CX308644

Overview
NameCX308644
Unique NameCX308644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK22_ARATH (Cysteine-rich receptor-like protein kinase 22 OS=Arabidopsis thaliana GN=CRK22 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.777e-14
Identity = 42/115 (36.52%), Postives = 66/115 (57.39%), Query Frame = 3
Query:  150 KSMWLEGFKRSNVVSASGIPEYSYKDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            KS+    F+  + VS +   +Y +K ++ AT  F+    +G+G FG VYK + S G  VAVK L+  S Q  K+F+ E +L+ ++ HRNL  L+G+C +     L+Y F+   SL
Sbjct:  320 KSLQRTEFESDSDVSTTNSLQYEFKTIEAATNKFSKSNKLGEGRFGEVYKGKFSNGTEVAVKRLSKVSGQDTKKFRNEAVLVSKIQHRNLARLLGFCLQGDGKFLIYEFVLNKSL 434          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK13_ARATH (Cysteine-rich receptor-like protein kinase 13 OS=Arabidopsis thaliana GN=CRK13 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.777e-14
Identity = 35/93 (37.63%), Postives = 62/93 (66.67%), Query Frame = 3
Query:  210 EYSYKDLQKATCNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            +Y +K ++ AT NF+  +G G  G V+K ++  G+ +AVK L+  ++Q +KEF+ EV+L+ +L HRNLV L+G+  +  + ++VY ++   SL
Sbjct:  347 QYKFKTIETATNNFSERLGHGGSGHVFKGRLPDGKEIAVKRLSEKTEQSKKEFKNEVVLVAKLQHRNLVRLLGFSVKGEEKIIVYEYLPNRSL 439          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y2239_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g23950 OS=Arabidopsis thaliana GN=At2g23950 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.320e-14
Identity = 38/110 (34.55%), Postives = 65/110 (59.09%), Query Frame = 3
Query:  174 KRSNVVSASGIPEYSYKDLQKATCNFTT--LIGQGAFGPVYKAQMSTGETVAVKVLA-TDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLAS 494
            +   ++    +  +++++L  AT  F++  ++G G FG VY+ +   G  VAVK L   +   G  +F+TE+ ++    HRNL+ L+GYCA   + +LVY +MS GS+AS
Sbjct:  274 QEEGLLGLGNLRSFTFRELHVATDGFSSKSILGAGGFGNVYRGKFGDGTVVAVKRLKDVNGTSGNSQFRTELEMISLAVHRNLLRLIGYCASSSERLLVYPYMSNGSVAS 383          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.320e-14
Identity = 41/100 (41.00%), Postives = 65/100 (65.00%), Query Frame = 3
Query:  204 IPEYSYKDLQKATCNFTT--LIGQGAFGPVYKAQMSTGETVAVKVLATD-SKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLAS 494
            +  ++ ++L  AT NF+   ++G+G FG VYK +++ G  VAVK L  + +K GE +FQTEV ++    HRNL+ L G+C    + +LVY +M+ GS+AS
Sbjct:  279 LKRFTLRELLVATDNFSNKNVLGRGGFGKVYKGRLADGNLVAVKRLKEERTKGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVAS 378          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK7_ARATH (Cysteine-rich receptor-like protein kinase 7 OS=Arabidopsis thaliana GN=CRK7 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.320e-14
Identity = 39/95 (41.05%), Postives = 61/95 (64.21%), Query Frame = 3
Query:  210 EYSYKDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            +  Y+ +Q AT +F+    IG+G FG VYK   S G  VAVK L+  S+QG+ EF+ EV+++  L H+NLV ++G+  E+ + +LVY ++   SL
Sbjct:  323 QLDYRAIQAATNDFSENNKIGRGGFGDVYKGTFSNGTEVAVKRLSKTSEQGDTEFKNEVVVVANLRHKNLVRILGFSIEREERILVYEYVENKSL 417          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK14_ARATH (Cysteine-rich receptor-like protein kinase 14 OS=Arabidopsis thaliana GN=CRK14 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.320e-14
Identity = 39/95 (41.05%), Postives = 64/95 (67.37%), Query Frame = 3
Query:  210 EYSYKDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            ++ +K ++ AT  F+   +IG+G FG V+   ++ G  VA+K L+  S+QG +EF+ EV+++ +LHHRNLV L+G+C E  + +LVY F+   SL
Sbjct:  324 QFDFKAIEDATNKFSESNIIGRGGFGEVFMGVLN-GTEVAIKRLSKASRQGAREFKNEVVVVAKLHHRNLVKLLGFCLEGEEKILVYEFVPNKSL 417          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: SRK6_BRAOE (Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.031e-14
Identity = 44/108 (40.74%), Postives = 64/108 (59.26%), Query Frame = 3
