CX308603

Overview
NameCX308603
Unique NameCX308603
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15093 contig Ccv1_Contig15093:429..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: ERF1_PONAB (Eukaryotic peptide chain release factor subunit 1 OS=Pongo abelii GN=ETF1 PE=2 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 6.055e-53
Identity = 100/129 (77.52%), Postives = 111/129 (86.05%), Query Frame = -3 
Query:    1 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 387
            GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHT+AL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKF+VDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q +I  +  + NV+GL
Sbjct:   98 GTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGL 224
[Close]
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: ERF1_PODAN (Eukaryotic peptide chain release factor subunit 1 OS=Podospora anserina GN=SU2 PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.055e-53
Identity = 100/129 (77.52%), Postives = 111/129 (86.05%), Query Frame = -3 
Query:    1 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 387
            G I+T +GKE+KV IDFEPF+PIN SLYLCDNKFHT+AL ELLESD KFGFIVMDGNG LFGTLSGNTR+++HKFSVDLPKKHGRGGQSALRFARLR EKRHNYVRK AELA Q +I     + NV G+
Sbjct:   99 GEILTSEGKERKVNIDFEPFKPINTSLYLCDNKFHTEALAELLESDQKFGFIVMDGNGALFGTLSGNTRDIVHKFSVDLPKKHGRGGQSALRFARLREEKRHNYVRKVAELAVQNFI--TNDKVNVMGI 225
[Close]
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: ERF1_MOUSE (Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4)

HSP 1 Score: 205.682 bits (522), Expect = 6.055e-53
Identity = 100/129 (77.52%), Postives = 111/129 (86.05%), Query Frame = -3 
Query:    1 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 387
            GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHT+AL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKF+VDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q +I  +  + NV+GL
Sbjct:   98 GTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGL 224
[Close]
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: ERF1_MESAU (Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus auratus GN=ETF1 PE=1 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 6.055e-53
Identity = 100/129 (77.52%), Postives = 111/129 (86.05%), Query Frame = -3 
Query:    1 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 387
            GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHT+AL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKF+VDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q +I  +  + NV+GL
Sbjct:   98 GTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGL 224
[Close]
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: ERF1_HUMAN (Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 6.055e-53
Identity = 100/129 (77.52%), Postives = 111/129 (86.05%), Query Frame = -3 
Query:    1 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 387
            GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHT+AL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKF+VDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q +I  +  + NV+GL
Sbjct:   98 GTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGL 224
[Close]
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: ERF1_BOVIN (Eukaryotic peptide chain release factor subunit 1 OS=Bos taurus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 205.682 bits (522), Expect = 6.055e-53
Identity = 100/129 (77.52%), Postives = 111/129 (86.05%), Query Frame = -3 
Query:    1 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 387
            GTIVT++GKEKKV IDFEPF+PIN SLYLCDNKFHT+AL  LL  D KFGFIV+DG+G LFGTL GNTREVLHKF+VDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q +I  +  + NV+GL
Sbjct:   98 GTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFI--SGDKVNVAGL 224
[Close]
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: ERF1_YEAST (Eukaryotic peptide chain release factor subunit 1 OS=Saccharomyces cerevisiae GN=SUP1 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 5.126e-52
