CX308639

Overview
NameCX308639
Unique NameCX308639
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308639 vs. ExPASy Swiss-Prot
Match: SNAA_RAT (Alpha-soluble NSF attachment protein OS=Rattus norvegicus GN=Napa PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 7.115e-32
Identity = 76/208 (36.54%), Postives = 132/208 (63.46%), Query Frame = -1
Query:  123 NMKLLSLCDAATAIETSSN--------EAISA*NR-L*ICL*HGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERCQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTT 716
            +++L S  DAAT    + N        EAI+   R + I    GR ++AA+++  IAE+YE+E  ++E+ I  +E++AD ++ EE  +SAN+C  KVA YAA+LEQY K+I+IYE++   ++++ LLKY  K +   A +C  C  D++    A+++ +++ P FS +RE +L+  +  + +E+++  +T+ VKE+DS++ LD W TT
Sbjct:   72 HLQLQSKHDAATCFVDAGNAFKKADPQEAINCLMRAIEIYTDMGRFTIAAKHHISIAEIYETELVDVEKAIAHYEQSADYYKGEESNSSANKCLLKVAGYAAQLEQYQKAIDIYEQVGTSAMDSPLLKYSAKDYFFKAALCHFCI-DMLNAKLAVQKYEELFPAFSDSRECKLMKKLLEAHEEQNVDSYTESVKEYDSISRLDQWLTT 278          
BLAST of CX308639 vs. ExPASy Swiss-Prot
Match: SNAB_RAT (Beta-soluble NSF attachment protein OS=Rattus norvegicus GN=Napb PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.292e-32
Identity = 82/208 (39.42%), Postives = 131/208 (62.98%), Query Frame = -1
Query:  123 NMKLLSLCDAATAIETSSN--------EAISA*NR-L*ICL*HGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERCQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTT 716
            +M+L S  D+AT+   + N        EAI+  N  + I    GR ++AA+++  IAE+YE+E  +IE+ I  +E++AD ++ EE + SAN+C  KVA YAA+LEQY K+IEIYE++   +++N LLKY  K +   A +C     ++ A   ALE+ ++M P F+ +RE +LL  +  + +E++   +T+ VKEFDS++ LD W TT
Sbjct:   72 HMQLQSKHDSATSFVDAGNAYKKADPQEAINCLNAAIDIYTDMGRFTIAAKHHITIAEIYETELVDIEKAIAHYEQSADYYKGEE-SNSANKCLLKVAAYAAQLEQYQKAIEIYEQVGANTMDNPLLKYSAKDYFFKAALCHFIVDELNA-KLALEKYEEMFPAFTDSRECKLLKKLLEAHEEQNSEAYTEAVKEFDSISRLDQWLTT 277          
BLAST of CX308639 vs. ExPASy Swiss-Prot
Match: SNAA_BOVIN (Alpha-soluble NSF attachment protein OS=Bos taurus GN=NAPA PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.585e-31
Identity = 76/208 (36.54%), Postives = 131/208 (62.98%), Query Frame = -1
Query:  123 NMKLLSLCDAATAIETSSN--------EAISA*NR-L*ICL*HGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERCQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTT 716
            +++L S  DAAT    + N        EAI+   R + I    GR ++AA+++  IAE+YE+E  +IE+ I  +E++AD ++ EE  +SAN+C  KVA YAA+LEQY K+I+IYE++   ++++ LLKY  K +   A +C  C  D++    A+++ +++ P FS +RE + +  +  + +E+++  +T+ VKE+DS++ LD W TT
Sbjct:   72 HLQLQSKHDAATCFVDAGNAFKKADPQEAINCLMRAIEIYTDMGRFTIAAKHHISIAEIYETELVDIEKAIAHYEQSADYYKGEESNSSANKCLLKVAGYAAQLEQYQKAIDIYEQVGTNAMDSPLLKYSAKDYFFKAALCHFCI-DMLNAKLAVQKYEELFPAFSDSRECKRIKKLLEAHEEQNVDSYTEAVKEYDSISRLDQWLTT 278          
BLAST of CX308639 vs. ExPASy Swiss-Prot
Match: SNAA_HUMAN (Alpha-soluble NSF attachment protein OS=Homo sapiens GN=NAPA PE=1 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 2.070e-31
Identity = 77/208 (37.02%), Postives = 131/208 (62.98%), Query Frame = -1
Query:  123 NMKLLSLCDAATAIETSSN--------EAISA*NR-L*ICL*HGRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERCQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTT 716
            +++L S  DAAT    + N        EAI+   R + I    GR ++AA+++  IAE+YE+E  +IE+ I  +E++AD ++ EE  +SAN+C  KVA YAA LEQY K+I+IYE++   ++++ LLKY  K +   A +C  C  D++    A+++ +++ P FS +RE +L+  +  + +E+++  +T+ VKE+DS++ LD W TT
