CX308554

Overview
NameCX308554
Unique NameCX308554
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308554 vs. ExPASy Swiss-Prot
Match: WRK36_ARATH (Probable WRKY transcription factor 36 OS=Arabidopsis thaliana GN=WRKY36 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.285e-12
Identity = 49/112 (43.75%), Postives = 64/112 (57.14%), Query Frame = 1
Query:    1 GQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDK-SFLVATYEGEHNHDV------------QCSSLGQSSSLTNYCSPKSSI-----VHCPDYQTTDSFGSDVTLDLT 282
            GQK  K NP PRAY+RCSM SS CPV+K+VQRC E++ S  + TYEG H+H +              +SL QS S ++  S  +S+      H     TT+S  + VTLDLT
Sbjct:  212 GQKTAKTNPLPRAYYRCSM-SSNCPVRKQVQRCGEEETSAFMTTYEGNHDHPLPMEASHMAAGTSAAASLLQSGSSSSSSSTSASLSYFFPFHHFSISTTNSHPT-VTLDLT 321          
BLAST of CX308554 vs. ExPASy Swiss-Prot
Match: WRK74_ARATH (Probable WRKY transcription factor 74 OS=Arabidopsis thaliana GN=WRKY74 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.628e-11
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1
Query:    1 GQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSS 168
            GQK  K +P PR Y++CS    GCP +K V+RC+E+ S L+ TYEGEHNH    SS
Sbjct:  271 GQKPIKGSPHPRGYYKCSSVR-GCPARKHVERCVEETSMLIVTYEGEHNHSRILSS 325          
BLAST of CX308554 vs. ExPASy Swiss-Prot
Match: WRK33_ARATH (Probable WRKY transcription factor 33 OS=Arabidopsis thaliana GN=WRKY33 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.628e-11
Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 1
Query:    1 GQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIV 222
            GQKV K NP+PR+Y++C+  + GCPV+K V+R   D   ++ TYEG+HNHDV  +    S   TN     SS V
Sbjct:  371 GQKVVKGNPNPRSYYKCT--TIGCPVRKHVERASHDMRAVITTYEGKHNHDVPAAR--GSGYATNRAPQDSSSV 440          
BLAST of CX308554 vs. ExPASy Swiss-Prot
Match: WRKY1_MAIZE (Protein WRKY1 OS=Zea mays PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.601e-11
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1
Query:    1 GQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHD 153
            GQK  K +P PR Y++CS    GCP +K V+RC++D S L+ TYEG+HNH+
Sbjct:  341 GQKPIKGSPHPRGYYKCSSVR-GCPARKHVERCVDDPSMLIVTYEGDHNHN 390          
BLAST of CX308554 vs. ExPASy Swiss-Prot
Match: WRK20_ARATH (Probable WRKY transcription factor 20 OS=Arabidopsis thaliana GN=WRKY20 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.601e-11
Identity = 37/110 (33.64%), Postives = 61/110 (55.45%), Query Frame = 1
Query:    1 GQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQETRPPRNSMQ 330
            GQKV + NP+PR+Y++C+  + GCPV+K V+R   D   ++ TYEG+H+HDV  S     SS  +   P+      PD   TD+   ++ + ++  G N  +   ++  Q
Sbjct:  390 GQKVVRGNPNPRSYYKCT--AHGCPVRKHVERASHDPKAVITTYEGKHDHDVPTS----KSSSNHEIQPRFR----PD--ETDTISLNLGVGISSDGPNHASNEHQHQNQ 487          
The following BLAST results are available for this feature:
BLAST of CX308554 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
WRK36_ARATH2.285e-1243.75Probable WRKY transcription factor 36 OS=Arabidops... [more]
WRK74_ARATH5.628e-1153.57Probable WRKY transcription factor 74 OS=Arabidops... [more]
WRK33_ARATH5.628e-1145.95Probable WRKY transcription factor 33 OS=Arabidops... [more]
WRKY1_MAIZE9.601e-1152.94Protein WRKY1 OS=Zea mays PE=1 SV=1[more]
WRK20_ARATH9.601e-1133.64Probable WRKY transcription factor 20 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC21001C05Rv AbsLeaSub1 Citrus clementina cDNA clone C21001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308554 ID=CX308554; Name=CX308554; organism=Citrus clementina; type=EST; length=650bp
GGCCAAAAGGTTACTAAAGATAATCCCTCACCTCGGGCTTATTTCAGATG
TTCAATGGCTTCTTCTGGATGTCCTGTAAAAAAAAAGGTTCAAAGATGCA
TGGAGGACAAGTCATTTCTCGTTGCAACTTATGAAGGAGAACACAACCAT
GATGTTCAATGTAGCTCACTTGGGCAATCCTCCTCTTTAACAAATTATTG
CTCACCCAAAAGCTCAATTGTACATTGCCCAGATTATCAAACAACTGATT
CTTTTGGATCAGATGTCACACTTGATCTTACTCTATCTGGGTCCAATCAA
GAAACTAGACCCCCTAGAAACTCGATGCAAGTCTGTGACGATAAAAAGAA
GATTGAAGAATATGTGGCATCCTTAACTAAAGATCCCAGCTTCACCATAG
CTGTAGCCGATGCTGTTGCAAGTTCCATCAATGGCCCCCCACATAGACCA
ATGTGAACATTTGGGGACTGATACATGGATTCTGTATCTTATTCGTAACT
TAAGAATATGTGGCATCCTTAACTAAAGATCCCAGCTTCACCATAGTTTT
AGCCGATGCTGTTGCAAGTTCCATCAATGGCCCACATAGACCAATGTGAA
CATTTGGGGACTGATACATGGATTCTGTATCTTATTCGTAATTAAGGGAG
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