CX308025

Overview
NameCX308025
Unique NameCX308025
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length593
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308025 vs. ExPASy Swiss-Prot
Match: COMT1_EUCGU (Caffeic acid 3-O-methyltransferase OS=Eucalyptus gunnii GN=OMT PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.222e-28
Identity = 58/103 (56.31%), Postives = 71/103 (68.93%), Query Frame = 1
Query:    1 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 309
            AIF+KWI HDW D+HC K LKNCY ++P  GKVIV E +LP  P+TS+ +K+  HID +M+  NPGGKERT+ EF TLA GAGF G +         VMEF K
Sbjct:  262 AIFMKWICHDWSDDHCAKFLKNCYDALPNIGKVIVAECVLPVYPDTSLATKNVIHIDCIMLAHNPGGKERTQKEFETLAKGAGFQGFQVMCCAFGTHVMEFLK 364          
BLAST of CX308025 vs. ExPASy Swiss-Prot
Match: COMT1_MAIZE (Caffeic acid 3-O-methyltransferase OS=Zea mays PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.373e-28
Identity = 54/103 (52.43%), Postives = 72/103 (69.90%), Query Frame = 1
Query:    1 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 309
            AI +KWILHDW D HC  LLKNCY ++PE+GKVIVVE +LP     + +++   H+D++M+  NPGGKER + EF  LA GAGFSG ++  +  N W +EF K
Sbjct:  262 AILMKWILHDWSDAHCATLLKNCYDALPENGKVIVVECVLPVNTEATPKAQGVFHVDMIMLAHNPGGKERYEREFRELAKGAGFSGFKATYIYANAWAIEFIK 364          
BLAST of CX308025 vs. ExPASy Swiss-Prot
Match: COMT1_SACOF (Caffeic acid 3-O-methyltransferase OS=Saccharum officinarum GN=COMT PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.935e-27
Identity = 52/103 (50.49%), Postives = 71/103 (68.93%), Query Frame = 1
Query:    1 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 309
            AI +KWILHDW D HC  LLKNCY ++PE+GKVI+VE +LP       +++   H+D++M+  NPGG+ER + EF  LA GAGFSG ++  +  N W +EF K
Sbjct:  260 AILMKWILHDWSDAHCATLLKNCYDALPENGKVIIVECVLPVNTEAVPKAQGVFHVDMIMLAHNPGGRERYEREFHDLAKGAGFSGFKATYIYANAWAIEFIK 362          
BLAST of CX308025 vs. ExPASy Swiss-Prot
Match: SMT_COPJA ((S)-scoulerine 9-O-methyltransferase OS=Coptis japonica GN=SMT PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.389e-23
Identity = 52/102 (50.98%), Postives = 71/102 (69.61%), Query Frame = 1
Query:    4 IFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 309
            I LKW+LHDWDD+  +K+LKNC+K++PE+G VIV+E +LP+V   + ES +    D+LMM  NPGGKERT  EF  LA  AGF+  +   ++    VMEF+K
Sbjct:  277 ILLKWVLHDWDDDRSIKILKNCWKALPENGTVIVIEFVLPQVLGNNAESFNALTPDLLMMALNPGGKERTTIEFDGLAKAAGFAETKFFPISQGLHVMEFHK 378          
BLAST of CX308025 vs. ExPASy Swiss-Prot
Match: IMT1_MESCR (Inositol 4-methyltransferase OS=Mesembryanthemum crystallinum GN=IMT1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.389e-23
Identity = 47/103 (45.63%), Postives = 68/103 (66.02%), Query Frame = 1
Query:    1 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFYK 309
            AIF+KW+LHDW DEHC+K+L  CY+S+ + GK+I+VE ++P +P  ++ES     +D   +  N GGKER+K +F  LA+  GFS +       + WVME YK
Sbjct:  262 AIFMKWVLHDWSDEHCVKILNKCYESLAKGGKIILVESLIPVIPEDNLESHMVFSLDCHTLVHNQGGKERSKEDFEALASKTGFSTVDVICCAYDTWVMELYK 364          
BLAST of CX308025 vs. ExPASy Swiss-Prot
Match: COMT1_EUCGL (Caffeic acid 3-O-methyltransferase (Fragment) OS=Eucalyptus globulus GN=COMT1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.603e-19
Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = 1
Query:    1 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERT 213
            A+F+KWI HDW DEHC KLLKNCY ++P +G+VIV E +LP  P+ S+ +K   H+D +M+T   GGKERT
Sbjct:  243 AVFMKWICHDWSDEHCAKLLKNCYDALPVNGRVIVAEYILPAYPDQSLSTKGVIHMDCIMLTHFSGGKERT 313          
BLAST of CX308025 vs. ExPASy Swiss-Prot
Match: CHOMT_MEDSA (Isoliquiritigenin 2'-O-methyltransferase OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.342e-17
Identity = 47/104 (45.19%), Postives = 68/104 (65.38%), Query Frame = 1
Query:    1 AIFLKWILHDWDDEHCLKLLKNCYKSVPEDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR-SDLVTGNFWVMEFYK 309