Sbjct:   72 HLQLQSKHDAATCFVDAGNAFKKADPQEAINCLMRAIEIYTDMGRFTIAAKHHISIAEIYETELVDIEKAIAHYEQSADYYKGEESNSSANKCLLKVAGYAALLEQYQKAIDIYEQVGTNAMDSPLLKYSAKDYFFKAALCHFCI-DMLNAKLAVQKYEELFPAFSDSRECKLMKKLLEAHEEQNVDSYTESVKEYDSISRLDQWLTT 278          
BLAST of CX308639 vs. ExPASy Swiss-Prot
Match: SEC17_COPC7 (Vesicular-fusion protein SEC17 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=SEC17 PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.040e-27
Identity = 63/164 (38.41%), Postives = 94/164 (57.32%), Query Frame = -1
Query:  126 GRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERCQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKT 614
            GR   AA   KEIA++Y  E H++ +    F +A D +  E+ T +ANQC +  A   AELEQ+ ++I +YE +A  SL +NL KY VK + L + +C +  GD+V      ++    D TF GTRE++    +  ++D  D+  +T  V EFD +T LD WKT
Sbjct:  109 GRFRQAADREKEIAQIYLQETHDLSRACESFLRAGDWYAEEDATATANQCYKDAADLYAELEQFPQAITLYERVADHSLTSNLTKYSVKEYWLKSLLCTVALGDIVTARRNAQKYIGQDNTFVGTREFKFADALMEAVDAGDVGAYTAAVVEFDRITKLDNWKT 272          
BLAST of CX308639 vs. ExPASy Swiss-Prot
Match: SEC17_SCHPO (Probable vesicular-fusion protein sec17 homolog OS=Schizosaccharomyces pombe GN=sec17 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.005e-26
Identity = 58/165 (35.15%), Postives = 96/165 (58.18%), Query Frame = -1
Query:  123 GRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERCQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTT 614
            G    AA Y  ++ +++E E  + +  +  +E A + + +++    AN+   K A  A    +Y  +I  +E++AR S+ NNLLK+ VK +LL AG+C +  GD +A   ALE   ++DP+F+ TREY+LL D+  +++  D   F D V  +D ++ LD WKTT
Sbjct:  108 GNFRRAANYKMDLGDIFEQELQDTKAALGAYEDAGEWYSSDQADALANKAYLKAADLAGLCGEYSLAIRKFEQVARASVQNNLLKWSVKDYLLKAGLCYMANGDEIATRRALEHFLEIDPSFASTREYQLLKDLQDTIEASDANMFADKVFTYDQLSKLDSWKTT 272          
BLAST of CX308639 vs. ExPASy Swiss-Prot
Match: SEC17_NEUCR (Probable vesicular-fusion protein sec17 homolog OS=Neurospora crassa GN=B1D1.150 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.037e-23
Identity = 56/163 (34.36%), Postives = 91/163 (55.83%), Query Frame = -1
Query:  129 GRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERCQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWK 614
            G    AA + +  AE+YE+E  N  + I  +  AA+ ++N+     AN+   KVA  +A    +  +IE +E++A  SL NNL++Y VK + L AG+C L   D+V     + +  + DP+F+G REY+LL D+  +    ++  F D +  +D M+ LD WK
Sbjct:  111 GNFRRAASHKENQAEVYENELQNKPEAIKAYTTAAEWYENDGAVALANKLWLKVADLSALAGDFFAAIEKFEKVAEASLGNNLMRYSVKEYFLKAGLCSLATKDMVTAQRNITKYAEKDPSFTGQREYQLLVDLLEAASNNNLEMFQDKLAAYDKMSRLDDWK 273          
BLAST of CX308639 vs. ExPASy Swiss-Prot
Match: SEC17_YEAST (Alpha-soluble NSF attachment protein OS=Saccharomyces cerevisiae GN=SEC17 PE=1 SV=4)

HSP 1 Score: 95.1301 bits (235), Expect = 4.049e-19
Identity = 54/183 (29.51%), Postives = 93/183 (50.82%), Query Frame = -1
Query:  123 SSNEAISA*NRL*ICL*HGRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERCQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTT 668
            S N   S  N + I    G+    A +  E+ E+ E++ H+  + I  +E A + +  ++    +N+C  K A   A   QY ++ +IY ++ + S+ N L ++ +K + L  G+CQL   D VA    L+  Q  DP F+ +RE   L  +  +++E D  + ++  KEFD+   LD WK T
Sbjct:   93 SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275          
BLAST of CX308639 vs. ExPASy Swiss-Prot
Match: SEC17_PICPG (Vesicular-fusion protein SEC17 OS=Pichia pastoris (strain GS115) GN=SEC17 PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 2.010e-18
Identity = 52/165 (31.52%), Postives = 88/165 (53.33%), Query Frame = -1
