CX308539

Overview
NameCX308539
Unique NameCX308539
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length445
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: HBP1_CASGL (Hemoglobin-1 OS=Casuarina glauca PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 6.165e-25
Identity = 58/120 (48.33%), Postives = 78/120 (65.00%), Query Frame = 3
Query:   84 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            A TE+QEAL+ +SW V+K+N     L+ F  I E AP ++ +FSFL+DSN   E N KLK HA  +F   CESA +LR+ G      +TLK+LG++H K  + + HFEV K +LL TIKE
Sbjct:    2 ALTEKQEALLKQSWEVLKQNIPAHSLRLFALIIEAAPESKYVFSFLKDSNEIPENNPKLKAHAAVIFKTICESATELRQKGHAVWDNNTLKRLGSIHLKNKITDPHFEVMKGALLGTIKE 121          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB_CANLI (Leghemoglobin OS=Canavalia lineata PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.203e-20
Identity = 57/120 (47.50%), Postives = 75/120 (62.50%), Query Frame = 3
Query:   84 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            AF+E+QE+LV  SW   K+N       F+  I E AP+AQ +FSFL +   P   N KLK HA  VF MT +SAVQLR  G+V + + T   LG+VH + GV++ HF V K +LL+T KE
Sbjct:    3 AFSEKQESLVKSSWEAFKQNVPHHSAVFYTLILEKAPAAQNMFSFLSNGVDP--NNPKLKAHAEKVFKMTVDSAVQLRAKGEVVLADPT---LGSVHVQKGVLDPHFLVVKEALLKTFKE 117          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB2_MEDTR (Leghemoglobin 2 OS=Medicago truncatula GN=LB2 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.571e-20
Identity = 58/119 (48.74%), Postives = 80/119 (67.23%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            FTE+QEALV  SW + K+N G   L F+  I E AP+A+ +FSFL+D+   ++ + KL+ HA  VF M  +SAVQLR  G V + ++TL   GA+H + GVV+ HF V K +LL+TIKE
Sbjct:    3 FTEKQEALVNSSWELFKQNPGNSVL-FYTIILEKAPAAKGMFSFLKDT-AGVQDSPKLQSHAEKVFGMVRDSAVQLRATGGVVLGDATL---GAIHIQKGVVDPHFVVVKEALLKTIKE 116          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB3_PEA (Leghemoglobin Lb120-1 OS=Pisum sativum PE=2 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 2.052e-20
Identity = 57/119 (47.90%), Postives = 80/119 (67.23%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            FTE+QEALV  SW + K+N     + F+  I + AP+A+ +FSFL+DS   +  + KL+ HA  VF M  +SA+QLR +G+V V ++TL   GA+H + GVV+ HF V K +LLETIKE
Sbjct:    3 FTEKQEALVNSSWELFKQNPS-YSVLFYTIILKKAPAAKGMFSFLKDS-AEVVDSPKLQAHAEKVFGMVHDSAIQLRASGEVVVGDATL---GAIHIQKGVVDPHFVVVKEALLETIKE 116          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB2_LUPLU (Leghemoglobin-2 OS=Lupinus luteus PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 2.052e-20
Identity = 53/120 (44.17%), Postives = 76/120 (63.33%), Query Frame = 3
Query:   84 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            A TE Q ALV  SW     N  +   +FF+ + EIAP+A+ LFSFL+ ++   + N +L+ HA  VF +  E+A+QL+  G V V ++TLK LG+VH   GV + HF V K ++L+TIKE
Sbjct:    3 ALTESQAALVKSSWEEFNANIPKHTHRFFILVLEIAPAAKDLFSFLKGTSEVPQNNPELQAHAGKVFKLVYEAAIQLQVTG-VVVTDATLKNLGSVHVSKGVADAHFPVVKEAILKTIKE 121          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB6_PEA (Leghemoglobin Lb120-34 OS=Pisum sativum PE=2 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 4.572e-20
Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            FTE+QEALV  SW + K+N     + F+  I + AP+A+ +FSFL+DS   +  + KL+ HA  VF M  +SA+QLR +G+V + ++TL   GA+H + GVV+ HF V K +LLETIKE
Sbjct:    3 FTEKQEALVNSSWELFKQNPS-YSVLFYTIILKKAPAAKGMFSFLKDS-AEVVDSPKLQAHAEKVFGMVHDSAIQLRASGEVVLGDATL---GAIHIQKGVVDPHFVVVKEALLETIKE 116          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB3_MEDSA (Leghemoglobin-3 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 7.799e-20
