CX308026

Overview
NameCX308026
Unique NameCX308026
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length490
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308026 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSJ (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. japonica GN=SAMDC PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 6.266e-33
Identity = 74/146 (50.68%), Postives = 95/146 (65.07%), Query Frame = 2
Query:   20 MTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLK--GYSCGEKIYEELGNNGSLIYYSFSRTD----CSTSPRSILKC 439
            MT+ SGI  I+P+ EICDF+F+PCGYSMN+I G A STIHVTPEDGFSYAS+E VG+D   +    L++RVL CF P+EFSVA+ +   G  H  T+  +L    Y C   + +EL   G LIY SF  T+       SP+S+L C
Sbjct:  217 MTKLSGISDIIPEMEICDFDFEPCGYSMNAIHGSAFSTIHVTPEDGFSYASYEVVGFDASTLAYGDLVKRVLRCFGPSEFSVAV-TIFGGHGHAGTWAKELNADAYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVLHC 361          
BLAST of CX308026 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSI (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. indica GN=SAMDC PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 1.823e-32
Identity = 74/146 (50.68%), Postives = 95/146 (65.07%), Query Frame = 2
Query:   20 MTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTFMLDLK--GYSCGEKIYEELGNNGSLIYYSFSRTD----CSTSPRSILKC 439
            MT+ SGI  I+P+ EICDF+F+PCGYSMN+I G A STIHVTPEDGFSYAS+E VG+D   +    L++RVL CF P+EFSVA+ +   G  H  T+  +L    Y C   + +EL   G LIY SF  T+       SP+S+L C
Sbjct:  217 MTKLSGISDIIPEMEICDFDFEPCGYSMNAIHGLAFSTIHVTPEDGFSYASYEVVGFDASTLAYGDLVKRVLRCFGPSEFSVAV-TIFGGHGHAGTWAKELNADAYKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVLHC 361          
BLAST of CX308026 vs. ExPASy Swiss-Prot
Match: DCAM_MAIZE (S-adenosylmethionine decarboxylase proenzyme OS=Zea mays GN=SAMDC PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 4.062e-32
Identity = 71/144 (49.31%), Postives = 95/144 (65.97%), Query Frame = 2
Query:   20 MTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTF--MLDLKGYSCGEKIYEELGNNGSLIYYSFSRTD--CSTSPRSILKC 439
            MT+ SGI +I+P+ EICDF+F+PCGYSMN+I G A STIHVTPEDGFSYAS+E +G D   +    L++RVL CF P+EFSVA+ +   G  H  T+   L  + Y C   + +EL   G L+Y SF   +   +TSP+S+  C
Sbjct:  217 MTKLSGISEIIPEMEICDFDFEPCGYSMNAIHGSAFSTIHVTPEDGFSYASYEVMGLDATALSYGDLVKRVLRCFGPSEFSVAV-TIFGGRGHAGTWGKALGAEVYDCNNMVEQELPGGGLLVYQSFCAAEDAVATSPKSVFHC 359          
BLAST of CX308026 vs. ExPASy Swiss-Prot
Match: DCAM_HORCH (S-adenosylmethionine decarboxylase proenzyme OS=Hordeum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.016e-31
Identity = 71/146 (48.63%), Postives = 94/146 (64.38%), Query Frame = 2
Query:   20 MTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGDTF--MLDLKGYSCGEKIYEELGNNGSLIYYSFSRTD----CSTSPRSILKC 439
            MT+ SGI  I+P+ E+CDF+F+PCGYSMN+I G A STIHVTPEDGFSYAS+E  G D   +    +++RVL CF P+EFSVA+ +   G  H  T+   LD + Y C   + +EL   G LIY SF+  +     + SPRS+  C
Sbjct:  210 MTKLSGISDIIPEMEVCDFDFEPCGYSMNAINGSAFSTIHVTPEDGFSYASYEVQGMDASALAYGDIVKRVLRCFGPSEFSVAV-TIFGGRGHAATWGKKLDAEAYDCNNVVEQELPCGGVLIYQSFAANEELAVSAGSPRSVFHC 354          
BLAST of CX308026 vs. ExPASy Swiss-Prot
Match: DCAM_DICDI (S-adenosylmethionine decarboxylase proenzyme OS=Dictyostelium discoideum GN=amd1 PE=3 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 6.515e-14
Identity = 46/131 (35.11%), Postives = 69/131 (52.67%), Query Frame = 2
Query:   23 TEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSDIVGDEHGD---TFMLDLKGYSCGEKIYEELGNNGSLIYYSFSRTD 406
            T +SGI  +LP S I DF+FDPCGYSMN +  +   TIH+TPE   SY SF+    +  +     LL +VL  FKP  F+ AL+++  G   GD    F +++  Y+   K          ++  ++ + D
Sbjct:  229 TVNSGIADLLPGSMIDDFQFDPCGYSMNGLLNEFYWTIHITPESHCSYVSFDT---NVALADYNQLLAKVLNVFKPGRFTAALYAE-DGAPCGDPYTAFDVNVPSYAIQNKTVHGFDGGYDVVVSNYQQLD 355          
BLAST of CX308026 vs. ExPASy Swiss-Prot
Match: DCAM_DROME (S-adenosylmethionine decarboxylase proenzyme OS=Drosophila melanogaster GN=SamDC PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.964e-12
Identity = 39/87 (44.83%), Postives = 51/87 (58.62%), Query Frame = 2
