CX308599

Overview
NameCX308599
Unique NameCX308599
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length351
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1_KLULA (Small COPII coat GTPase SAR1 OS=Kluyveromyces lactis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.793e-13
Identity = 41/109 (37.61%), Postives = 58/109 (53.21%), Query Frame = -3
Query:   23 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 349
            LK   + T  PT     E +   NI FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EAR EL  +    EL +    V  NK D P+A++  E+   LGL
Sbjct:   43 LKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHLQARRLWKDYFPEVNGIVFLVDAADPERFNEARIELDALFQIKELDNVPFAVLGNKIDSPSAVSETELRAALGL 151          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1A_DICDI (GTP-binding protein Sar1A OS=Dictyostelium discoideum GN=sarA PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.793e-13
Identity = 33/96 (34.38%), Postives = 57/96 (59.38%), Query Frame = -3
Query:   62 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPN 349
            LK G + + +PT     E +   NI F  +D+GG +  R LW+ Y+ +   +++++DS+ +DR VE++ EL  +L+ DEL +   L+  NK D+ N
Sbjct:   40 LKDGRLSSYLPTFHPTSEELAMGNIRFKAFDLGGHESARRLWKDYYPSVDAIVYLIDSSAQDRFVESKKELDSLLSSDELANVPFLILGNKVDIGN 135          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR2_SOLLC (GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.648e-13
Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = -3
Query:   23 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 349
            LK   +V   PT     E +   NI F  +D+GG    R +WR Y+     ++++VD+NDR+R  EA+ EL  +L+++ L +   L+  NK D+P A +  E+   LGL
Sbjct:   40 LKDERLVQHQPTQYPTSEELSIGNIKFKAFDLGGHQIARRVWRDYYAKVDAVVYLVDANDRERFPEAKKELDGLLSDESLTNVPFLILGNKIDIPYAASEDELRYHLGL 148          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: CIN4_YEAST (GTP-binding protein CIN4 OS=Saccharomyces cerevisiae GN=CIN4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.765e-13
Identity = 36/104 (34.62%), Postives = 59/104 (56.73%), Query Frame = -3
Query:   20 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELR---DAVLLVFANKQDLPNAMNAAEITDKLGLH 322
            +PT+GF + ++  K+++ ++WD+GGQ  +RP W +YF  TQ +I+ +D +   R  E   EL  ++N DE R   +  ++V  NK DL        + DK  LH
Sbjct:   48 MPTVGFQIHSLMIKDVTISLWDIGGQRTLRPFWDNYFDKTQAMIWCIDVSLSMRFDETLQELKELINRDENRIGYECAVIVVLNKIDL--------VEDKSELH 143          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: ARLX_DICDI (ADP-ribosylation factor-like protein DDB_G0292332 OS=Dictyostelium discoideum GN=DDB_G0292332 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.765e-13
Identity = 35/93 (37.63%), Postives = 56/93 (60.22%), Query Frame = -3
Query:   68 LGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYF-QNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDL 343
            L  +   IPT GFNVE++  + + F +WD+GG++  R  +RHY       +IFV DS+D + + E++ E   + N+  L++   L+ ANKQDL
Sbjct:   50 LSSLPIPIPTNGFNVESIVIEQVKFDIWDIGGKETNRICYRHYLTSEIDSIIFVFDSSDINSLEESKKEYQYLKNQISLKNVPFLLVANKQDL 142          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1_PICPG (Small COPII coat GTPase SAR1 OS=Pichia pastoris (strain GS115) GN=SAR1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.127e-13
Identity = 38/109 (34.86%), Postives = 59/109 (54.13%), Query Frame = -3
Query:   23 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 349
            LK   + T  PT     E +   N+ FT +D+GG ++ R +W+ YF    G++++VD  D +R  E+R EL  +L  +EL    +LV  NK D   A++  E+   LGL
Sbjct:   40 LKNDRLATLQPTWHPTSEELSIGNVRFTTFDLGGHEQARRVWKDYFPEVDGIVYLVDIADPERFEESRVELDALLKIEELSKVPVLVLGNKIDKSTAVSENELRHALGL 148          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNG (Small COPII coat GTPase SAR1 OS=Aspergillus niger GN=sar1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.386e-12
