CX308603

Overview
NameCX308603
Unique NameCX308603
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length389
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_HALMA (Peptide chain release factor subunit 1 OS=Haloarcula marismortui GN=prf1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.185e-12
Identity = 43/118 (36.44%), Postives = 60/118 (50.85%), Query Frame = -3
Query:   37 GTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYI 387
            G   T  G+   VT   E P  PI +  Y CD++F T+ L  +L     FG IV+D      G L G   E +   S  +P K  +GGQSA RFARLR+E   N+ ++ A +A   ++
Sbjct:   99 GAFDTGGGRTDMVTKVLESPPDPIESFRYHCDSEFLTEPLEHMLADKGLFGLIVLDRREANVGWLKGKRVEPVKSASSLVPGKQRKGGQSAQRFARLRLEAIDNFYQEVAGMANDLFV 216          
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_PICTO (Peptide chain release factor subunit 1 OS=Picrophilus torridus GN=prf1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.772e-12
Identity = 39/117 (33.33%), Postives = 58/117 (49.57%), Query Frame = -3
Query:   37 GTIVTDDGKEKKVTIDFEPFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYI 387
            G I T   + +  T   EP  PI   +Y CD+ FH + L   L+  D +G IV+D      G L G   EV+      +P KH +GGQS+ RF RL     +++ +K  E+A   ++
Sbjct:   92 GHIATRGDQTEMYTKIIEPPEPIQTFMYKCDSNFHLEQLESQLKEKDIYGLIVIDRKEATVGFLKGTRIEVVDYEQSLVPSKHHQGGQSSRRFERLIEIAANDFFKKIGEIANNAFM 208          
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_HALSA (Peptide chain release factor subunit 1 OS=Halobacterium salinarium GN=prf1 PE=3 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.390e-11
Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = -3
Query:   37 GTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYI 387
            G + +  G+   VT   E P +PI +  Y CD+ F T+ L E+L     +G IV+D   +  G L G   + +      +P K  +GGQSA RFARLR+E   N+ ++ A +A   ++
Sbjct:   99 GAVDSGGGRTDMVTEVLESPPQPIESFRYHCDSAFLTEPLAEMLGDKGLYGLIVLDRRESNVGWLKGKRVQPVKSAESLVPGKQRKGGQSAQRFARLRLEAIDNFYQEVAGMADDLFV 216          
BLAST of CX308603 vs. ExPASy Swiss-Prot
Match: RF1_HALS3 (Peptide chain release factor subunit 1 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=prf1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.390e-11
Identity = 40/118 (33.90%), Postives = 62/118 (52.54%), Query Frame = -3
Query:   37 GTIVTDDGKEKKVTIDFE-PFRPINASLYLCDNKFHTDALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYI 387
            G + +  G+   VT   E P +PI +  Y CD+ F T+ L E+L     +G IV+D   +  G L G   + +      +P K  +GGQSA RFARLR+E   N+ ++ A +A   ++
Sbjct:   99 GAVDSGGGRTDMVTEVLESPPQPIESFRYHCDSAFLTEPLAEMLGDKGLYGLIVLDRRESNVGWLKGKRVQPVKSAESLVPGKQRKGGQSAQRFARLRLEAIDNFYQEVAGMADDLFV 216          
The following BLAST results are available for this feature:
BLAST of CX308603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RF1_HALMA5.185e-1236.44Peptide chain release factor subunit 1 OS=Haloarcu... [more]
RF1_PICTO6.772e-1233.33Peptide chain release factor subunit 1 OS=Picrophi... [more]
RF1_HALSA4.390e-1133.90Peptide chain release factor subunit 1 OS=Halobact... [more]
RF1_HALS34.390e-1133.90Peptide chain release factor subunit 1 OS=Halobact... [more]

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Properties
Property NameValue
Genbank descriptionC21001G06Rv AbsLeaSub1 Citrus clementina cDNA clone C21001G06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308603 ID=CX308603; Name=CX308603; organism=Citrus clementina; type=EST; length=389bp
TAGTCCCGAAACATTAGGCTGGCTAGTGGCAGGATTGATATAAAACTGTG
TGGCAAGTTCAGCTGTTTTCCTCACATAGTTATGGCGCTTCTCCATTCGA
AGTCGGGCAAACCGAAGGGCTGACTGTCCACCTCTTCCATGTTTCTTTGG
AAGGTCAACACTGAACTTGTGAAGCACCTCACGGGTGTTACCACTTAGAG
TCCCAAAAAGGGTTCCATTACCATCCATGACAATAAAACCAAACTTGTCA
TCAGACTCCAACAGTTCATTCAGAGCGTCAGTGTGAAACTTATTGTCACA
GAGGTAAAGAGATGCATTAATAGGCCTGAAAGGCTCGAAGTCAATTGTAA
CCTTCTTTTCCTTCCCATCATCAGTAACAATTGTTCCCG
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