Identity = 97/129 (75.19%), Postives = 111/129 (86.05%), Query Frame = -3 
Query:    1 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 387
            G I+T+DGKEKKVT D EP++PIN SLYLCDNKFHT+ L+ELL++DDKFGFIVMDG GTLFG++SGNTR VLHKF+VDLPKKHGRGGQSALRFARLR EKRHNYVRK AE+A Q +I     + NV GL
Sbjct:   95 GDIITEDGKEKKVTFDIEPYKPINTSLYLCDNKFHTEVLSELLQADDKFGFIVMDGQGTLFGSVSGNTRTVLHKFTVDLPKKHGRGGQSALRFARLREEKRHNYVRKVAEVAVQNFI--TNDKVNVKGL 221
[Close]
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: ERF1_CRYHO (Eukaryotic peptide chain release factor subunit 1 OS=Cryptosporidium hominis GN=erf1 PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 5.667e-51
Identity = 94/129 (72.87%), Postives = 110/129 (85.27%), Query Frame = -3 
Query:    1 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 387
            GT++T+DGKEKKV IDFEPF+PIN SLYLCDNKFH DAL ELLE+DDKFGFI++DGNG L+G + G++REVL +F+VDLPKKHGRGGQSALRFARLRMEKRHNY+RK AE AT  +I     Q NV+ L
Sbjct:   94 GTLITEDGKEKKVNIDFEPFKPINTSLYLCDNKFHVDALKELLETDDKFGFIIVDGNGALYGVVQGSSREVLLRFNVDLPKKHGRGGQSALRFARLRMEKRHNYLRKVAETATTMFI--TNDQVNVAAL 220
[Close]
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: ERF1_CAEEL (Eukaryotic peptide chain release factor subunit 1 OS=Caenorhabditis elegans GN=erf-1 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 8.183e-50
Identity = 95/129 (73.64%), Postives = 108/129 (83.72%), Query Frame = -3 
Query:    1 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 387
            GTI+TD+GKEKKV IDFEPF+ IN SLYLCDNKFHT+AL  LL  D+KFGFI+MDGNG LFGTL GNTREVLHKF+VDLPKKHGRGGQSA+RFARLR EKRHNYVRK AE + + +I     +  V+GL
Sbjct:  106 GTIMTDEGKEKKVNIDFEPFKAINTSLYLCDNKFHTEALQGLLADDNKFGFIIMDGNGCLFGTLQGNTREVLHKFTVDLPKKHGRGGQSAVRFARLRNEKRHNYVRKVAENSVEQFIK--NDKVTVAGL 232
[Close]
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: ERF1_SCHPO (Eukaryotic peptide chain release factor subunit 1 OS=Schizosaccharomyces pombe GN=sup45 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 1.223e-45
Identity = 87/129 (67.44%), Postives = 105/129 (81.40%), Query Frame = -3 
Query:    1 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 387
            G ++ +  K +K+ IDFEPF+PIN S YLCDNKFHT+AL ELLESD +FGFIVMDG+ TL+G +SG+ REVL +F+VDLPKKHGRGGQSALRFARLR EKRHNYVRK AE A Q +I     +PNV+G+
Sbjct:   95 GEVIMEGNKTRKLNIDFEPFKPINTSQYLCDNKFHTEALAELLESDQRFGFIVMDGHQTLYGVVSGSAREVLQRFTVDLPKKHGRGGQSALRFARLRDEKRHNYVRKVAEGAVQHFI--TDDKPNVAGI 221
The following BLAST results are available for this feature:
BLAST of CX308603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
ERF1_PONAB6.055e-5377.52Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_PODAN6.055e-5377.52Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MOUSE6.055e-5377.52Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MESAU6.055e-5377.52Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_HUMAN6.055e-5377.52Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BOVIN6.055e-5377.52Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_YEAST5.126e-5275.19Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_CRYHO5.667e-5172.87Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_CAEEL8.183e-5073.64Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_SCHPO1.223e-4567.44Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC21001G06Rv AbsLeaSub1 Citrus clementina cDNA clone C21001G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308603 ID=CX308603; Name=CX308603; organism=Citrus clementina; type=EST; length=389bp
TAGTCCCGAAACATTAGGCTGGCTAGTGGCAGGATTGATATAAAACTGTG
TGGCAAGTTCAGCTGTTTTCCTCACATAGTTATGGCGCTTCTCCATTCGA
AGTCGGGCAAACCGAAGGGCTGACTGTCCACCTCTTCCATGTTTCTTTGG
AAGGTCAACACTGAACTTGTGAAGCACCTCACGGGTGTTACCACTTAGAG
TCCCAAAAAGGGTTCCATTACCATCCATGACAATAAAACCAAACTTGTCA
TCAGACTCCAACAGTTCATTCAGAGCGTCAGTGTGAAACTTATTGTCACA
GAGGTAAAGAGATGCATTAATAGGCCTGAAAGGCTCGAAGTCAATTGTAA
CCTTCTTTTCCTTCCCATCATCAGTAACAATTGTTCCCG
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