CX308522

Overview
NameCX308522
Unique NameCX308522
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length491
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: RECG_STAAN (ATP-dependent DNA helicase recG OS=Staphylococcus aureus (strain N315) GN=recG PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.691e-17
Identity = 50/166 (30.12%), Postives = 88/166 (53.01%), Query Frame = 1
Query:    1 GGQVFYVLPRIKGLEEPMDF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTG 471
            G Q + + P I+  E   D          LQQ +    + + HG+  + + +E M+KF+   I +L+ T +VE G+++ NA  +++ D  +FGL+ L+QLRGRVGR+D++++  L      + S +                GF+L+E+D+ +R  G  FG +Q+G
Sbjct:  473 GRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVL------IASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSG 632          
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: RECG_STAAM (ATP-dependent DNA helicase recG OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=recG PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.691e-17
Identity = 50/166 (30.12%), Postives = 88/166 (53.01%), Query Frame = 1
Query:    1 GGQVFYVLPRIKGLEEPMDF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTG 471
            G Q + + P I+  E   D          LQQ +    + + HG+  + + +E M+KF+   I +L+ T +VE G+++ NA  +++ D  +FGL+ L+QLRGRVGR+D++++  L      + S +                GF+L+E+D+ +R  G  FG +Q+G
Sbjct:  473 GRQAYVICPLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEIDVLVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSDQQSYCVL------IASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSG 632          
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: RECG_SYNY3 (ATP-dependent DNA helicase recG OS=Synechocystis sp. (strain PCC 6803) GN=recG PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.820e-17
Identity = 49/166 (29.52%), Postives = 86/166 (51.81%), Query Frame = 1
Query:    1 GGQVFYVLPRIK---------GLEEPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTG 471
            G QV+ + P I+          +EE     ++ FP  +I + HG+  S + E  +  F +   +I++ T ++E G+D+ NA  +++++ ++FGL+QL+QLRGRVGR   +++  L    KS  + Q                GF +AE D+ +R  G   G +Q+G
Sbjct:  615 GRQVYIIFPAIEESEKLDIKAAVEEHKYLTEKIFPNFNIGLLHGRLKSAEKEAALTAFREKQTEIIVSTTVIEVGVDVPNATVMVIENAERFGLSQLHQLRGRVGRGSHQSYCLLVTNSKSNDARQRLGVMEQSQ------DGFFIAEMDLRLRGPGEFLGTKQSG 774          
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: RECG_MYCLE (ATP-dependent DNA helicase recG OS=Mycobacterium leprae GN=recG PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 8.222e-17
Identity = 54/177 (30.51%), Postives = 83/177 (46.89%), Query Frame = 1
Query:    1 GGQVFYVLPRIKGLEEPMDFLQQAFPG-----------------VDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQ---GFQLAEKDMGIRRFGTIFGEQQTG 471
            G Q + V PRI   E+P    Q + P                  V +A+ HG+  + + +  M  F  G I +L+CTN++E G+D+ NA  ++V D  +FG++QL+QLRGR+GR          +P   LL+                 +   GF LA+ D+  RR G + G  Q+G
Sbjct:  515 GRQAYVVAPRIDETEDPQKGGQNSRPSETADGLYARLRSGELANVRLALMHGRLSADEKDAAMMAFRAGEIDVLVCTNVIEVGVDVPNATIMLVMDADRFGISQLHQLRGRIGRGT--------HPSLCLLASWVSPGSPAGRRLCAVAETMDGFALADLDLKERREGDVLGRNQSG 683          
