CX308617

Overview
NameCX308617
Unique NameCX308617
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length322
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig662 contig Ccv1_Contig662:899..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: UNE12_ARATH (Transcription factor UNE12 OS=Arabidopsis thaliana GN=UNE12 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.635e-13
Identity = 37/64 (57.81%), Postives = 52/64 (81.25%), Query Frame = -2
Query:  130 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 321
            ARRGQATD HS+AER RRE+I+ER++ LQ+LVP  NK   +A ++DEI++Y++ L+ QV+ LSM
Sbjct:  148 ARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKT-DRAAMIDEIVDYVKFLRLQVKVLSM 210          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: BH007_ARATH (Transcription factor bHLH7 OS=Arabidopsis thaliana GN=BHLH7 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.136e-13
Identity = 37/64 (57.81%), Postives = 52/64 (81.25%), Query Frame = -2
Query:  130 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 321
            ARRGQATD HS+AER RRE+I+ER++ LQ+LVP  NK   +A ++DEI++Y++ L+ QV+ LSM
Sbjct:  146 ARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKT-DRAAMIDEIVDYVKFLRLQVKVLSM 208          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: PIF1_ARATH (Transcription factor PIF1 OS=Arabidopsis thaliana GN=PIF1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.060e-12
Identity = 37/81 (45.68%), Postives = 57/81 (70.37%), Query Frame = -2
Query:   76 RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPP 318
            +R +A + H+L+ER RR++I+ERMK LQ+L+P CNK   KA +LDE I Y++SLQ Q++ +SM    +   M PG++ + P
Sbjct:  281 KRSRAAEVHNLSERKRRDRINERMKALQELIPRCNK-SDKASMLDEAIEYMKSLQLQIQMMSMGC-GMMPMMYPGMQQYMP 359          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: PIF3_ARATH (Transcription factor PIF3 OS=Arabidopsis thaliana GN=PIF3 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.808e-12
Identity = 37/82 (45.12%), Postives = 59/82 (71.95%), Query Frame = -2
Query:   76 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNTRMNPGIEVFPP 321
            ++R ++ + H+L+ER RR++I+E+M+ LQ+L+P CNKV  KA +LDE I Y++SLQ QV+ +SM   A    + P + +FPP
Sbjct:  339 SKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKV-DKASMLDEAIEYLKSLQLQVQIMSM---ASGYYLPPAV-MFPP 415          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: PIF4_ARATH (Transcription factor PIF4 OS=Arabidopsis thaliana GN=PIF4 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.870e-12
Identity = 40/100 (40.00%), Postives = 62/100 (62.00%), Query Frame = -2
Query:   34 RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM-----KLEAVNTRMNPGIEVFPPKDFTQQTFDTAGMP 318
            RR +A + H+L+ER RR++I+ERMK LQ+L+P C+K   KA +LDE I+Y++SLQ Q++ + M        A    M PG++   P+ F +Q      +P
Sbjct:  254 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKT-DKASILDEAIDYLKSLQLQLQVMWMGSGMAAAAASAPMMFPGVQ---PQQFIRQIQSPVQLP 349          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: PIF5_ARATH (Transcription factor PIF5 OS=Arabidopsis thaliana GN=PIF5 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.530e-11
Identity = 36/87 (41.38%), Postives = 57/87 (65.52%), Query Frame = -2
Query:   79 RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM-------KLEAVNTRMNPGIEVFP 318
            RR +A + H+L+ER RR++I+ERMK LQ+L+P C++   KA +LDE I+Y++SLQ Q++ + M          A +  M PG++  P
Sbjct:  253 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRT-DKASILDEAIDYLKSLQMQLQVMWMGSGMAAAAAAAASPMMFPGVQSSP 338          
BLAST of CX308617 vs. ExPASy Swiss-Prot
Match: BH119_ARATH (Transcription factor bHLH119 OS=Arabidopsis thaliana GN=BHLH119 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.530e-11
Identity = 31/63 (49.21%), Postives = 48/63 (76.19%), Query Frame = -2
Query:  130 RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 318
            +R +A D H+L+ER RRE+I+ERMK LQ+L+P C K   K  +L+++I Y++SLQ Q++ +SM
Sbjct:  354 KRSRAADMHNLSERRRRERINERMKTLQELLPRCRKT-DKVSMLEDVIEYVKSLQLQIQMMSM 415          
The following BLAST results are available for this feature:
BLAST of CX308617 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
UNE12_ARATH1.635e-1357.81Transcription factor UNE12 OS=Arabidopsis thaliana... [more]
BH007_ARATH2.136e-1357.81Transcription factor bHLH7 OS=Arabidopsis thaliana... [more]
PIF1_ARATH1.060e-1245.68Transcription factor PIF1 OS=Arabidopsis thaliana ... [more]
PIF3_ARATH1.808e-1245.12Transcription factor PIF3 OS=Arabidopsis thaliana ... [more]
PIF4_ARATH6.870e-1240.00Transcription factor PIF4 OS=Arabidopsis thaliana ... [more]
PIF5_ARATH1.530e-1141.38Transcription factor PIF5 OS=Arabidopsis thaliana ... [more]
BH119_ARATH1.530e-1149.21Transcription factor bHLH119 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC21001H11Rv AbsLeaSub1 Citrus clementina cDNA clone C21001H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308617 ID=CX308617; Name=CX308617; organism=Citrus clementina; type=EST; length=322bp
ACGGCTGTATTCTCTTGTAGCTTGAGAACCAAATGGCATGCCCGCAGTAT
CAAATGTTTGTTGAGTAAAATCTTTAGGAGGAAATACCTCAATGCCAGGG
TTCATTCTTGTATTGACTGCTTCAAGCTTCATTGACAGAAACTCAACCTG
CCGCTGTAGCGATTGGATGTAGTTAATTATCTCATCCAGGACCAATGCTT
TGCCGATGACCTTGTTACAACCAGGAACCAAGTCCTGGAGAATTTTCATC
CTTTCGCTTATCTTTTCTCTCCTAGCTCTTTCTGCTAAACTGTGGCTATC
AGTAGCTTGGCCCCTTCTTGCT
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