Query:  210 EYSYKDLQ----------KATCNFTTL--IGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            EY +++L+          KAT NF++   +GQG FG VYK ++  G+ +AVK L+  S QG  EF  EV L+ RL H NLV ++G C E  + ML+Y ++   SL S+
Sbjct:  505 EYKFEELELPLIEMETVVKATENFSSCNKLGQGGFGIVYKGRLLDGKEIAVKRLSKTSVQGTDEFMNEVTLIARLQHINLVQVLGCCIEGDEKMLIYEYLENLSLDSY 612          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.031e-14
Identity = 41/100 (41.00%), Postives = 65/100 (65.00%), Query Frame = 3
Query:  204 IPEYSYKDLQKATCNFTT--LIGQGAFGPVYKAQMSTGETVAVKVLATD-SKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLAS 494
            +  +S ++LQ AT +F+   ++G+G FG VYK +++ G  VAVK L  + +  GE +FQTEV ++    HRNL+ L G+C    + +LVY +M+ GS+AS
Sbjct:  290 LKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVAS 389          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: RKF1_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RFK1 OS=Arabidopsis thaliana GN=RKF1 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.031e-14
Identity = 39/96 (40.62%), Postives = 60/96 (62.50%), Query Frame = 3
Query:  213 YSYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLAS 494
            ++ + ++ AT +F  T  IG+G FG V+K  ++ G  VAVK L++ S+QG +EF  E+  +  L H NLV L G+C E+ Q +L Y +M   SL+S
Sbjct:  669 FTLRQIKFATDDFNPTNKIGEGGFGAVFKGVLADGRVVAVKQLSSKSRQGNREFLNEIGAISCLQHPNLVKLHGFCVERAQLLLAYEYMENNSLSS 764          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: KPRO_MAIZE (Putative receptor protein kinase ZmPK1 OS=Zea mays GN=PK1 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.031e-14
Identity = 40/99 (40.40%), Postives = 61/99 (61.62%), Query Frame = 3
Query:  198 SGIPEYSYKDLQKATCNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLAS 494
            S    YSY++L KAT  F   +G+G  G VYK  +     VAVK L  + +QG++ FQ E+ ++GR++H NLV + G+C+E    +LV  ++  GSLA+
Sbjct:  519 SNFRRYSYRELVKATRKFKVELGRGESGTVYKGVLEDDRHVAVKKLE-NVRQGKEVFQAELSVIGRINHMNLVRIWGFCSEGSHRLLVSEYVENGSLAN 616          
The following BLAST results are available for this feature:
BLAST of CX308644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CRK22_ARATH1.777e-1436.52Cysteine-rich receptor-like protein kinase 22 OS=A... [more]
CRK13_ARATH1.777e-1437.63Cysteine-rich receptor-like protein kinase 13 OS=A... [more]
Y2239_ARATH2.320e-1434.55Probable LRR receptor-like serine/threonine-protei... [more]
SERK4_ARATH2.320e-1441.00Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
CRK7_ARATH2.320e-1441.05Cysteine-rich receptor-like protein kinase 7 OS=Ar... [more]
CRK14_ARATH2.320e-1441.05Cysteine-rich receptor-like protein kinase 14 OS=A... [more]
SRK6_BRAOE3.031e-1440.74Putative serine/threonine-protein kinase receptor ... [more]
SERK2_ARATH3.031e-1441.00Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
RKF1_ARATH3.031e-1440.63Probable LRR receptor-like serine/threonine-protei... [more]
KPRO_MAIZE3.031e-1440.40Putative receptor protein kinase ZmPK1 OS=Zea mays... [more]

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Properties
Property NameValue
Genbank descriptionC21002C05Rv AbsLeaSub1 Citrus clementina cDNA clone C21002C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308644 ID=CX308644; Name=CX308644; organism=Citrus clementina; type=EST; length=498bp
ATAGGAAGCGATCCCAGATAGGGAATAGTAGTTCTAGGAGGGCGGCGACA
CTTCCTATTCGTGCAAACGGTGTTGATTCTTGTAGCATATTATCTGATTC
TACTGTTGGTCCGGAGTCACCTGTGAAATCTGGATGGAATGGCAATGGCA
AGTCCATGTGGCTTGAAGGTTTTAAAAGGAGCAATGTGGTGTCAGCATCT
GGAATACCCGAGTATTCTTACAAGGATTTGCAGAAAGCTACATGTAATTT
TACGACATTAATAGGACAAGGTGCATTTGGCCCAGTATACAAAGCTCAGA
TGTCAACTGGTGAAACTGTTGCTGTTAAAGTGCTTGCAACTGATTCTAAG
CAAGGGGAGAAGGAATTCCAAACAGAGGTCATGTTATTAGGACGATTGCA
TCATAGGAACTTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGCCAAC
ATATGCTTGTGTATGTCTTCATGAGTAAAGGCAGCCTGGCTTCTCATT
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