CX308518

Overview
NameCX308518
Unique NameCX308518
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF_CUCME (Profilin OS=Cucumis melo PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.026e-64
Identity = 112/131 (85.50%), Postives = 123/131 (93.89%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQ YVD+HL+CEIEGNHL++AAIIG DGSVWAQS+NFPQLKPEE+ GI+ DF +PGTLAPTGLY+GGTKYMVIQGEPGAVIRGKKGPGG T+KKT  AL+IGIYDEPMTPGQCNMIVERLGDYLIDQGL
Sbjct:    1 MSWQVYVDEHLMCEIEGNHLTSAAIIGQDGSVWAQSQNFPQLKPEEVAGIVGDFADPGTLAPTGLYIGGTKYMVIQGEPGAVIRGKKGPGGATVKKTGMALVIGIYDEPMTPGQCNMIVERLGDYLIDQGL 131          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF5_MAIZE (Profilin-5 OS=Zea mays GN=PRO5 PE=1 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 6.648e-64
Identity = 110/130 (84.62%), Postives = 123/130 (94.62%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 443
            MSWQAYVDDHLLC+IEG HLSAAAI+GHDGSVWAQSENFP+LKPEE+ G++ DF+EPGTLAPTGL++GGTKYMVIQGEPG VIRGKKG GG+TIKKT  +LIIGIYDEPMTPGQCNM+VERLGDYLI+QG
Sbjct:    1 MSWQAYVDDHLLCDIEGQHLSAAAIVGHDGSVWAQSENFPELKPEEVAGMIKDFDEPGTLAPTGLFVGGTKYMVIQGEPGVVIRGKKGTGGITIKKTGMSLIIGIYDEPMTPGQCNMVVERLGDYLIEQG 130          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROFX_ORYSJ (Profilin LP04 OS=Oryza sativa subsp. japonica GN=Os06g0152100 PE=2 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.481e-63
Identity = 110/130 (84.62%), Postives = 122/130 (93.85%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 443
            MSWQAYVDDHL+CEI+GNHL+AAAI+GHDGSVWAQS NFPQ KPEEITGIM DF+EPG+LAPTGL+LGGTKYMVIQGEPG VIRGKKG GG+ +KKT  +LI+GIYDEPMTPGQCNMIVERLGDYLI+QG
Sbjct:    1 MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSLAPTGLFLGGTKYMVIQGEPGVVIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQCNMIVERLGDYLIEQG 130          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROFX_ORYSI (Profilin LP04 OS=Oryza sativa subsp. indica GN=OsI_020954 PE=1 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 1.481e-63
Identity = 110/130 (84.62%), Postives = 122/130 (93.85%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 443
            MSWQAYVDDHL+CEI+GNHL+AAAI+GHDGSVWAQS NFPQ KPEEITGIM DF+EPG+LAPTGL+LGGTKYMVIQGEPG VIRGKKG GG+ +KKT  +LI+GIYDEPMTPGQCNMIVERLGDYLI+QG
Sbjct:    1 MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSLAPTGLFLGGTKYMVIQGEPGVVIRGKKGTGGICVKKTGLSLILGIYDEPMTPGQCNMIVERLGDYLIEQG 130          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF_LITCN (Profilin OS=Litchi chinensis PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 1.934e-63
Identity = 110/131 (83.97%), Postives = 121/131 (92.37%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQ YVDDHL+CE +G HL+AAAIIGHDGSVWAQS NFPQ KP EI  IM DF+EPG+LAPTGL+LGGTKYMVIQGEPGAVIRGKKGPGG+T+KKT+ ALIIGIYDEPMTPGQCNM+VERLGDYL+DQGL
Sbjct:    1 MSWQTYVDDHLMCETDGQHLTAAAIIGHDGSVWAQSANFPQFKPAEIAAIMKDFDEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKGPGGITVKKTTQALIIGIYDEPMTPGQCNMVVERLGDYLVDQGL 131          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF4_MAIZE (Profilin-4 OS=Zea mays GN=PRO4 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 3.300e-63
Identity = 108/130 (83.08%), Postives = 123/130 (94.62%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 443
            MSWQAYVD+HL+CEIEG HLSAAAI+GHDGSVWAQSE+FP+LKPEE+ GI+ DF+EPGTLAPTGL++GGTKYMVIQGEPG VIRGKKG GG+TIKKT  +LIIG+YDEPMTPGQCNM+VERLGDYLI+QG
Sbjct:    1 MSWQAYVDEHLMCEIEGQHLSAAAIVGHDGSVWAQSESFPELKPEEVAGIIKDFDEPGTLAPTGLFVGGTKYMVIQGEPGVVIRGKKGTGGITIKKTGMSLIIGVYDEPMTPGQCNMVVERLGDYLIEQG 130          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF2_SOLLC (Profilin-2 OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 3.300e-63
Identity = 114/131 (87.02%), Postives = 121/131 (92.37%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQ YVD+HLLCE EGNHL++AAIIG DG+VWAQS NFPQ KPEEITGIMNDF  PGTLAPTGLYLGGTKYMVIQGEP AVIRGKKGPGG+TIKKT+ ALIIGIYDEPMTPGQCNMIVERLGDYLI+Q L
