDRTTFGTVKEQKAFEKSLFSKTSRN---TSADILLLDGVTCLYRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLRKNVEKKALIDSMDTIMLIIDEICDEGIIMETDAQAVVQRTALKSDEVS--FSDQSVSQIGFSFMKSANEQFKWSLLK 184
BLAST of CX308012 vs. ExPASy Swiss-Prot
Match: COPZA_DICDI (Probable coatomer subunit zeta-A OS=Dictyostelium discoideum GN=copza PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 5.215e-18 Identity = 55/168 (32.74%), Postives = 94/168 (55.95%), Query Frame = 1 Query: 76 SIKNILLLDS-EGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAV-GLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVASHSVDVGAPLSEQTISQALATAREHL 573 ++ + +LDS +G+RV KYY+ND+ T ++AFEK VF KT K N EI +L+ ++VYK ++ ++ G +++NE+ L VL F D + L ++KK +DGGII+E+D+ VIA +V + D +++I++A+ + +E L Sbjct: 7 TVTSFFILDSSKGERVIAKYYNNDFDTLQKQKAFEKKVFDKTSKVN--FGGEITLLDNYLVVYKSFSNIIIYMVGDQNQNEIALLYVLNSFIDTLQNLFENSQINKKLILDGINYTLLTLDEIIDGGIIMESDSAVIADRVGIKAPDNDD--LDESINKAVTSVKEQL 170
BLAST of CX308012 vs. ExPASy Swiss-Prot
Match: COPZ_SCHPO (Probable coatomer subunit zeta OS=Schizosaccharomyces pombe GN=ret3 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 4.881e-16 Identity = 59/188 (31.38%), Postives = 91/188 (48.40%), Query Frame = 1 Query: 67 TCPSIKNILLLDSEGKRVAVKYYS-------NDWPTNSAKE--AFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKV----ASHSVDVGAPLSEQTISQALATAREHLTRSLLK 591 T ++ L+LDS GKR+ KYY+ NS KE FEK +F KT KT + +I +G ++V V D+ F++ GG +ENE++L L+ DA+ LL + DK+ +D G+ILET+ +IA +V S + + + E + ARE +T +LK Sbjct: 4 TLYAVNAFLILDSSGKRIFTKYYAPPHLKEGEGGVFNSVKEEKTFEKGLFEKTWKT----QNDILTYDGKLVVMLTVMDVIFYIVGGMEENEVMLYECLRSIRDALELLFKYVPDKRTLLENYDQLVIVVDETIDDGVILETEPALIAARVTKGPVSEAQAIVSDFKEMGFMNSFQKAREKITERILK 187
BLAST of CX308012 vs. ExPASy Swiss-Prot
Match: COPZ_YEAST (Coatomer subunit zeta OS=Saccharomyces cerevisiae GN=RET3 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 3.868e-13 Identity = 44/150 (29.33%), Postives = 77/150 (51.33%), Query Frame = 1 Query: 76 SIKNILLLDSEGKRVAVKYYSNDWPT--------NSAKEA--FEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKKEAXXXXXXXXXXXXXXVDGGIILETDANVIAGKVA 495 +++ +L+LD +G+R+ KYY + NS K+ FEK ++ KT K ++EI + E ++++YK D+ ++ +ENE++L A+ L+L +DKK +D G+ILETD+N IA +V+ Sbjct: 8 TVQAVLILDQQGERIYAKYYQPPHRSDEGHQLLFNSVKKQKEFEKQLYRKTHKQ----DSEILIFEDHLVLYKEYIDITIYLVASLEENEIVLQQGFSAIRGALDLILNSGMDKKNIQENYDMVLLAIDETIDNGVILETDSNTIASRVS 153 The following BLAST results are available for this feature:
BLAST of CX308012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 16
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Sequences
The
following sequences are available for this feature:
EST sequence >CX308012 ID=CX308012; Name=CX308012; organism=Citrus clementina; type=EST; length=595bpback to top |