CX308591

Overview
NameCX308591
Unique NameCX308591
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length480
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12981 contig Ccv1_Contig12981:387..866. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308591 vs. ExPASy Swiss-Prot
Match: PLCD_BOVIN (1-acyl-sn-glycerol-3-phosphate acyltransferase delta OS=Bos taurus GN=AGPAT4 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 7.525e-28
Identity = 56/138 (40.58%), Postives = 86/138 (62.32%), Query Frame = -3
Query:    2 AGVKIKLFVDREAYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLLAAQEYAASTGLPIPRNVLIP 415
            +G +  ++ D  AY   GKE+A+VV NHK +ID+L GW LA+R G LG +  + KK   ++P+IGW  +F+E +F  R W +D  T+   L  LRDYP+ ++  +  EGTRFT+ K   + + A + GLP  ++ L+P
Sbjct:   69 SGTECVIYTDPRAYPKYGKENAIVVLNHKFEIDFLCGWSLAERFGVLGGSKVLAKKELAYVPIIGWMWYFTEMVFCTRKWEQDRKTVSESLLHLRDYPEKYFFLIHCEGTRFTEKKHQISMQVAQAKGLPSLKHHLLP 206          
BLAST of CX308591 vs. ExPASy Swiss-Prot
Match: PLCC_MOUSE (1-acyl-sn-glycerol-3-phosphate acyltransferase gamma OS=Mus musculus GN=Agpat3 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 7.525e-28
Identity = 57/132 (43.18%), Postives = 82/132 (62.12%), Query Frame = -3
Query:    2 LFVDREAYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLLAAQEYAASTGLPIPRNVLIP 397
            LF D+      GKEH +V+ NH  +ID+L GW + +R G LGS+  + K+    +P+IGW+ +F E +F +R W +D  T+  GL+RL DYP+  W  L+ EGTRFT+ K   + E AAS GLP  +  L+P
Sbjct:   75 LFTDQATVDHFGKEHVVVILNHNFEIDFLCGWTMCERFGVLGSSKVLAKRELLCVPLIGWTWYFLEIVFCKRKWEEDRDTVIEGLRRLADYPEYMWFLLYCEGTRFTETKHRISMEVAASKGLPPLKYHLLP 206          
BLAST of CX308591 vs. ExPASy Swiss-Prot
Match: PLCD_RAT (1-acyl-sn-glycerol-3-phosphate acyltransferase delta OS=Rattus norvegicus GN=Agpat4 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.421e-26
Identity = 55/138 (39.86%), Postives = 85/138 (61.59%), Query Frame = -3
Query:    2 AGVKIKLFVDREAYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLLAAQEYAASTGLPIPRNVLIP 415
            +G +  ++ D +A    GKE+A+VV NHK +ID+L GW LA+R G LG++  + KK   ++P+IGW  +F E +F  R W +D  T+   L  LRDYP+ +   +  EGTRFT+ K   + + A + GLP  ++ L+P
Sbjct:   69 SGTECTIYTDPKASPHYGKENAIVVLNHKFEIDFLCGWSLAERLGILGNSKVLAKKELAYVPIIGWMWYFVEMIFCTRKWEQDRQTVAKSLLHLRDYPEKYLFLIHCEGTRFTEKKHQISMQVAQAKGLPSLKHHLLP 206          
BLAST of CX308591 vs. ExPASy Swiss-Prot
Match: PLCD_MOUSE (1-acyl-sn-glycerol-3-phosphate acyltransferase delta OS=Mus musculus GN=Agpat4 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.421e-26
Identity = 55/138 (39.86%), Postives = 85/138 (61.59%), Query Frame = -3
Query:    2 AGVKIKLFVDREAYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLLAAQEYAASTGLPIPRNVLIP 415
            +G +  ++ D +A    GKE+A+VV NHK +ID+L GW LA+R G LG++  + KK   ++P+IGW  +F E +F  R W +D  T+   L  LRDYP+ +   +  EGTRFT+ K   + + A + GLP  ++ L+P
Sbjct:   69 SGTECTIYTDPKACPHYGKENAIVVLNHKFEIDFLCGWSLAERLGILGNSKVLAKKELAYVPIIGWMWYFVEMIFCTRKWEQDRQTVAKSLLHLRDYPEKYLFLIHCEGTRFTEKKHQISMQVAQAKGLPSLKHHLLP 206          
