CX308603

Overview
NameCX308603
Unique NameCX308603
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15093 contig Ccv1_Contig15093:429..817. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_PYRAB (Peptide chain release factor subunit 1 OS=Pyrococcus abyssi GN=prf1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.105e-13
Identity = 37/111 (33.33%), Postives = 61/111 (54.95%), Query Frame = -3
Query:    1 PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 333
            P  P+N  LY CD  F T+ L E+L   D +G I ++ N    G L G   EVL + + ++P K   GGQSA R+ R+R ++ H ++++  E A + ++ P   +  + G+
Sbjct:  113 PPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVLDELTSNVPGKTRAGGQSARRYERIREQETHEFMKRIGEHANRVFL-PLLEKGELKGI 222          
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_THESM (Peptide chain release factor subunit 1 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=prf1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.749e-13
Identity = 38/129 (29.46%), Postives = 64/129 (49.61%), Query Frame = -3
Query:    1 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 387
            G +   +G          P  P+N  LY CD  F T+ L E+L   D +G I ++ N    G L G   EV+   + ++P K   GGQSA R+ R+R ++ H ++++  E A+  ++ P   +  + G+
Sbjct:   92 GNVSEQEGVSDIRVFAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGILRGKKIEVIEDLTSNVPGKTRAGGQSARRYERIREQEAHEFMKRIGEHASSVFL-PLLEKDELKGI 219          
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_HALWD (Peptide chain release factor subunit 1 OS=Haloquadratum walsbyi (strain DSM 16790) GN=prf1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.749e-13
Identity = 43/118 (36.44%), Postives = 61/118 (51.69%), Query Frame = -3
Query:   37 GTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYI 387
            G + T  G+   VT   E P  P+ +  Y CD+ F TD L ++L     FG IV+D      G L G   E +   S  +P K  +GGQSA RFARLR+E   N+ ++ A +A   ++
Sbjct:   99 GAVSTGGGQTTMVTRSLESPPEPVQSFRYHCDSDFLTDPLEDMLADKGLFGLIVLDRREANVGWLKGKRVEPVKSASSLVPGKQRKGGQSAQRFARLRLEAIDNFYQEVAGMANDLFV 216          
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_PYRKO (Peptide chain release factor subunit 1 OS=Pyrococcus kodakaraensis GN=prf1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13
Identity = 34/99 (34.34%), Postives = 56/99 (56.57%), Query Frame = -3
Query:   37 PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYI 333
            P  P+N  LY CD  F T+ L E+L   D +G I ++ N    G L G   EV+ + + ++P K   GGQSA R+ R+R ++ H ++++  E A + ++
Sbjct:  110 PPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVIDELTSNVPGKTRAGGQSARRYERIREQETHEFMKRIGEHANKAFL 208          
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_PYRHO (Peptide chain release factor subunit 1 OS=Pyrococcus horikoshii GN=prf1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13
Identity = 36/111 (32.43%), Postives = 61/111 (54.95%), Query Frame = -3
Query:    1 PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 333
            P  P+N  LY CD  F T+ L E+L   D +G I ++ N    G L G   E+L + + ++P K   GGQSA R+ R+R ++ H ++++  E A + ++ P   +  + G+
Sbjct:  113 PPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIELLDELTSNVPGKTRAGGQSARRYERIREQETHEFMKRIGEHANRAFL-PLLEKGELKGI 222          
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_PYRFU (Peptide chain release factor subunit 1 OS=Pyrococcus furiosus GN=prf1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.125e-13
Identity = 34/99 (34.34%), Postives = 56/99 (56.57%), Query Frame = -3
Query:   37 PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYI 333
            P  P+N  LY CD  F T+ L E+L   + +G I ++ N    G L G   EVL + + ++P K   GGQSA R+ R+R ++ H ++++  E A + ++
Sbjct:  113 PPEPLNVRLYRCDQTFVTEPLEEMLRVKEAYGLITVEKNEATIGILRGKRIEVLDELTSNVPGKTRAGGQSARRYERIREQETHEFMKRIGEHANRIFL 211          
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_HALLT (Peptide chain release factor subunit 1 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=prf1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.000e-13
