CX308603
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_PYRAB (Peptide chain release factor subunit 1 OS=Pyrococcus abyssi GN=prf1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 2.105e-13 Identity = 37/111 (33.33%), Postives = 61/111 (54.95%), Query Frame = -3 Query: 1 PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 333 P P+N LY CD F T+ L E+L D +G I ++ N G L G EVL + + ++P K GGQSA R+ R+R ++ H ++++ E A + ++ P + + G+ Sbjct: 113 PPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVLDELTSNVPGKTRAGGQSARRYERIREQETHEFMKRIGEHANRVFL-PLLEKGELKGI 222
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_THESM (Peptide chain release factor subunit 1 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=prf1 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.749e-13 Identity = 38/129 (29.46%), Postives = 64/129 (49.61%), Query Frame = -3 Query: 1 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 387 G + +G P P+N LY CD F T+ L E+L D +G I ++ N G L G EV+ + ++P K GGQSA R+ R+R ++ H ++++ E A+ ++ P + + G+ Sbjct: 92 GNVSEQEGVSDIRVFAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGILRGKKIEVIEDLTSNVPGKTRAGGQSARRYERIREQEAHEFMKRIGEHASSVFL-PLLEKDELKGI 219
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_HALWD (Peptide chain release factor subunit 1 OS=Haloquadratum walsbyi (strain DSM 16790) GN=prf1 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 2.749e-13 Identity = 43/118 (36.44%), Postives = 61/118 (51.69%), Query Frame = -3 Query: 37 GTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYI 387 G + T G+ VT E P P+ + Y CD+ F TD L ++L FG IV+D G L G E + S +P K +GGQSA RFARLR+E N+ ++ A +A ++ Sbjct: 99 GAVSTGGGQTTMVTRSLESPPEPVQSFRYHCDSDFLTDPLEDMLADKGLFGLIVLDRREANVGWLKGKRVEPVKSASSLVPGKQRKGGQSAQRFARLRLEAIDNFYQEVAGMANDLFV 216
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_PYRKO (Peptide chain release factor subunit 1 OS=Pyrococcus kodakaraensis GN=prf1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13 Identity = 34/99 (34.34%), Postives = 56/99 (56.57%), Query Frame = -3 Query: 37 PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYI 333 P P+N LY CD F T+ L E+L D +G I ++ N G L G EV+ + + ++P K GGQSA R+ R+R ++ H ++++ E A + ++ Sbjct: 110 PPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVIDELTSNVPGKTRAGGQSARRYERIREQETHEFMKRIGEHANKAFL 208
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_PYRHO (Peptide chain release factor subunit 1 OS=Pyrococcus horikoshii GN=prf1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13 Identity = 36/111 (32.43%), Postives = 61/111 (54.95%), Query Frame = -3 Query: 1 PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 333 P P+N LY CD F T+ L E+L D +G I ++ N G L G E+L + + ++P K GGQSA R+ R+R ++ H ++++ E A + ++ P + + G+ Sbjct: 113 PPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIELLDELTSNVPGKTRAGGQSARRYERIREQETHEFMKRIGEHANRAFL-PLLEKGELKGI 222
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_PYRFU (Peptide chain release factor subunit 1 OS=Pyrococcus furiosus GN=prf1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13 Identity = 34/99 (34.34%), Postives = 56/99 (56.57%), Query Frame = -3 Query: 37 PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYI 333 P P+N LY CD F T+ L E+L + +G I ++ N G L G EVL + + ++P K GGQSA R+ R+R ++ H ++++ E A + ++ Sbjct: 113 PPEPLNVRLYRCDQTFVTEPLEEMLRVKEAYGLITVEKNEATIGILRGKRIEVLDELTSNVPGKTRAGGQSARRYERIREQETHEFMKRIGEHANRIFL 211
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_HALLT (Peptide chain release factor subunit 1 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=prf1 PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 8.000e-13 Identity = 43/119 (36.13%), Postives = 62/119 (52.10%), Query Frame = -3 Query: 34 GTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYIN 387 G I G+ VT E P +P+ + Y CD+ F T+ L +LE FG IV+D G L G E + S +P K +GGQSA RFARLR+E N+ ++ A +A +++ Sbjct: 99 GAIDAGGGQTDMVTRTLESPPQPVESFRYHCDSAFLTEPLEHMLEDSGLFGLIVLDRREANVGWLKGKRVEPVKSASSLVPGKQRKGGQSAQRFARLRLEAIDNFYQEVAGMADDLFVD 217
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_METTH (Peptide chain release factor subunit 1 OS=Methanobacterium thermoautotrophicum GN=prf1 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.045e-12 Identity = 36/110 (32.73%), Postives = 57/110 (51.82%), Query Frame = -3 Query: 37 GKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYI 366 G EK T FEP PI +Y C+++F+ + L E+LE + +G V+D TL G ++L + +P KH GGQS RF RL H ++++ E + ++ Sbjct: 101 GTEKMETYVFEPPEPIKTYIYHCNSEFYLEPLREMLEEKETYGLAVLDRKEATIATLKGKRIDILKTLTSGVPGKHKAGGQSQRRFDRLIDLAAHEFLKRIGEHMNEAFL 210
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_THEON (Peptide chain release factor subunit 1 OS=Thermococcus onnurineus (strain NA1) GN=prf1 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 1.365e-12 Identity = 36/111 (32.43%), Postives = 60/111 (54.05%), Query Frame = -3 Query: 1 PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 333 P P+ LY CD F T+ L E+L D +G I ++ N G L G EV+ + ++P K GGQSA R+ R+R ++ H ++++ AE A + ++ P + + G+ Sbjct: 110 PPEPLKVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVIDDLTSNVPGKTRAGGQSARRYERIREQETHEFMKRIAEHAAKAFL-PLLEKGELKGI 219
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_METJA (Peptide chain release factor subunit 1 OS=Methanocaldococcus jannaschii GN=prf1 PE=3 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 1.365e-12 Identity = 38/122 (31.15%), Postives = 61/122 (50.00%), Query Frame = -3 Query: 1 GKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 366 G EK T EP PI +Y CD++F+ + L E LE D +G I++D N + G +L K + +P K GGQSA R RL H ++++ + A + ++ P + + G+ Sbjct: 101 GTEKMETYVIEPPEPIKTYIYRCDSEFYLEPLEEFLEDKDAYGVILVDRNEATIALVKGRNINILKKLTSGVPGKFKAGGQSARRLERLIDLAAHEFLQRVGQKANEQFL-PLLQEKKLRGI 221 The following BLAST results are available for this feature:
BLAST of CX308603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >CX308603 ID=CX308603; Name=CX308603; organism=Citrus clementina; type=EST; length=389bpback to top |