CX308599

Overview
NameCX308599
Unique NameCX308599
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length351
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.604e-16
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = -3
Query:   20 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 349
            LK   + T  PT+    E +    + FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EAR EL  +L+ +EL     L+  NK D P A++  E+   +GL+
Sbjct:   40 LKNDRLATLQPTLHPTSEELAIGQVKFTTYDLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEELSSVPFLILGNKIDAPGAVSEEELRQAIGLY 149          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL17_HUMAN (ADP-ribosylation factor-like protein 17 OS=Homo sapiens GN=ARL17 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 6.013e-16
Identity = 36/51 (70.59%), Postives = 42/51 (82.35%), Query Frame = -3
Query:  197 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG 349
            LKLGE V  +PT+GF VETVEYKN +F VWDVG   KIRPLW+H+FQNT+G
Sbjct:   37 LKLGETVPAVPTVGFCVETVEYKNNTFAVWDVGSHFKIRPLWQHFFQNTKG 87          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: AR13B_DANRE (ADP-ribosylation factor-like protein 13B OS=Danio rerio GN=arl13b PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.854e-16
Identity = 39/102 (38.24%), Postives = 61/102 (59.80%), Query Frame = -3
Query:   14 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 319
            PT+GF+   ++      T++D+GG  +IR +W++Y+  + G++FVVDS+D  RI E RD +  +L    +    +LV ANKQD   AM  A+I + L L  L
Sbjct:   51 PTVGFSKVDLKQGKFEVTIFDLGGGKRIRGIWKNYYSESYGVVFVVDSSDVQRIQETRDTMAEVLRHPRIAGKPVLVLANKQDQDGAMAEADIIETLSLEKL 152          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: AR13B_HUMAN (ADP-ribosylation factor-like protein 13B OS=Homo sapiens GN=ARL13B PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.026e-15
Identity = 37/106 (34.91%), Postives = 62/106 (58.49%), Query Frame = -3
Query:    2 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 319
            PT+GF+   +       T++D+GG  +IR +W++Y+  + G+IFVVDS+D +R+ E ++ +  ML    +    +LV ANKQD   A+  A++ + L L  L   H
Sbjct:   51 PTVGFSKINLRQGKFEVTIFDLGGGIRIRGIWKNYYAESYGVIFVVDSSDEERMEETKEAMSEMLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEH 156          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1_MAGGR (Small COPII coat GTPase SAR1 OS=Magnaporthe grisea GN=SAR1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.340e-15
Identity = 39/110 (35.45%), Postives = 62/110 (56.36%), Query Frame = -3
Query:   20 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 349
            LK   +    PT+    E +   N+ FT +D+GG  + R LW+ YF    G++F+VD+ D DR  EA+ EL  +L+ +EL     ++  NK D P A++  E+  +LGL+
Sbjct:   40 LKNDRVAILQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHDRFPEAKAELDALLSMEELAKVPFVILGNKIDHPEAISEEELRHQLGLY 149          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1_NEUCR (Small COPII coat GTPase sar-1 OS=Neurospora crassa GN=sar-1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.285e-15
Identity = 38/109 (34.86%), Postives = 62/109 (56.88%), Query Frame = -3
Query:   23 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 349
            LK   +    PT+    E +   N+ FT +D+GG  + R LW+ YF    G++F+VD+ D +R+ EA+ E+  +L+ +EL     +V  NK D P A++  E+  +LGL
Sbjct:   40 LKNDRVAILQPTLHPTSEELSVGNVKFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHERLPEAKAEIDALLSMEELAKVPFVVLGNKIDHPEAVSEDELRQRLGL 148          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: AR13B_MOUSE (ADP-ribosylation factor-like protein 13B OS=Mus musculus GN=Arl13b PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.285e-15
Identity = 36/106 (33.96%), Postives = 62/106 (58.49%), Query Frame = -3
