CX308522
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: RECG_STAAN (ATP-dependent DNA helicase recG OS=Staphylococcus aureus (strain N315) GN=recG PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.691e-17 Identity = 50/166 (30.12%), Postives = 88/166 (53.01%), Query Frame = 1 Query: 1 GGQVFYVLPRIKGLEEPMDF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTG 471 G Q + + P I+ E D LQQ + + + HG+ + + +E M+KF+ I +L+ T +VE G+++ NA +++ D +FGL+ L+QLRGRVGR+D++++ L + S + GF+L+E+D+ +R G FG +Q+G Sbjct: 473 GRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVL------IASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSG 632
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: RECG_STAAM (ATP-dependent DNA helicase recG OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=recG PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 3.691e-17 Identity = 50/166 (30.12%), Postives = 88/166 (53.01%), Query Frame = 1 Query: 1 GGQVFYVLPRIKGLEEPMDF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTG 471 G Q + + P I+ E D LQQ + + + HG+ + + +E M+KF+ I +L+ T +VE G+++ NA +++ D +FGL+ L+QLRGRVGR+D++++ L + S + GF+L+E+D+ +R G FG +Q+G Sbjct: 473 GRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVL------IASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSG 632
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: RECG_SYNY3 (ATP-dependent DNA helicase recG OS=Synechocystis sp. (strain PCC 6803) GN=recG PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 4.820e-17 Identity = 49/166 (29.52%), Postives = 86/166 (51.81%), Query Frame = 1 Query: 1 GGQVFYVLPRIK---------GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTG 471 G QV+ + P I+ +EE ++ FP +I + HG+ S + E + F + +I++ T ++E G+D+ NA +++++ ++FGL+QL+QLRGRVGR +++ L KS + Q GF +AE D+ +R G G +Q+G Sbjct: 615 GRQVYIIFPAIEESEKLDIKAAVEEHKYLTEKIFPNFNIGLLHGRLKSAEKEAALTAFREKQTEIIVSTTVIEVGVDVPNATVMVIENAERFGLSQLHQLRGRVGRGSHQSYCLLVTNSKSNDARQRLGVMEQSQ------DGFFIAEMDLRLRGPGEFLGTKQSG 774
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: RECG_MYCLE (ATP-dependent DNA helicase recG OS=Mycobacterium leprae GN=recG PE=3 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 8.222e-17 Identity = 54/177 (30.51%), Postives = 83/177 (46.89%), Query Frame = 1 Query: 1 GGQVFYVLPRIKGLEEPMDFLQQAFPG-----------------VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQ---GFQLAEKDMGIRRFGTIFGEQQTG 471 G Q + V PRI E+P Q + P V +A+ HG+ + + + M F G I +L+CTN++E G+D+ NA ++V D +FG++QL+QLRGR+GR +P LL+ + GF LA+ D+ RR G + G Q+G Sbjct: 515 GRQAYVVAPRIDETEDPQKGGQNSRPSETADGLYARLRSGELANVRLALMHGRLSADEKDAAMMAFRAGEIDVLVCTNVIEVGVDVPNATIMLVMDADRFGISQLHQLRGRIGRGT--------HPSLCLLASWVSPGSPAGRRLCAVAETMDGFALADLDLKERREGDVLGRNQSG 683
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: RECG_BACSU (ATP-dependent DNA helicase recG OS=Bacillus subtilis GN=recG PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 8.222e-17 Identity = 49/166 (29.52%), Postives = 88/166 (53.01%), Query Frame = 1 Query: 1 GGQVFYVLPRIKGLE--------EPMDFLQQAFPGV-DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTG 471 G Q + + P I+ + + + L F G ++ + HG+ +S + ++ M +F+ +IL+ T +VE G+++ NA +++ D +FGL+QL+QLRGRVGR + ++ L KS + GF+L+EKD+ +R G FG++Q+G Sbjct: 466 GRQAYIICPLIEESDKLDVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDEKDQVMREFSANHCQILVSTTVVEVGVNVPNATIMVIYDADRFGLSQLHQLRGRVGRGEHQSFCILMADPKSETGKE------RMRIMSETNDGFELSEKDLELRGPGDFFGKKQSG 625
