CX308599

Overview
NameCX308599
Unique NameCX308599
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length351
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14605 contig Ccv1_Contig14605:197..547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL8A_HUMAN (ADP-ribosylation factor-like protein 8A OS=Homo sapiens GN=ARL8A PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.864e-20
Identity = 36/106 (33.96%), Postives = 72/106 (67.92%), Query Frame = -3
Query:    5 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 322
            IPT+GFN+  +   N++  +WD+GGQ + R +W  Y +    ++++VD+ D+++I  +++ELH +L++ +L+   +LV  NK+DLP A++  E+ +K+ L +++ R
Sbjct:   50 IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDR 155          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL8A_CHICK (ADP-ribosylation factor-like protein 8A OS=Gallus gallus GN=ARL8A PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.864e-20
Identity = 36/106 (33.96%), Postives = 72/106 (67.92%), Query Frame = -3
Query:    5 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 322
            IPT+GFN+  +   N++  +WD+GGQ + R +W  Y +    ++++VD+ D+++I  +++ELH +L++ +L+   +LV  NK+DLP A++  E+ +K+ L +++ R
Sbjct:   50 IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDR 155          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL_SCHPO (ADP-ribosylation factor-like protein alp41 OS=Schizosaccharomyces pombe GN=alp41 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.965e-20
Identity = 42/106 (39.62%), Postives = 69/106 (65.09%), Query Frame = -3
Query:    2 PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRH 319
            PT GF + T+E + + FT+WD+GGQ  +R  W++YF++T+ +I+VVDS D  R+ E R+ L  +L E++L    +LV ANK D+  A+++ EI+  L +   +  H
Sbjct:   46 PTFGFQIRTLEVEGLRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSGALSSEEISKILNISKYKSSH 151          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL5C_HUMAN (Putative ADP-ribosylation factor-like protein 5C OS=Homo sapiens GN=ARL5C PE=2 SV=4)