            A+ LK + H+W DE C++ L NC+K++  +GKVI+VE +LPE PNTS ESK  S +D LM     GG+ERT+ ++  L+  +GFS  + +     +  VMEFYK
Sbjct:  270 AMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI-TVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372          
BLAST of CX308025 vs. ExPASy Swiss-Prot
Match: 6OMT_COPJA ((RS)-norcoclaurine 6-O-methyltransferase OS=Coptis japonica PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.823e-13
Identity = 43/103 (41.75%), Postives = 65/103 (63.11%), Query Frame = 1
Query:    1 AIFLKWILHDWDDEHCLKLLKNCYKSVP-EDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFY 306
            AI +K ILHDWDD+ C+++LK C ++VP + GKVI+V+++L  V +    +K    +D+ MM  N GGKERT+ E+  L   AG+ G +   +T    V+E Y
Sbjct:  245 AIMMKCILHDWDDKECIEILKRCKEAVPVKGGKVIIVDIVL-NVQSEHPYTKMRLTLDLDMML-NTGGKERTEEEWKKLIHDAGYKGHKITQITAVQSVIEAY 345          
BLAST of CX308025 vs. ExPASy Swiss-Prot
Match: 4OMT_COPJA (3'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltransferase OS=Coptis japonica PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.521e-13
Identity = 41/89 (46.07%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    1 AIFLKWILHDWDDEHCLKLLKNCYKSVPED-GKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIR 264
            AI LK ILHDW+DE  +K+LK C  +VP+D GKVI+V++ L E  +  + S +   +D+ M+  N GGKERTK  +  +   AGFSG +
Sbjct:  249 AIILKLILHDWNDEDSIKILKQCRNAVPKDGGKVIIVDVALDEESDHEL-SSTRLILDIDMLV-NTGGKERTKEVWEKIVKSAGFSGCK 335          
BLAST of CX308025 vs. ExPASy Swiss-Prot
Match: ZRP4_MAIZE (O-methyltransferase ZRP4 OS=Zea mays GN=ZRP4 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 37/105 (35.24%), Postives = 60/105 (57.14%), Query Frame = 1
Query:    1 AIFLKWILHDWDDEHCLKLLKNCYKSVP---EDGKVIVVELMLPEVPNTSIESKSNSHIDVLMMTQNPGGKERTKHEFMTLATGAGFSGIRSDLVTGNFWVMEFY 306
            A+ LK +LHDWD + C+K+LKNC K++P     GKVI++ +++   P+     +  +  DV +M  N  G ER + E+  + + AG+S  R   V G   ++E Y
Sbjct:  261 AVLLKSVLHDWDHDDCVKILKNCKKAIPPREAGGKVIIINMVVGAGPSDMKHKEMQAIFDVYIMFIN--GMERDEQEWSKIFSEAGYSDYRIIPVLGVRSIIEVY 363          
The following BLAST results are available for this feature:
BLAST of CX308025 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
COMT1_EUCGU3.222e-2856.31Caffeic acid 3-O-methyltransferase OS=Eucalyptus g... [more]
COMT1_MAIZE9.373e-2852.43Caffeic acid 3-O-methyltransferase OS=Zea mays PE=... [more]
COMT1_SACOF7.935e-2750.49Caffeic acid 3-O-methyltransferase OS=Saccharum of... [more]
SMT_COPJA2.389e-2350.98(S)-scoulerine 9-O-methyltransferase OS=Coptis jap... [more]
IMT1_MESCR2.389e-2345.63Inositol 4-methyltransferase OS=Mesembryanthemum c... [more]
COMT1_EUCGL1.603e-1956.34Caffeic acid 3-O-methyltransferase (Fragment) OS=E... [more]
CHOMT_MEDSA3.342e-1745.19Isoliquiritigenin 2'-O-methyltransferase OS=Medica... [more]
6OMT_COPJA3.823e-1341.75(RS)-norcoclaurine 6-O-methyltransferase OS=Coptis... [more]
4OMT_COPJA6.521e-1346.073'-hydroxy-N-methyl-(S)-coclaurine 4'-O-methyltran... [more]
ZRP4_MAIZE7.972e-1135.24O-methyltransferase ZRP4 OS=Zea mays GN=ZRP4 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionC20005B11SK OF2 Citrus clementina cDNA clone C20005B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308025 ID=CX308025; Name=CX308025; organism=Citrus clementina; type=EST; length=593bp
GCCATTTTTCTGAAGTGGATACTGCACGATTGGGACGATGAACATTGCTT
GAAGTTGTTGAAGAATTGCTACAAAAGCGTTCCAGAAGATGGAAAGGTAA
TCGTTGTGGAGTTAATGCTTCCAGAAGTTCCTAATACAAGCATTGAATCA
AAATCAAATTCCCATATTGACGTGCTTATGATGACTCAAAATCCCGGTGG
AAAGGAGAGAACAAAGCATGAATTCATGACCCTGGCTACTGGCGCTGGTT
TTAGTGGGATCAGATCTGATCTTGTTACTGGTAATTTCTGGGTTATGGAG
TTCTATAAGTAGAGTGCTTGCCCATGCATCCTAGAGACGAGCAACAAGCC
ATGCATTTAACAAGCTTCCAACGTACCATAGCCATGCTTGAGAAGAGGAG
TCTACGACTTAGTAATAAGTTTCTTTGAAATAAATGGGTGCTTGAGACGT
CGTCTATTAACTACCTGTGCTATATTGCCCATATTTCCTTTTATTTCTCG
TATTTCATGTGTTATTTTCTAGAGTGTCTTTTTTTGTTCTTAATGTAGTT
AATACTGTAGATCATATGTTTTCAATTGGCTCTTATAAAATGC
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