CX308617

Overview
NameCX308617
Unique NameCX308617
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length322
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig662 contig Ccv1_Contig662:899..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: BEE2_ARATH (Transcription factor BEE 2 OS=Arabidopsis thaliana GN=BEE2 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.874e-27
Identity = 59/85 (69.41%), Postives = 69/85 (81.18%), Query Frame = -2
Query:   67 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPPKDF 321
            ARRG+ATD HSLAERARREKIS++MK LQD+VPGCNKV GKA +LDEIINY+QSLQ+QVEFLSMKL  +N  +   I+    K F
Sbjct:  143 ARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVEFLSMKLSVINPELECHIDDLSAKQF 227          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: BH137_ARATH (Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.426e-25
Identity = 56/70 (80.00%), Postives = 65/70 (92.86%), Query Frame = -2
Query:  112 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN 321
            ARRGQATDSHSLAER RREKISERM+ LQ+LVPGC+KV GKAL+LDEIINY+Q+LQ QVEFLSMKL +++
Sbjct:  138 ARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSIS 207          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: BH048_ARATH (Transcription factor bHLH48 OS=Arabidopsis thaliana GN=BHLH48 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.426e-25
Identity = 56/74 (75.68%), Postives = 68/74 (91.89%), Query Frame = -2
Query:  100 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMN 321
            ARRGQATD+HSLAERARREKI+ RMK+LQ+LVPGC+K+ G ALVLDEIIN++Q+LQRQVE LSM+L AVN R++
Sbjct:  187 ARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQTLQRQVEMLSMRLAAVNPRID 260          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: BEE3_ARATH (Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.973e-23
Identity = 52/71 (73.24%), Postives = 61/71 (85.92%), Query Frame = -2
Query:  109 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNT 321
            ARRGQATDSHS+AER RR KI+ER+K LQD+VPGC K +G A +LDEIINY+QSLQ QVEFLSMKL A ++
Sbjct:  149 ARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQVEFLSMKLTAASS 219          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: BEE1_ARATH (Transcription factor BEE 1 OS=Arabidopsis thaliana GN=BEE1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.883e-23
Identity = 52/71 (73.24%), Postives = 61/71 (85.92%), Query Frame = -2
Query:  109 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNT 321
            ARRGQATDSHSLAER RR KI+ER++ LQD+VPGC K +G A +LDEIINY+QSLQ QVEFLSMKL A ++
Sbjct:  147 ARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQVEFLSMKLTAASS 217          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: BH075_ARATH (Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.927e-22
Identity = 50/70 (71.43%), Postives = 61/70 (87.14%), Query Frame = -2
Query:  112 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN 321
            A+RGQATDSHSLAER RREKI+ER+K LQDLVPGC K +G A++LD II+Y++SLQ Q+EFLSMKL A +
Sbjct:  106 AKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQNQIEFLSMKLSAAS 175          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: BH060_ARATH (Transcription factor bHLH60 OS=Arabidopsis thaliana GN=BHLH60 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.527e-19
Identity = 58/121 (47.93%), Postives = 68/121 (56.20%), Query Frame = -2
Query:  100 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNK-----------------------------------------------VIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMN 321
            ARRGQATDSHSLAERARREKI+ RMK+LQ+LVPGC+K                                               + G ALVLDEIIN++QSLQRQVE LSM+L AVN R++
Sbjct:  206 ARRGQATDSHSLAERARREKINARMKLLQELVPGCDKGTDFGGKIKIKVCFGVHLLMISGKKVAIFLWKVSCEDLIDCSFSPPRIQGTALVLDEIINHVQSLQRQVEMLSMRLAAVNPRID 326          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: BH082_ARATH (Transcription factor bHLH82 OS=Arabidopsis thaliana GN=BHLH82 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.282e-15
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = -2
Query:  130 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 321
            ARRGQATD HS+AER RRE+I+ERMK LQ+LVP  NK   KA +LDEII Y++ LQ QV+ LSM
Sbjct:  101 ARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKT-DKASMLDEIIEYVRFLQLQVKVLSM 163          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: BH066_ARATH (Transcription factor bHLH66 OS=Arabidopsis thaliana GN=BHLH66 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.282e-15
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = -2
Query:  130 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 321
            ARRGQATD HS+AER RRE+I+ERMK LQ+LVP  NK   KA +LDEII+Y++ LQ QV+ LSM
Sbjct:  140 ARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKT-DKASMLDEIIDYVKFLQLQVKVLSM 202          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: BH069_ARATH (Transcription factor bHLH69 OS=Arabidopsis thaliana GN=BHLH69 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.980e-15
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = -2
Query:  130 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 321
            ARRGQATD HS+AER RRE+I+ERMK LQ+LVP  NK   KA +LDEII+Y++ LQ QV+ LSM
Sbjct:  132 ARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKT-DKASMLDEIIDYVKFLQLQVKVLSM 194          
The following BLAST results are available for this feature:
BLAST of CX308617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
BEE2_ARATH9.874e-2769.41Transcription factor BEE 2 OS=Arabidopsis thaliana... [more]
BH137_ARATH1.426e-2580.00Transcription factor bHLH137 OS=Arabidopsis thalia... [more]
BH048_ARATH1.426e-2575.68Transcription factor bHLH48 OS=Arabidopsis thalian... [more]
BEE3_ARATH2.973e-2373.24Transcription factor BEE 3 OS=Arabidopsis thaliana... [more]
BEE1_ARATH3.883e-2373.24Transcription factor BEE 1 OS=Arabidopsis thaliana... [more]
BH075_ARATH1.927e-2271.43Transcription factor bHLH75 OS=Arabidopsis thalian... [more]
BH060_ARATH1.527e-1947.93Transcription factor bHLH60 OS=Arabidopsis thalian... [more]
BH082_ARATH2.282e-1567.19Transcription factor bHLH82 OS=Arabidopsis thalian... [more]
BH066_ARATH2.282e-1567.19Transcription factor bHLH66 OS=Arabidopsis thalian... [more]
BH069_ARATH2.980e-1567.19Transcription factor bHLH69 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionC21001H11Rv AbsLeaSub1 Citrus clementina cDNA clone C21001H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308617 ID=CX308617; Name=CX308617; organism=Citrus clementina; type=EST; length=322bp
ACGGCTGTATTCTCTTGTAGCTTGAGAACCAAATGGCATGCCCGCAGTAT
CAAATGTTTGTTGAGTAAAATCTTTAGGAGGAAATACCTCAATGCCAGGG
TTCATTCTTGTATTGACTGCTTCAAGCTTCATTGACAGAAACTCAACCTG
CCGCTGTAGCGATTGGATGTAGTTAATTATCTCATCCAGGACCAATGCTT
TGCCGATGACCTTGTTACAACCAGGAACCAAGTCCTGGAGAATTTTCATC
CTTTCGCTTATCTTTTCTCTCCTAGCTCTTTCTGCTAAACTGTGGCTATC
AGTAGCTTGGCCCCTTCTTGCT
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