BLAST of CX308591 vs. ExPASy Swiss-Prot
Match: LPAT5_ARATH (Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 OS=Arabidopsis thaliana GN=LPAT5 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.243e-22
Identity = 47/120 (39.17%), Postives = 76/120 (63.33%), Query Frame = -3
Query:    2 KEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLLAAQEYAASTGLPIPRNVLIP 361
            ++  L+++NH++++DW+  W LA R G +G+   V+K S   LP+ GW+    E++ +ER W  DE+ L+  +   +D     WLALF EGT +T+AK   ++++AA  GLPI  NVL+P
Sbjct:   91 EDRVLLIANHRTEVDWMYFWDLALRKGQIGNIKYVLKSSLMKLPLFGWAFHLFEFIPVERRWEVDEANLRQIVSSFKDPRDALWLALFPEGTDYTEAKCQRSKKFAAENGLPILNNVLLP 210          
BLAST of CX308591 vs. ExPASy Swiss-Prot
Match: LPAT4_ARATH (Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 OS=Arabidopsis thaliana GN=LPAT4 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.121e-22
Identity = 49/120 (40.83%), Postives = 72/120 (60.00%), Query Frame = -3
Query:    2 KEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLLAAQEYAASTGLPIPRNVLIP 361
            ++  L+++NH++++DW+  W +A R GCLG    V+K S   LP+ GW     E++ +ER    DE  L   L   +D  +P WLALF EGT FT+ K   +Q++AA  GLP   NVL+P
Sbjct:   96 EKRVLLIANHRTEVDWMYLWNIALRKGCLGYIKYVLKSSLMKLPIFGWGFHVLEFIPVERKREVDEPVLLQMLSSFKDPQEPLWLALFPEGTDFTEEKCKRSQKFAAEVGLPALSNVLLP 215          
BLAST of CX308591 vs. ExPASy Swiss-Prot
Match: YHOE_SCHPO (Uncharacterized acyltransferase C428.14 OS=Schizosaccharomyces pombe GN=SPBC428.14 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.511e-15
Identity = 40/132 (30.30%), Postives = 70/132 (53.03%), Query Frame = -3
Query:    2 FVDREA-YRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLLAAQEYAASTGLPIPRNVLIP 394
            ++DR      +  E  +V++NH+   DW+  W L+  +   G    ++K S K+LPVIGW M    ++FL R W KD  T+    + +R+      L LF EGT   ++    ++ YA   G+ +P+++++P
Sbjct:   81 YLDRNGCLETIAAERNIVIANHQLYSDWMYVWWLSYTAKQHGHVYIMLKNSLKWLPVIGWGMQLFRFIFLSRKWDKDYETMSRHFKFIRNVRDSVSLILFPEGTNLVESTYQRSRVYADKIGVKMPKHLMLP 212          
BLAST of CX308591 vs. ExPASy Swiss-Prot
Match: PLCE_HUMAN (1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon OS=Homo sapiens GN=AGPAT5 PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 2.126e-14
Identity = 49/142 (34.51%), Postives = 85/142 (59.86%), Query Frame = -3
Query:    2 GVKIKLFVDREAYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEY--LFLERNWAKDESTLKSGLQRLRDYPQPFWLALFVEGTRFT--QAKLL-AAQEYAASTGLPIPRNVLIP 412
            GV+I L+ D        KE+ + ++NH+S +DW+V  +LA R   LG    V+K+  K+LP+ G   +F+++  ++++R+   +E  +++ LQ   D   P +L +F EGTR+   Q K+L A+Q +AA  GL + ++VL P
Sbjct:   71 GVQILLYGDLPK----NKENIIYLANHQSTVDWIVADILAIRQNALGHVRYVLKEGLKWLPLYG--CYFAQHGGIYVKRSAKFNEKEMRNKLQSYVDAGTPMYLVIFPEGTRYNPEQTKVLSASQAFAAQRGLAVLKHVLTP 206          
BLAST of CX308591 vs. ExPASy Swiss-Prot
Match: PLCE_MOUSE (1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon OS=Mus musculus GN=Agpat5 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 4.735e-14