Identity = 43/119 (36.13%), Postives = 62/119 (52.10%), Query Frame = -3
Query:   34 GTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYIN 387
            G I    G+   VT   E P +P+ +  Y CD+ F T+ L  +LE    FG IV+D      G L G   E +   S  +P K  +GGQSA RFARLR+E   N+ ++ A +A   +++
Sbjct:   99 GAIDAGGGQTDMVTRTLESPPQPVESFRYHCDSAFLTEPLEHMLEDSGLFGLIVLDRREANVGWLKGKRVEPVKSASSLVPGKQRKGGQSAQRFARLRLEAIDNFYQEVAGMADDLFVD 217          
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_METTH (Peptide chain release factor subunit 1 OS=Methanobacterium thermoautotrophicum GN=prf1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.045e-12
Identity = 36/110 (32.73%), Postives = 57/110 (51.82%), Query Frame = -3
Query:   37 GKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYI 366
            G EK  T  FEP  PI   +Y C+++F+ + L E+LE  + +G  V+D       TL G   ++L   +  +P KH  GGQS  RF RL     H ++++  E   + ++
Sbjct:  101 GTEKMETYVFEPPEPIKTYIYHCNSEFYLEPLREMLEEKETYGLAVLDRKEATIATLKGKRIDILKTLTSGVPGKHKAGGQSQRRFDRLIDLAAHEFLKRIGEHMNEAFL 210          
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_THEON (Peptide chain release factor subunit 1 OS=Thermococcus onnurineus (strain NA1) GN=prf1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.365e-12
Identity = 36/111 (32.43%), Postives = 60/111 (54.05%), Query Frame = -3
Query:    1 PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 333
            P  P+   LY CD  F T+ L E+L   D +G I ++ N    G L G   EV+   + ++P K   GGQSA R+ R+R ++ H ++++ AE A + ++ P   +  + G+
Sbjct:  110 PPEPLKVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVIDDLTSNVPGKTRAGGQSARRYERIREQETHEFMKRIAEHAAKAFL-PLLEKGELKGI 219          
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_METJA (Peptide chain release factor subunit 1 OS=Methanocaldococcus jannaschii GN=prf1 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 1.365e-12
Identity = 38/122 (31.15%), Postives = 61/122 (50.00%), Query Frame = -3
Query:    1 GKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGL 366
            G EK  T   EP  PI   +Y CD++F+ + L E LE  D +G I++D N      + G    +L K +  +P K   GGQSA R  RL     H ++++  + A + ++ P   +  + G+
Sbjct:  101 GTEKMETYVIEPPEPIKTYIYRCDSEFYLEPLEEFLEDKDAYGVILVDRNEATIALVKGRNINILKKLTSGVPGKFKAGGQSARRLERLIDLAAHEFLQRVGQKANEQFL-PLLQEKKLRGI 221          
The following BLAST results are available for this feature:
BLAST of CX308603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RF1_PYRAB2.105e-1333.33Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_THESM2.749e-1329.46Peptide chain release factor subunit 1 OS=Thermoco... [more]
RF1_HALWD2.749e-1336.44Peptide chain release factor subunit 1 OS=Haloquad... [more]
RF1_PYRKO6.125e-1334.34Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_PYRHO6.125e-1332.43Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_PYRFU6.125e-1334.34Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_HALLT8.000e-1336.13Peptide chain release factor subunit 1 OS=Halorubr... [more]
RF1_METTH1.045e-1232.73Peptide chain release factor subunit 1 OS=Methanob... [more]
RF1_THEON1.365e-1232.43Peptide chain release factor subunit 1 OS=Thermoco... [more]
RF1_METJA1.365e-1231.15Peptide chain release factor subunit 1 OS=Methanoc... [more]

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Properties
Property NameValue
Genbank descriptionC21001G06Rv AbsLeaSub1 Citrus clementina cDNA clone C21001G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308603 ID=CX308603; Name=CX308603; organism=Citrus clementina; type=EST; length=389bp
TAGTCCCGAAACATTAGGCTGGCTAGTGGCAGGATTGATATAAAACTGTG
TGGCAAGTTCAGCTGTTTTCCTCACATAGTTATGGCGCTTCTCCATTCGA
AGTCGGGCAAACCGAAGGGCTGACTGTCCACCTCTTCCATGTTTCTTTGG
AAGGTCAACACTGAACTTGTGAAGCACCTCACGGGTGTTACCACTTAGAG
TCCCAAAAAGGGTTCCATTACCATCCATGACAATAAAACCAAACTTGTCA
TCAGACTCCAACAGTTCATTCAGAGCGTCAGTGTGAAACTTATTGTCACA
GAGGTAAAGAGATGCATTAATAGGCCTGAAAGGCTCGAAGTCAATTGTAA
CCTTCTTTTCCTTCCCATCATCAGTAACAATTGTTCCCG
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