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: RECG_STAEQ (ATP-dependent DNA helicase recG OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=recG PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.074e-16 Identity = 48/166 (28.92%), Postives = 87/166 (52.41%), Query Frame = 1 Query: 1 GGQVFYVLPRIKGLE---------EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTG 471 G Q + + P I+ E E + LQ + + + HG+ + ++ M+KF++ I IL+ T +VE G+++ NA +++ D +FGL+ L+QLRGRVGR++ +++ L + S + GF+L+E+D+ +R G FG +Q+G Sbjct: 469 GRQAYVICPLIESSEHLEDVQNVVELYESLQSDYGNEKVGLLHGKMTAEDKDQVMQKFSEHEIDILVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVL------IASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSG 628
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: RECG_PASMU (ATP-dependent DNA helicase recG OS=Pasteurella multocida GN=recG PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.074e-16 Identity = 45/138 (32.61%), Postives = 77/138 (55.80%), Query Frame = 1 Query: 61 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTG 471 L++ P + I + HG+ + ++ M+ F Q I +L+ T ++E G+D+ NA+ +I+++ ++ GL+QL+QLRGRVGR + L Y P +S + GF ++EKD+ IR G + G +QTG Sbjct: 511 LRKILPHLRIGLVHGRMKPAEKQDIMQAFKQAEIDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGTTASFCVLMYKPPLGKISQKRLQVLRDTQ------DGFVISEKDLEIRGPGEVLGTKQTG 642
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: RECG_STAES (ATP-dependent DNA helicase recG OS=Staphylococcus epidermidis (strain ATCC 12228) GN=recG PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.832e-16 Identity = 48/166 (28.92%), Postives = 86/166 (51.81%), Query Frame = 1 Query: 1 GGQVFYVLPRIKGLEEPMDF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTG 471 G Q + + P I+ E D LQ + + + HG+ + ++ M+KF++ I IL+ T +VE G+++ NA +++ D +FGL+ L+QLRGRVGR++ +++ L + S + GF+L+E+D+ +R G FG +Q+G Sbjct: 469 GRQAYVICPLIESSEHLEDVQNVVALYESLQSDYGNEKVGLLHGKMSAEDKDQVMQKFSKHEIDILVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVL------IASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSG 628
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: RECG_HAEIN (ATP-dependent DNA helicase recG OS=Haemophilus influenzae GN=recG PE=3 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 2.392e-16 Identity = 44/138 (31.88%), Postives = 78/138 (56.52%), Query Frame = 1 Query: 61 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTG 471 L +A P ++I + HG+ ++ ++ M +F + +L+ T ++E G+D+ NA+ +I+++ ++ GL+QL+QLRGRVGR + L Y P +S + GF ++EKD+ IR G + G +QTG Sbjct: 511 LTKALPMLNIGLVHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGCTASFCVLMYKPPLGKVSQKRLQVLRDSQ------DGFVISEKDLEIRGPGEVLGTKQTG 642
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: RECG_BORBU (ATP-dependent DNA helicase recG OS=Borrelia burgdorferi GN=recG PE=3 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.551e-15 Identity = 50/165 (30.30%), Postives = 87/165 (52.73%), Query Frame = 1 Query: 1 GGQVFYVLPRIKGLE--EPMDF------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTG 471 G QV++V P I E E D L++ F + + H + S EE M+ F + IL+ T+++E G+D NA ++V+ ++FGL+ L+Q+RGRVGR++ ++ +L Y + + + GF++AE+D+ +R G +FG +Q G Sbjct: 472 GHQVYFVYPLISSSEKFELKDVNNMCLKLKEVFGEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVVEHAERFGLSTLHQIRGRVGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENL-----DGFKIAEEDLRLRGPGNLFGLEQAG 631 The following BLAST results are available for this feature:
BLAST of CX308522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 52
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX308522 ID=CX308522; Name=CX308522; organism=Citrus clementina; type=EST; length=491bpback to top |