Query:    2 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 319
            PT+GF+   +       T++D+GG  +IR +W++Y+  + G+IFVVDS+D +R+ E ++ +  +L    +    +LV ANKQD   A+  A++ + L L  L   H
Sbjct:   51 PTVGFSKIDLRQGKFQVTIFDLGGGKRIRGIWKNYYAESYGVIFVVDSSDEERMEETKETMSEVLRHPRISGKPILVLANKQDKEGALGEADVIECLSLEKLVNEH 156          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1_CHAGB (Small COPII coat GTPase SAR1 OS=Chaetomium globosum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.091e-15
Identity = 38/110 (34.55%), Postives = 63/110 (57.27%), Query Frame = -3
Query:   20 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 349
            LK   +    PT+    E +   N+ FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EA+ EL  +L+ +EL     +V  NK D P+A++  E+  +LG++
Sbjct:   40 LKNDRVAILQPTLHPTSEELSIGNVRFTTFDLGGHQQARRLWKDYFPEVNGVVFLVDAKDHERFPEAKAELDALLSMEELSKVPFVVLGNKIDHPDAVSEDELRHQLGMY 149          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1_PHANO (Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodorum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.683e-15
Identity = 37/110 (33.64%), Postives = 63/110 (57.27%), Query Frame = -3
Query:   20 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 349
            LK   +    PT+    E +   N+ FT +D+GG  + R LWR YF    G++F+VD+ D +R+ E++ EL  +L  +EL++   ++  NK D P A++  ++   LGL+
Sbjct:   36 LKNDRVAVLQPTLHPTSEELSIGNVKFTTFDLGGHAQARRLWRDYFPEVSGIVFLVDAKDHERLNESKAELDALLAMEELKNTPFVILGNKIDHPEAVSEDQLRATLGLY 145          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1_TRIRE (Small COPII coat GTPase sar1 OS=Trichoderma reesei GN=sar1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.134e-14
Identity = 37/110 (33.64%), Postives = 63/110 (57.27%), Query Frame = -3
Query:   20 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 349
            LK   +    PT+    E +   N+ F  +D+GG  + R +WR YF +  G++F+VD+ D +R  EA+ EL  +L+ +EL     ++  NK D P+A++  E+  +LGL+
Sbjct:   40 LKNDRVAILQPTLHPTSEELAIGNVRFNTFDLGGHQQARRIWRDYFPDVNGVVFLVDAKDHERFPEAKAELDALLSMEELSKVPFVILGNKIDHPDAVSEDELRHQLGLY 149          
The following BLAST results are available for this feature:
BLAST of CX308599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
SAR1_USTMA4.604e-1635.45Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]
ARL17_HUMAN6.013e-1670.59ADP-ribosylation factor-like protein 17 OS=Homo sa... [more]
AR13B_DANRE7.854e-1638.24ADP-ribosylation factor-like protein 13B OS=Danio ... [more]
AR13B_HUMAN1.026e-1534.91ADP-ribosylation factor-like protein 13B OS=Homo s... [more]
SAR1_MAGGR1.340e-1535.45Small COPII coat GTPase SAR1 OS=Magnaporthe grisea... [more]
SAR1_NEUCR2.285e-1534.86Small COPII coat GTPase sar-1 OS=Neurospora crassa... [more]
AR13B_MOUSE2.285e-1533.96ADP-ribosylation factor-like protein 13B OS=Mus mu... [more]
SAR1_CHAGB5.091e-1534.55Small COPII coat GTPase SAR1 OS=Chaetomium globosu... [more]
SAR1_PHANO8.683e-1533.64Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodo... [more]
SAR1_TRIRE1.134e-1433.64Small COPII coat GTPase sar1 OS=Trichoderma reesei... [more]

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Properties
Property NameValue
Genbank descriptionC21001G02Rv AbsLeaSub1 Citrus clementina cDNA clone C21001G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308599 ID=CX308599; Name=CX308599; organism=Citrus clementina; type=EST; length=351bp
AGTGGCGCTGCCTGAGGGAGTGGAGGCCAAGCTTATCAGTAATCTCAGCA
GCATTCATTGCATTTGGAAGATCCTGTTTGTTAGCAAATACAAGCAACAC
TGCATCTCGCAGCTCATCCTCATTCAACATCCTATGCAATTCATCCCTTG
CTTCTACAATACGGTCTCTGTCATTGCTGTCCACAACAAAAATGAGACCT
TGAGTGTTCTGGAAATAATGCCTCCACAAGGGACGAATCTTGTCCTGGCC
ACCAACATCCCACACAGTGAAACTGATGTTTTTATATTCAACGGTCTCCA
CATTAAACCCAATGGTAGGAATTGTGGTGACAATCTCTCCAAGCTTGAGC
T
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