Identity = 49/142 (34.51%), Postives = 85/142 (59.86%), Query Frame = -3
Query:    2 GVKIKLFVDREAYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEY--LFLERNWAKDESTLKSGLQRLRDYPQPFWLALFVEGTRF--TQAKLL-AAQEYAASTGLPIPRNVLIP 412
            GV+I L+ D        KE+ + ++NH+S +DW+V  +LA R   LG    V+K   K+LP+ G+  +F+++  ++++R+   ++  ++S LQ   +   P +L +F EGTR+  T  KLL A+Q +AA  GL + ++VL P
Sbjct:   71 GVQILLYGDLPK----NKENVIYLANHQSTVDWIVADMLAARQDALGHVRYVLKDKLKWLPLYGF--YFAQHGGIYVKRSAKFNDKEMRSKLQSYVNAGTPMYLVIFPEGTRYNATYTKLLSASQAFAAQRGLAVLKHVLTP 206          
BLAST of CX308591 vs. ExPASy Swiss-Prot
Match: LCLT1_DANRE (Lysocardiolipin acyltransferase 1 OS=Danio rerio GN=lclat1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.789e-12
Identity = 35/119 (29.41%), Postives = 59/119 (49.58%), Query Frame = -3
Query:    2 EHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLLAAQEYAASTGLPIPRNVLIP 358
            E ++++ NH++ +DW+  W    R   L      +K + K +P  GW+M  + ++F++R W  D + + + LQ      +P  L LF EGT  T+     + E+A   GL     VL P
Sbjct:   77 ERSVIIMNHRTRLDWMFLWCCLLRYSYLRQEKICLKAALKSVPGFGWAMQVASFIFIQRRWEDDRTHMSNMLQYFCRIREPVQLLLFPEGTDLTENTRARSDEFAEKNGLQKYEYVLHP 195          
The following BLAST results are available for this feature:
BLAST of CX308591 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
PLCD_BOVIN7.525e-2840.581-acyl-sn-glycerol-3-phosphate acyltransferase del... [more]
PLCC_MOUSE7.525e-2843.181-acyl-sn-glycerol-3-phosphate acyltransferase gam... [more]
PLCD_RAT2.421e-2639.861-acyl-sn-glycerol-3-phosphate acyltransferase del... [more]
PLCD_MOUSE2.421e-2639.861-acyl-sn-glycerol-3-phosphate acyltransferase del... [more]
LPAT5_ARATH1.243e-2239.17Probable 1-acyl-sn-glycerol-3-phosphate acyltransf... [more]
LPAT4_ARATH2.121e-2240.83Probable 1-acyl-sn-glycerol-3-phosphate acyltransf... [more]
YHOE_SCHPO2.511e-1530.30Uncharacterized acyltransferase C428.14 OS=Schizos... [more]
PLCE_HUMAN2.126e-1434.511-acyl-sn-glycerol-3-phosphate acyltransferase eps... [more]
PLCE_MOUSE4.735e-1434.511-acyl-sn-glycerol-3-phosphate acyltransferase eps... [more]
LCLT1_DANRE5.789e-1229.41Lysocardiolipin acyltransferase 1 OS=Danio rerio G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21001F06Rv AbsLeaSub1 Citrus clementina cDNA clone C21001F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308591 ID=CX308591; Name=CX308591; organism=Citrus clementina; type=EST; length=480bp
AAGGAATTAAAACATTTCTAGGAATAGGCAATCCTGTTGAAGCAGCATAT
TCCTGAGCTGCTAAAAGCTTAGCCTGTGTAAATCGAGTTCCTTCTACAAA
GAGAGCTAACCAAAAGGGTTGAGGATAGTCTCTTAGACGTTGGAGACCTG
ACTTTAATGTGCTCTCATCCTTTGCCCAGTTTCTTTCCAGAAAGAGATAT
TCAGAAAACCACATTGACCAACCTATGACCGGAAGAAATTTTGATGATTT
CTTCATAACGGCCAATGTGCTACCAAGACAACCTGACCGCTGAGCCAAAA
CCCACCCAACAAGCCAGTCAATGTCACTTTTGTGATTGGAAACAACAAGT
GCATGTTCTTTACCCATTAATCGATACGCTTCACGGTCTACGAAAAGTTT
GATCTTAACTCCGGCCCACCAATCAACTATCCATACAAGTTCCAGCCATA
ACAATTCCGCTACCCATCTATTGATTCTCC
back to top