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: RECG_BACSU (ATP-dependent DNA helicase recG OS=Bacillus subtilis GN=recG PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.222e-17
Identity = 49/166 (29.52%), Postives = 88/166 (53.01%), Query Frame = 1
Query:    1 GGQVFYVLPRIKGLE--------EPMDFLQQAFPGV-DIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTG 471
            G Q + + P I+  +        +  + L   F G  ++ + HG+ +S + ++ M +F+    +IL+ T +VE G+++ NA  +++ D  +FGL+QL+QLRGRVGR + ++   L    KS    +                GF+L+EKD+ +R  G  FG++Q+G
Sbjct:  466 GRQAYIICPLIEESDKLDVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDEKDQVMREFSANHCQILVSTTVVEVGVNVPNATIMVIYDADRFGLSQLHQLRGRVGRGEHQSFCILMADPKSETGKE------RMRIMSETNDGFELSEKDLELRGPGDFFGKKQSG 625          
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: RECG_STAEQ (ATP-dependent DNA helicase recG OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=recG PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.074e-16
Identity = 48/166 (28.92%), Postives = 87/166 (52.41%), Query Frame = 1
Query:    1 GGQVFYVLPRIKGLE---------EPMDFLQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTG 471
            G Q + + P I+  E         E  + LQ  +    + + HG+  +   ++ M+KF++  I IL+ T +VE G+++ NA  +++ D  +FGL+ L+QLRGRVGR++ +++  L      + S +                GF+L+E+D+ +R  G  FG +Q+G
Sbjct:  469 GRQAYVICPLIESSEHLEDVQNVVELYESLQSDYGNEKVGLLHGKMTAEDKDQVMQKFSEHEIDILVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVL------IASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSG 628          
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: RECG_PASMU (ATP-dependent DNA helicase recG OS=Pasteurella multocida GN=recG PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.074e-16
Identity = 45/138 (32.61%), Postives = 77/138 (55.80%), Query Frame = 1
Query:   61 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTG 471
            L++  P + I + HG+    + ++ M+ F Q  I +L+ T ++E G+D+ NA+ +I+++ ++ GL+QL+QLRGRVGR    +   L Y P    +S +                GF ++EKD+ IR  G + G +QTG
Sbjct:  511 LRKILPHLRIGLVHGRMKPAEKQDIMQAFKQAEIDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGTTASFCVLMYKPPLGKISQKRLQVLRDTQ------DGFVISEKDLEIRGPGEVLGTKQTG 642          
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: RECG_STAES (ATP-dependent DNA helicase recG OS=Staphylococcus epidermidis (strain ATCC 12228) GN=recG PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.832e-16
Identity = 48/166 (28.92%), Postives = 86/166 (51.81%), Query Frame = 1
Query:    1 GGQVFYVLPRIKGLEEPMDF---------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTG 471
            G Q + + P I+  E   D          LQ  +    + + HG+  +   ++ M+KF++  I IL+ T +VE G+++ NA  +++ D  +FGL+ L+QLRGRVGR++ +++  L      + S +                GF+L+E+D+ +R  G  FG +Q+G
Sbjct:  469 GRQAYVICPLIESSEHLEDVQNVVALYESLQSDYGNEKVGLLHGKMSAEDKDQVMQKFSKHEIDILVSTTVVEVGVNVPNATFMMIYDADRFGLSTLHQLRGRVGRSEHQSYCVL------IASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSG 628          
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: RECG_HAEIN (ATP-dependent DNA helicase recG OS=Haemophilus influenzae GN=recG PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.392e-16