Query:   23 TEDSGIRKILPKSEICDFEFDPCGYSMNSI-EGDAVSTIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVALHSD 280
            T  SGI  ILP   I DF FDPCGYSMN I +     TIH+TPE+ FSY SFE    +  +     L+ +V+  FKP +F V + ++
Sbjct:  212 TVKSGIDTILPTMHIDDFLFDPCGYSMNGINDKGEYMTIHITPENQFSYVSFET---NVALSNYRKLINQVINTFKPGKFIVTIFAN 295          
BLAST of CX308026 vs. ExPASy Swiss-Prot
Match: DCAM_HUMAN (S-adenosylmethionine decarboxylase proenzyme OS=Homo sapiens GN=AMD1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 3.952e-11
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 2
Query:   20 MTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 271
            +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct:  203 VTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284          
BLAST of CX308026 vs. ExPASy Swiss-Prot
Match: DCAM_BOVIN (S-adenosylmethionine decarboxylase proenzyme OS=Bos taurus GN=AMD1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.952e-11
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 2
Query:   20 MTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 271
            +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct:  203 VTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284          
BLAST of CX308026 vs. ExPASy Swiss-Prot
Match: DCAM_RAT (S-adenosylmethionine decarboxylase proenzyme OS=Rattus norvegicus GN=Amd1 PE=2 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 5.162e-11
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 2
Query:   20 MTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 271
            +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct:  203 VTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284          
BLAST of CX308026 vs. ExPASy Swiss-Prot
Match: DCAM_MESAU (S-adenosylmethionine decarboxylase proenzyme OS=Mesocricetus auratus GN=AMD1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.162e-11
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 2
Query:   20 MTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFEAVGYDFEVVKLTPLLERVLACFKPAEFSVAL 271
            +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE    +        L+ +V+  FKP +F   L
Sbjct:  203 VTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFET---NLSQTSYDDLIRKVVEVFKPGKFVTTL 284          
The following BLAST results are available for this feature:
BLAST of CX308026 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
DCAM_ORYSJ6.266e-3350.68S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM_ORYSI1.823e-3250.68S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM_MAIZE4.062e-3249.31S-adenosylmethionine decarboxylase proenzyme OS=Ze... [more]
DCAM_HORCH2.016e-3148.63S-adenosylmethionine decarboxylase proenzyme OS=Ho... [more]
DCAM_DICDI6.515e-1435.11S-adenosylmethionine decarboxylase proenzyme OS=Di... [more]
DCAM_DROME7.964e-1244.83S-adenosylmethionine decarboxylase proenzyme OS=Dr... [more]
DCAM_HUMAN3.952e-1142.35S-adenosylmethionine decarboxylase proenzyme OS=Ho... [more]
DCAM_BOVIN3.952e-1142.35S-adenosylmethionine decarboxylase proenzyme OS=Bo... [more]
DCAM_RAT5.162e-1142.35S-adenosylmethionine decarboxylase proenzyme OS=Ra... [more]
DCAM_MESAU5.162e-1142.35S-adenosylmethionine decarboxylase proenzyme OS=Me... [more]

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Properties
Property NameValue
Genbank descriptionC20005B12SK OF2 Citrus clementina cDNA clone C20005B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308026 ID=CX308026; Name=CX308026; organism=Citrus clementina; type=EST; length=490bp
TGAAAGCTCAGTGGCTCTGATGACCGAGGACTCTGGCATCAGAAAGATTC
TTCCAAAATCTGAGATTTGTGATTTTGAGTTTGACCCTTGTGGTTACTCC
ATGAATAGTATTGAAGGGGATGCAGTATCTACTATCCACGTCACACCTGA
AGATGGTTTCAGTTATGCAAGTTTTGAGGCTGTGGGTTATGATTTTGAGG
TTGTGAAGTTGACTCCCTTGCTTGAGAGGGTGCTTGCTTGCTTCAAACCC
GCTGAGTTTTCTGTTGCTCTGCATTCTGACATTGTTGGCGATGAACATGG
AGACACCTTCATGCTGGACTTGAAGGGATATTCTTGTGGAGAAAAGATAT
ATGAAGAGCTCGGTAATAATGGTTCGCTGATCTACTACAGCTTTTCGAGG
ACTGATTGCTCCACATCTCCTAGGTCAATCTTGAAATGCTGTTGGAGCGA
GGACGAAAAGGACGAGGAAGTTGAAGGGAAATAGTGTCCC
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