Query:  129 GRLSMAARYYKEIAELYESEH-NIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAA--ELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERCQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWK 614
            G+    A +  E+AELYE++  + +  I+ +E+A + ++ +     AN+C  K A  +   E++ + K+ E YE IA++SLNN+L K+ +K +   A +C+L   D  + +  LER    DPTF  TREY     +   + E D         E+D ++ LD +K
Sbjct:  110 GQFRRGANFKAELAELYETKMADPKHAILAYEEAGEWYRGDSAEALANKCYVKAADLSCSDEVQDFLKAAESYERIAKESLNNSLAKWSLKDYFFKAILCRLALNDYPSASALLERFVSWDPTFEKTREYEFALKLVDGLKEGDPDIIASASHEYDQISRLDNFK 274          
BLAST of CX308639 vs. ExPASy Swiss-Prot
Match: SEC17_ASHGO (Vesicular-fusion protein SEC17 OS=Ashbya gossypii GN=SEC17 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.592e-15
Identity = 48/165 (29.09%), Postives = 84/165 (50.91%), Query Frame = -1
Query:  123 GRLSMAARYYKEIAELYESE-HNIEQTIVFFEKAADMFQNEEVTTSANQCKQKVAQYAAELEQYHKSIEIYEEIARQSLNNNLLKYGVKGHLLNAGICQLCKGDVVAITNALERCQDMDPTFSGTREYRLLSDIAASMDEEDIAKFTDVVKEFDSMTPLDPWKTT 614
            G+    A +  E+AE+ E++  +  +    +E A D +  ++    +N+   K A   A  E+Y  + E+Y +I   S+ N L ++ ++ + L   +C L   D VA    L+     D +F G+RE+ LL+ I   + + D+  F++ V EFD  + LD WKTT
Sbjct:  110 GQFRRGAYFKFELAEVQETDLQDYGRARENYELAGDWYMQDQALALSNKAYIKCADLNALDEKYLAAAELYRKIISNSVGNRLSQWSLRDYYLKLCLCFLAASDTVAAEKTLQEALQEDSSFHGSREHDLLAAIIEDVKQGDVEAFSNHVFEFDKFSKLDKWKTT 274          
The following BLAST results are available for this feature:
BLAST of CX308639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
SNAA_RAT7.115e-3236.54Alpha-soluble NSF attachment protein OS=Rattus nor... [more]
SNAB_RAT9.292e-3239.42Beta-soluble NSF attachment protein OS=Rattus norv... [more]
SNAA_BOVIN1.585e-3136.54Alpha-soluble NSF attachment protein OS=Bos taurus... [more]
SNAA_HUMAN2.070e-3137.02Alpha-soluble NSF attachment protein OS=Homo sapie... [more]
SEC17_COPC74.040e-2738.41Vesicular-fusion protein SEC17 OS=Coprinopsis cine... [more]
SEC17_SCHPO2.005e-2635.15Probable vesicular-fusion protein sec17 homolog OS... [more]
SEC17_NEUCR6.037e-2334.36Probable vesicular-fusion protein sec17 homolog OS... [more]
SEC17_YEAST4.049e-1929.51Alpha-soluble NSF attachment protein OS=Saccharomy... [more]
SEC17_PICPG2.010e-1831.52Vesicular-fusion protein SEC17 OS=Pichia pastoris ... [more]
SEC17_ASHGO1.592e-1529.09Vesicular-fusion protein SEC17 OS=Ashbya gossypii ... [more]

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Properties
Property NameValue
Genbank descriptionC21002B12Rv AbsLeaSub1 Citrus clementina cDNA clone C21002B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308639 ID=CX308639; Name=CX308639; organism=Citrus clementina; type=EST; length=731bp
AATCAATCCAGAGGAAAATATAAAATCAAAGCACATTAATGTATGTATAT
ATGTCAAATTTAGGTAAGATCGTCCTCCTCCAACTCTTTGGCCTTCAGCT
TTTCCTTCACTCTCAACAGAAGGGTCGTCTTCCATGGATCCAGAGGTGTC
ATGCTATCAAACTCCTTAACAACATCTGTAAACTTCGCAATGTCTTCCTC
ATCCATGGACGCAGCAATGTCCGACAATAGTCTGTATTCACGTGTTCCAG
AAAAGGTAGGATCCATGTCCTGGCATCGCTCCAATGCGTTGGTAATAGCA
ACAACATCACCCTTGCAAAGTTGGCATATGCCAGCATTAAGAAGATGTCC
TTTCACTCCATATTTCAACAAGTTGTTGTTGAGAGACTGCCTAGCAATCT
CTTCATAAATCTCAATTGACTTGTGATATTGTTCCAATTCAGCAGCATAT
TGTGCAACTTTCTGCTTGCACTGGTTAGCAGAAGTTGTTACTTCTTCATT
TTGGAACATATCAGCTGCCTTCTCAAAGAAAACAATAGTCTGTTCAATGT
TGTGCTCAGATTCATACAGCTCAGCAATTTCCTTATAATATCTTGCAGCC
ATACTGAGCCTTCCATGTCACAAACATATTTACAGCCTGTTCTAAGCAGA
TATGGCCTCATTTGAAGATGTTTCTATAGCAGTGGCAGCATCACATAAGC
TGAGCAGCTTCATGTTGCTTCACCGCGTACT
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