HSP 1 Score: 95.5153 bits (236), Expect = 8.965e-20
Identity = 44/109 (40.37%), Postives = 71/109 (65.14%), Query Frame = -3
Query:   11 EIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLR 337
            E+V   PTIG NVE +      F +WD+   + +  +W  Y+ NT+ +I V+DS DRDR++  R+EL++ML  + L+DA +L+FANKQD+ ++M   EI+  L L +++
Sbjct:   40 EVVHMCPTIGSNVEEIILPKTHFFMWDIVRPEALSFIWNTYYSNTEFIILVIDSTDRDRLLTTREELYKMLAHEALQDASVLIFANKQDVKDSMRMVEISHFLTLSTIK 148          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL8A_XENTR (ADP-ribosylation factor-like protein 8A OS=Xenopus tropicalis GN=arl8a PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.171e-19
Identity = 35/106 (33.02%), Postives = 72/106 (67.92%), Query Frame = -3
Query:    5 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 322
            IPT+GFN+  +   N++  +WD+GGQ + R +W  Y +    ++++VD+ D+D+I  +++ELH +L++ +L+   +LV  NK+D+P A++  E+ +++ L +++ R
Sbjct:   50 IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQDKIEASKNELHNLLDKAQLQGIPVLVLGNKRDIPGALDEKELIERMNLSAIQDR 155          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL6_PONAB (ADP-ribosylation factor-like protein 6 OS=Pongo abelii GN=ARL6 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.171e-19
Identity = 44/108 (40.74%), Postives = 75/108 (69.44%), Query Frame = -3
Query:    5 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 322
            +PTIGF++E  +  ++SFTV+D+ GQ + R LW HY++  Q +IFV+DS+DR R+V A++EL  +LN  ++  R   +L FANK DL +A+ + +++  L L +++ +
Sbjct:   48 LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDK 155          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL6_HUMAN (ADP-ribosylation factor-like protein 6 OS=Homo sapiens GN=ARL6 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.171e-19
Identity = 44/108 (40.74%), Postives = 75/108 (69.44%), Query Frame = -3
Query:    5 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 322
            +PTIGF++E  +  ++SFTV+D+ GQ + R LW HY++  Q +IFV+DS+DR R+V A++EL  +LN  ++  R   +L FANK DL +A+ + +++  L L +++ +
Sbjct:   48 LPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDK 155          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL6_MOUSE (ADP-ribosylation factor-like protein 6 OS=Mus musculus GN=Arl6 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.529e-19
Identity = 43/108 (39.81%), Postives = 76/108 (70.37%), Query Frame = -3
Query:    5 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDEL--RDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 322
            +PTIGF++E  +  ++SFTV+D+ GQ + R LW HY+++ Q +IFV+DS+D+ R+V A++EL  +LN  ++  R   +L FANK DL +++ + +++  L L S++ +
Sbjct:   48 VPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKDGQAIIFVIDSSDKLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDSVTSVKVSQLLCLESIKDK 155          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL8_DROME (ADP-ribosylation factor-like protein 8 OS=Drosophila melanogaster GN=Gie PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.997e-19
Identity = 37/106 (34.91%), Postives = 69/106 (65.09%), Query Frame = -3
Query:    5 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQR 322
            IPT+GFN+  +   N++  VWD+GGQ + R +W  Y +    ++++VD+ D D++  +R+ELH +L++ +L    +LV  NK+DLP A++   + +++ L S++ R
Sbjct:   50 IPTVGFNMRKITRGNVTIKVWDIGGQPRFRSMWERYCRGVNAIVYMVDAADLDKLEASRNELHSLLDKPQLAGIPVLVLGNKRDLPGALDETGLIERMNLSSIQDR 155          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARL8_DICDI (ADP-ribosylation factor-like protein 8 OS=Dictyostelium discoideum GN=arl8 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.997e-19
Identity = 43/109 (39.45%), Postives = 65/109 (59.63%), Query Frame = -3
Query:   14 GEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL 340
            G I  TIPTIGFN++ V   N++  +WD+GGQ + R +W  Y +    ++FVVDS DR++  +++  L  ++N+  L    LLV ANK DLPN+    E+   L L  +
Sbjct:   43 GFIEDTIPTIGFNMKKVTKGNVTIKLWDIGGQPRFRSMWERYCRGVNAIVFVVDSADREKFEQSKQALQDLINKPPLAKIPLLVVANKNDLPNSAGVDEMIQNLDLRGI 151          
The following BLAST results are available for this feature:
BLAST of CX308599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
ARL8A_HUMAN6.864e-2033.96ADP-ribosylation factor-like protein 8A OS=Homo sa... [more]
ARL8A_CHICK6.864e-2033.96ADP-ribosylation factor-like protein 8A OS=Gallus ... [more]
ARL_SCHPO8.965e-2039.62ADP-ribosylation factor-like protein alp41 OS=Schi... [more]
ARL5C_HUMAN8.965e-2040.37Putative ADP-ribosylation factor-like protein 5C O... [more]
ARL8A_XENTR1.171e-1933.02ADP-ribosylation factor-like protein 8A OS=Xenopus... [more]
ARL6_PONAB1.171e-1940.74ADP-ribosylation factor-like protein 6 OS=Pongo ab... [more]
ARL6_HUMAN1.171e-1940.74ADP-ribosylation factor-like protein 6 OS=Homo sap... [more]
ARL6_MOUSE1.529e-1939.81ADP-ribosylation factor-like protein 6 OS=Mus musc... [more]
ARL8_DROME1.997e-1934.91ADP-ribosylation factor-like protein 8 OS=Drosophi... [more]
ARL8_DICDI1.997e-1939.45ADP-ribosylation factor-like protein 8 OS=Dictyost... [more]

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Properties
Property NameValue
Genbank descriptionC21001G02Rv AbsLeaSub1 Citrus clementina cDNA clone C21001G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308599 ID=CX308599; Name=CX308599; organism=Citrus clementina; type=EST; length=351bp
AGTGGCGCTGCCTGAGGGAGTGGAGGCCAAGCTTATCAGTAATCTCAGCA
GCATTCATTGCATTTGGAAGATCCTGTTTGTTAGCAAATACAAGCAACAC
TGCATCTCGCAGCTCATCCTCATTCAACATCCTATGCAATTCATCCCTTG
CTTCTACAATACGGTCTCTGTCATTGCTGTCCACAACAAAAATGAGACCT
TGAGTGTTCTGGAAATAATGCCTCCACAAGGGACGAATCTTGTCCTGGCC
ACCAACATCCCACACAGTGAAACTGATGTTTTTATATTCAACGGTCTCCA
CATTAAACCCAATGGTAGGAATTGTGGTGACAATCTCTCCAAGCTTGAGC
T
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