CX308633

Overview
NameCX308633
Unique NameCX308633
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length251
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11755 contig Ccv1_Contig11755:335..585. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308633 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.260e-18
Identity = 42/78 (53.85%), Postives = 57/78 (73.08%), Query Frame = -1
Query:   18 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLF 251
            +KL+L+F   YP   PTV+FV+  FHPN+ + G+ICLDIL+++WS +YDV  IL S+QSLL +PN  SP N  AA L+
Sbjct:   79 YKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELW 156          
BLAST of CX308633 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.260e-18
Identity = 41/78 (52.56%), Postives = 58/78 (74.36%), Query Frame = -1
Query:   18 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLF 251
            +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN +SP N+ AA L+
Sbjct:   79 YKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW 156          
BLAST of CX308633 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.260e-18
Identity = 41/78 (52.56%), Postives = 58/78 (74.36%), Query Frame = -1
Query:   18 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLF 251
            +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN +SP N+ AA L+
Sbjct:   79 YKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW 156          
BLAST of CX308633 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.260e-18
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            ++L+L F   YP   P V+F++  FHPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN  SP N++AA ++++ K
Sbjct:   81 YRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMWNDQK 162          
BLAST of CX308633 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.260e-18
Identity = 41/78 (52.56%), Postives = 58/78 (74.36%), Query Frame = -1
Query:   18 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLF 251
            +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN +SP N+ AA L+
Sbjct:   79 YKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW 156          
BLAST of CX308633 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.260e-18
Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F +T+ F  DYP KPP V F +++FHPN+ ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A ++  ++
Sbjct:   50 FLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR 131          
BLAST of CX308633 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.260e-18
Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F L + F  DYP KPP V F +R++HPNI ++GSICLDIL++QWSP   ++ +L SI S+L DPNP+ P   E A ++  ++
Sbjct:   50 FFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDR 131          
BLAST of CX308633 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.646e-18
Identity = 41/78 (52.56%), Postives = 57/78 (73.08%), Query Frame = -1
Query:   18 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLF 251
            +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+ +WS +YDV  IL SIQSLL +PN +SP N+ AA L+
Sbjct:   79 YKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW 156          
BLAST of CX308633 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.646e-18
Identity = 41/82 (50.00%), Postives = 57/82 (69.51%), Query Frame = -1
Query:    6 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLFSENK 251
            F +T+ F  DYP KPP V F ++++HPNI ++GSICLDIL+ QWSP   V+ +L SI SLL DPNP+ P   E A ++  ++
Sbjct:   50 FLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDR 131          
BLAST of CX308633 vs. ExPASy Swiss-Prot
Match: UBC11_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC11 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.646e-18
Identity = 40/78 (51.28%), Postives = 59/78 (75.64%), Query Frame = -1
Query:   18 FKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARLF 251
            FK++L+F ++YP  PP ++F+S M+HPN+   G+ICLDIL+ +WS +Y+V  IL S+QSLL +PN  SP N+ AA L+
Sbjct:   58 FKVSLKFPQNYPFHPPMIKFLSPMWHPNVDKSGNICLDILKEKWSAVYNVETILLSLQSLLGEPNNRSPLNAVAAELW 135          
The following BLAST results are available for this feature:
BLAST of CX308633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
UBE2C_XENLA1.260e-1853.85Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBE2C_MOUSE1.260e-1852.56Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UBE2C_MACFA1.260e-1852.56Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_DROME1.260e-1848.78Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UBE2C_BOVIN1.260e-1852.56Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBC28_ARATH1.260e-1848.78Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC1_COLGL1.260e-1848.78Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBE2C_HUMAN1.646e-1852.56Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBC30_ARATH1.646e-1850.00Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC11_YEAST1.646e-1851.28Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionC21002B05Rv AbsLeaSub1 Citrus clementina cDNA clone C21002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308633 ID=CX308633; Name=CX308633; organism=Citrus clementina; type=EST; length=251bp
TCTCTCTTATTCTCACTGAACAGCCGAGCTGCTTCAGAGTTTGCAGGAGA
GTTTGGATTTGGATCACAAAGCAGAGACTGAATAGAGGTCAGTATAGCTG
CAACATCATATATAGGACTCCACTGATTTTGTAAAATATCCAAACAAATA
CTTCCATCTGCATAGATATTTGGATGAAACATCCGTGAGACGAAACGAAC
TGTTGGGGGTTTATTTGGATAATCCTCTGTGAATTGTAGAGTCAACTTGA
A
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