Identity = 57/119 (47.90%), Postives = 78/119 (65.55%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            FT++QEALV  SW   K+N G   L F+  I E AP+A+ +FSFL+DS   ++ + KL+ HA  VF M  +SA QLR  G V + ++TL   GA+H + GVV+ HF V K +LL+TIKE
Sbjct:    3 FTDKQEALVNSSWESFKQNPGNSVL-FYTIILEKAPAAKGMFSFLKDS-AGVQDSPKLQSHAEKVFGMVRDSAAQLRATGGVVLGDATL---GAIHIQKGVVDPHFAVVKEALLKTIKE 116          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB5_PEA (Leghemoglobin Lb120-29 OS=Pisum sativum PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 1.019e-19
Identity = 56/119 (47.06%), Postives = 80/119 (67.23%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            FT++QEALV  SW + K+N G   + F+  I + AP+ + +FSFL+DS   +  + KL+ HA  VF M  +SAVQLR +G+V + ++TL   GA+H + GVV+ HF V K +LLETIKE
Sbjct:    3 FTDKQEALVNSSWELFKQNPG-YSVLFYNIILKKAPATKGMFSFLKDS-AGVVDSPKLQAHAEKVFGMVHDSAVQLRVSGEVVLGDATL---GAIHIQKGVVDSHFVVVKEALLETIKE 116          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB4_MEDSA (Leghemoglobin OS=Medicago sativa GN=LB3 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.019e-19
Identity = 54/119 (45.38%), Postives = 78/119 (65.55%), Query Frame = 3
Query:   87 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            FT +QEALV  SW   K+N     + F+  I E AP+A+ +FSFL+DS   ++ + +L+ HA  VF M  +SAVQLR  G+V + ++T   LG++H + GVV+ HF V K +LL+TIKE
Sbjct:    3 FTADQEALVNSSWESFKQNLPGYSVFFYTTILEKAPAAKGMFSFLKDS-AGVQDSPQLQAHAEKVFGMVRDSAVQLRATGEVVLGDAT---LGSIHIQKGVVDPHFVVVKEALLKTIKE 117          
BLAST of CX308539 vs. ExPASy Swiss-Prot
Match: LGB1_MEDSA (Leghemoglobin-1 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.330e-19
Identity = 53/120 (44.17%), Postives = 79/120 (65.83%), Query Frame = 3
Query:   84 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSAQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKE 443
            +FT++QEALV  SW   K+N     + F+  + E AP+A+ LFSFL++S   ++ + +L+ HA  VF +  +SAVQLR  G V + ++T   LGA+H + GVV+ HF V K +LL+TIKE
Sbjct:    2 SFTDKQEALVNSSWEAFKQNLPRYSVFFYTVVLEKAPAAKGLFSFLKNS-AEVQDSPQLQAHAEKVFGLVRDSAVQLRATGGVVLGDAT---LGAIHVRKGVVDPHFVVVKEALLKTIKE 117          
The following BLAST results are available for this feature:
BLAST of CX308539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
HBP1_CASGL6.165e-2548.33Hemoglobin-1 OS=Casuarina glauca PE=1 SV=2[more]
LGB_CANLI1.203e-2047.50Leghemoglobin OS=Canavalia lineata PE=2 SV=1[more]
LGB2_MEDTR1.571e-2048.74Leghemoglobin 2 OS=Medicago truncatula GN=LB2 PE=2... [more]
LGB3_PEA2.052e-2047.90Leghemoglobin Lb120-1 OS=Pisum sativum PE=2 SV=3[more]
LGB2_LUPLU2.052e-2044.17Leghemoglobin-2 OS=Lupinus luteus PE=1 SV=2[more]
LGB6_PEA4.572e-2047.06Leghemoglobin Lb120-34 OS=Pisum sativum PE=2 SV=3[more]
LGB3_MEDSA7.799e-2047.90Leghemoglobin-3 OS=Medicago sativa PE=2 SV=1[more]
LGB5_PEA1.019e-1947.06Leghemoglobin Lb120-29 OS=Pisum sativum PE=2 SV=3[more]
LGB4_MEDSA1.019e-1945.38Leghemoglobin OS=Medicago sativa GN=LB3 PE=2 SV=1[more]
LGB1_MEDSA1.330e-1944.17Leghemoglobin-1 OS=Medicago sativa PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC21001B02Rv AbsLeaSub1 Citrus clementina cDNA clone C21001B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308539 ID=CX308539; Name=CX308539; organism=Citrus clementina; type=EST; length=445bp
ACGGGATTCAACAACATTTTGTGTATCACATTCAATCCTCAGGTGTCCAA
AAGAAATCAATGGCCAACATTAACGAAGGTAGAGCCTTTACTGAAGAGCA
AGAAGCTTTAGTTGTCAAGTCATGGAATGTAATGAAGAAGAATGCTGGAG
AATTGGGTCTTAAATTCTTCTTGAGGATCTTTGAGATTGCACCATCAGCC
CAAAAGCTGTTCTCATTCTTGAGAGACTCAAATGTGCCTCTAGAGCAGAA
CCAGAAGCTCAAGCCCCACGCCATGTCTGTTTTTGTTATGACGTGTGAAT
CAGCAGTGCAACTGAGGAAAGCAGGCAAAGTGACAGTAAGAGAATCAACT
CTAAAAAAATTAGGAGCTGTCCACTTCAAATATGGTGTTGTTAATGAGCA
TTTTGAGGTCACAAAATTTTCACTACTGGAAACCATAAAAGAGGC
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