Identity = 44/138 (31.88%), Postives = 78/138 (56.52%), Query Frame = 1
Query:   61 LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFY-PDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTG 471
            L +A P ++I + HG+   ++ ++ M +F    + +L+ T ++E G+D+ NA+ +I+++ ++ GL+QL+QLRGRVGR    +   L Y P    +S +                GF ++EKD+ IR  G + G +QTG
Sbjct:  511 LTKALPMLNIGLVHGRMKPQEKQDVMMRFKNAELDLLVATTVIEVGVDVPNASLMIIENAERLGLSQLHQLRGRVGRGCTASFCVLMYKPPLGKVSQKRLQVLRDSQ------DGFVISEKDLEIRGPGEVLGTKQTG 642          
BLAST of CX308522 vs. ExPASy Swiss-Prot
Match: RECG_BORBU (ATP-dependent DNA helicase recG OS=Borrelia burgdorferi GN=recG PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.551e-15
Identity = 50/165 (30.30%), Postives = 87/165 (52.73%), Query Frame = 1
Query:    1 GGQVFYVLPRIKGLE--EPMDF------LQQAFPGVDIAIAHGQQYSRQLEETMEKFAQGAIKILICTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQXXXXXXXXXXXXXXGQGFQLAEKDMGIRRFGTIFGEQQTG 471
            G QV++V P I   E  E  D       L++ F    + + H +  S   EE M+ F    + IL+ T+++E G+D  NA  ++V+  ++FGL+ L+Q+RGRVGR++ ++  +L Y +    + +                GF++AE+D+ +R  G +FG +Q G
Sbjct:  472 GHQVYFVYPLISSSEKFELKDVNNMCLKLKEVFGEYVVDMLHSKLPSDLKEEIMKNFYSKKVDILVATSVIEVGIDCPNATCMVVEHAERFGLSTLHQIRGRVGRSNLQSFFFLLYKEPLTSAGKFRLKTIKENL-----DGFKIAEEDLRLRGPGNLFGLEQAG 631          
The following BLAST results are available for this feature:
BLAST of CX308522 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
RECG_STAAN3.691e-1730.12ATP-dependent DNA helicase recG OS=Staphylococcus ... [more]
RECG_STAAM3.691e-1730.12ATP-dependent DNA helicase recG OS=Staphylococcus ... [more]
RECG_SYNY34.820e-1729.52ATP-dependent DNA helicase recG OS=Synechocystis s... [more]
RECG_MYCLE8.222e-1730.51ATP-dependent DNA helicase recG OS=Mycobacterium l... [more]
RECG_BACSU8.222e-1729.52ATP-dependent DNA helicase recG OS=Bacillus subtil... [more]
RECG_STAEQ1.074e-1628.92ATP-dependent DNA helicase recG OS=Staphylococcus ... [more]
RECG_PASMU1.074e-1632.61ATP-dependent DNA helicase recG OS=Pasteurella mul... [more]
RECG_STAES1.832e-1628.92ATP-dependent DNA helicase recG OS=Staphylococcus ... [more]
RECG_HAEIN2.392e-1631.88ATP-dependent DNA helicase recG OS=Haemophilus inf... [more]
RECG_BORBU1.551e-1530.30ATP-dependent DNA helicase recG OS=Borrelia burgdo... [more]

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Properties
Property NameValue
Genbank descriptionC20010H07SK OF2 Citrus clementina cDNA clone C20010H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308522 ID=CX308522; Name=CX308522; organism=Citrus clementina; type=EST; length=491bp
GGTGGGCAGGTTTTTTATGTCTTGCCTCGCATAAAAGGACTCGAAGAACC
AATGGATTTTCTTCAACAAGCGTTTCCGGGTGTTGATATAGCTATTGCAC
ATGGGCAGCAATATTCCAGGCAGCTTGAGGAAACAATGGAGAAATTTGCA
CAAGGTGCTATCAAAATTCTTATATGCACAAACATAGTAGAAAGTGGGCT
TGACATTCAAAATGCAAATACCATCATAGTTCAGGACGTTCAACAATTTG
GGCTAGCACAGTTGTATCAGTTGCGTGGAAGGGTGGGCCGGGCTGATAAG
GAAGCTCATGCCTACTTATTTTATCCTGATAAGTCACTGCTTTCCGACCA
AGCGCTAGAAAGGCTTGCAGCTCTTGAAGAATGCCGTGAACTTGGCCAAG
GTTTCCAACTTGCGGAGAAAGACATGGGCATAAGACGCTTTGGCACCATA
TTCGGTGAGCAGCAGACAGGTGATGTTGGAAATGTTGGTGT
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