Sbjct:    1 MSWQTYVDEHLLCENEGNHLTSAAIIGQDGTVWAQSANFPQFKPEEITGIMNDFAVPGTLAPTGLYLGGTKYMVIQGEPEAVIRGKKGPGGITIKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIEQSL 131          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF_CHEAL (Profilin OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 4.309e-63
Identity = 108/131 (82.44%), Postives = 124/131 (94.66%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQ YVDDHL+C+IEGNHLS+AAI+GHDG+VWAQS +FPQLKPEE++ IM DFNEPG+LAPTGL+LGGTKYMVIQGEPG VIRGKKGPGGVTIKKT+ ALIIGIY EPMTPGQCNM+VER+GDYL++QG+
Sbjct:    1 MSWQTYVDDHLMCDIEGNHLSSAAILGHDGTVWAQSPSFPQLKPEEVSAIMKDFNEPGSLAPTGLHLGGTKYMVIQGEPGDVIRGKKGPGGVTIKKTNQALIIGIYGEPMTPGQCNMVVERIGDYLVEQGM 131          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF_CAPAN (Profilin OS=Capsicum annuum PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 5.628e-63
Identity = 113/131 (86.26%), Postives = 120/131 (91.60%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQ YVDDHL+CEIEGN L++AAIIG DGSVWAQS  FPQ KPEEIT IMNDF EPGTLAPTGLYLGGTKYMVIQGE GAVIRGKKGPGG+T+KKT+ ALIIGIYDEPMTPGQCNMIVERLGDYLI+Q L
Sbjct:    1 MSWQTYVDDHLMCEIEGNRLTSAAIIGQDGSVWAQSATFPQFKPEEITAIMNDFAEPGTLAPTGLYLGGTKYMVIQGEAGAVIRGKKGPGGITVKKTNQALIIGIYDEPMTPGQCNMIVERLGDYLIEQSL 131          
BLAST of CX308518 vs. ExPASy Swiss-Prot
Match: PROF_ARAHY (Profilin OS=Arachis hypogaea PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 3.648e-62
Identity = 111/131 (84.73%), Postives = 121/131 (92.37%), Query Frame = 3
Query:   54 MSWQAYVDDHLLCEIEGNHLSAAAIIGHDGSVWAQSENFPQLKPEEITGIMNDFNEPGTLAPTGLYLGGTKYMVIQGEPGAVIRGKKGPGGVTIKKTSAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 446
            MSWQ YVD+HLLCEIEG+HLS+AAI+G DG VWAQS +FPQ KPEEIT IMNDF EPG+LAPTGLYLGGTKYMVIQGEPGA+I GKKGPGGVTI+KT+ ALIIGIYD+PMTPGQCNMIVERLGDYLID GL
Sbjct:    1 MSWQTYVDNHLLCEIEGDHLSSAAILGQDGGVWAQSSHFPQFKPEEITAIMNDFAEPGSLAPTGLYLGGTKYMVIQGEPGAIIPGKKGPGGVTIEKTNQALIIGIYDKPMTPGQCNMIVERLGDYLIDTGL 131          
The following BLAST results are available for this feature:
BLAST of CX308518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
PROF_CUCME1.026e-6485.50Profilin OS=Cucumis melo PE=1 SV=1[more]
PROF5_MAIZE6.648e-6484.62Profilin-5 OS=Zea mays GN=PRO5 PE=1 SV=1[more]
PROFX_ORYSJ1.481e-6384.62Profilin LP04 OS=Oryza sativa subsp. japonica GN=O... [more]
PROFX_ORYSI1.481e-6384.62Profilin LP04 OS=Oryza sativa subsp. indica GN=OsI... [more]
PROF_LITCN1.934e-6383.97Profilin OS=Litchi chinensis PE=1 SV=1[more]
PROF4_MAIZE3.300e-6383.08Profilin-4 OS=Zea mays GN=PRO4 PE=1 SV=1[more]
PROF2_SOLLC3.300e-6387.02Profilin-2 OS=Solanum lycopersicum PE=1 SV=1[more]
PROF_CHEAL4.309e-6382.44Profilin OS=Chenopodium album PE=1 SV=1[more]
PROF_CAPAN5.628e-6386.26Profilin OS=Capsicum annuum PE=1 SV=1[more]
PROF_ARAHY3.648e-6284.73Profilin OS=Arachis hypogaea PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC20010H03SK OF2 Citrus clementina cDNA clone C20010H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308518 ID=CX308518; Name=CX308518; organism=Citrus clementina; type=EST; length=612bp
AAAATAAAAAAAAATTCACAGAGAAATCAGAGGAATCTTCAAAGCAGAAA
AAGATGTCGTGGCAAGCTTACGTCGATGATCATCTGTTGTGTGAAATTGA
GGGTAACCATCTCTCAGCTGCCGCTATCATCGGCCACGACGGCAGCGTTT
GGGCCCAGAGTGAAAACTTCCCTCAGTTAAAACCTGAGGAAATAACTGGT
ATCATGAATGACTTTAATGAACCTGGAACACTAGCACCAACTGGACTGTA
TCTTGGTGGCACAAAATATATGGTGATCCAGGGTGAGCCAGGTGCTGTCA
TCCGAGGGAAGAAGGGCCCTGGTGGTGTTACCATCAAGAAGACCAGTGCG
GCCTTAATCATTGGAATCTATGATGAGCCGATGACCCCTGGGCAGTGCAA
CATGATTGTTGAAAGGCTTGGTGATTATCTCATTGATCAGGGTCTTTAGG
TGGTTTGCATGTCCGCTAATTTGTTTCATTTCTTGGCTTCCCTAAAAAGC
TCGCACTGTTGAACTTCGGTGTAATAATATTACAGTATTCAAAGTTATGG
GAACTGTGTGTGGAAAGGAAAGGTTTGGTGCATGTGGAAGTTCTTGATAT
CATCTATTTGTA
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