Identity = 36/110 (32.73%), Postives = 59/110 (53.64%), Query Frame = -3
Query:   20 LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 349
            LK   +    PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +   E++ EL  +L  +EL     L+  NK D P+A++  ++  +LGL+
Sbjct:   40 LKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHECFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDDVRHQLGLY 149          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1B_MOUSE (GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.811e-12
Identity = 28/101 (27.72%), Postives = 61/101 (60.40%), Query Frame = -3
Query:   20 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 322
            +PT+    E +    ++FT +D+GG  + R +W++Y     G++F+VD  D +R++E+++EL  ++ ++ + +  +L+  NK D P A++   + +  GL+
Sbjct:   54 VPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLY 154          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1B_HUMAN (GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.811e-12
Identity = 28/101 (27.72%), Postives = 61/101 (60.40%), Query Frame = -3
Query:   20 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 322
            +PT+    E +    ++FT +D+GG  + R +W++Y     G++F+VD  D +R++E+++EL  ++ ++ + +  +L+  NK D P A++   + +  GL+
Sbjct:   54 VPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLY 154          
BLAST of CX308599 vs. ExPASy Swiss-Prot
Match: SAR1B_CRIGR (GTP-binding protein SAR1b OS=Cricetulus griseus GN=SAR1B PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.811e-12
Identity = 28/101 (27.72%), Postives = 61/101 (60.40%), Query Frame = -3
Query:   20 IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 322
            +PT+    E +    ++FT +D+GG  + R +W++Y     G++F+VD  D +R++E+++EL  ++ ++ + +  +L+  NK D P A++   + +  GL+
Sbjct:   54 VPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLY 154          
The following BLAST results are available for this feature:
BLAST of CX308599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 212
Match NameE-valueIdentityDescription
SAR1_KLULA2.793e-1337.61Small COPII coat GTPase SAR1 OS=Kluyveromyces lact... [more]
SAR1A_DICDI2.793e-1334.38GTP-binding protein Sar1A OS=Dictyostelium discoid... [more]
SAR2_SOLLC3.648e-1334.86GTP-binding protein SAR2 OS=Solanum lycopersicum G... [more]
CIN4_YEAST4.765e-1334.62GTP-binding protein CIN4 OS=Saccharomyces cerevisi... [more]
ARLX_DICDI4.765e-1337.63ADP-ribosylation factor-like protein DDB_G0292332 ... [more]
SAR1_PICPG8.127e-1334.86Small COPII coat GTPase SAR1 OS=Pichia pastoris (s... [more]
SAR1_ASPNG1.386e-1232.73Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]
SAR1B_MOUSE1.811e-1227.72GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b... [more]
SAR1B_HUMAN1.811e-1227.72GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B... [more]
SAR1B_CRIGR1.811e-1227.72GTP-binding protein SAR1b OS=Cricetulus griseus GN... [more]

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Properties
Property NameValue
Genbank descriptionC21001G02Rv AbsLeaSub1 Citrus clementina cDNA clone C21001G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308599 ID=CX308599; Name=CX308599; organism=Citrus clementina; type=EST; length=351bp
AGTGGCGCTGCCTGAGGGAGTGGAGGCCAAGCTTATCAGTAATCTCAGCA
GCATTCATTGCATTTGGAAGATCCTGTTTGTTAGCAAATACAAGCAACAC
TGCATCTCGCAGCTCATCCTCATTCAACATCCTATGCAATTCATCCCTTG
CTTCTACAATACGGTCTCTGTCATTGCTGTCCACAACAAAAATGAGACCT
TGAGTGTTCTGGAAATAATGCCTCCACAAGGGACGAATCTTGTCCTGGCC
ACCAACATCCCACACAGTGAAACTGATGTTTTTATATTCAACGGTCTCCA
CATTAAACCCAATGGTAGGAATTGTGGTGACAATCTCTCCAAGCTTGAGC
T
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