CX308644

Overview
NameCX308644
Unique NameCX308644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y1061_ARATH (Probably inactive leucine-rich repeat receptor-like protein kinase At1g50610 OS=Arabidopsis thaliana GN=At1g50610 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.350e-11
Identity = 37/98 (37.76%), Postives = 55/98 (56.12%), Query Frame = 3
Query:  204 IPEYSYKDLQKATCNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            I  +  +DL +A+     ++G G FG  YKA +S+G+T+ VK     +  G  EF   +  LGRL+H N++ LV Y   + + +LV  FM   SLASH
Sbjct:  365 IQRFDLQDLLRASAE---VLGSGTFGASYKAAISSGQTLVVKRYKHMNNVGRDEFHEHMRRLGRLNHPNILPLVAYYYRREEKLLVTEFMPNSSLASH 459          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK3_ARATH (Cysteine-rich receptor-like protein kinase 3 OS=Arabidopsis thaliana GN=CRK3 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.350e-11
Identity = 37/94 (39.36%), Postives = 59/94 (62.77%), Query Frame = 3
Query:  213 YSYKDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            +SY++L++AT  F+    +GQG  G VYK  ++ G+TVAVK L  ++KQ    F  EV L+ ++ H+NLV L+G      + +LVY +++  SL
Sbjct:  311 FSYENLERATDYFSDKNKLGQGGSGSVYKGVLTNGKTVAVKRLFFNTKQWVDHFFNEVNLISQVDHKNLVKLLGCSITGPESLLVYEYIANQSL 404          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: RLK_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RLK OS=Arabidopsis thaliana GN=RLK PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.987e-11
Identity = 36/94 (38.30%), Postives = 54/94 (57.45%), Query Frame = 3
Query:  210 EYSYKDLQKATCNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLA 491
            ++  +DL KA+     ++G G FG  YKA +S+G+ + VK     +  G  EFQ  +  LGRL H NL+++V Y   K + +LV  F  +GSLA
Sbjct:  349 KFDLQDLLKASAE---ILGSGCFGASYKAVLSSGQMMVVKRFKQMNNAGRDEFQEHMKRLGRLMHHNLLSIVAYYYRKEEKLLVCDFAERGSLA 439          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: WAKLI_ARATH (Wall-associated receptor kinase-like 22 OS=Arabidopsis thaliana GN=WAKL22 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.125e-11
Identity = 38/94 (40.43%), Postives = 54/94 (57.45%), Query Frame = 3
Query:  213 YSYKDLQKATCNFTT--LIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            +S K+L+KAT NF    ++GQG  G VYK  +  G  VAVK      +   +EF  EV +L +++HRN+V L+G C E    +LVY  +  G L
Sbjct:  409 FSSKELEKATDNFNMNRVLGQGGQGTVYKGMLVDGRIVAVKRSKVLDEDKVEEFINEVGVLSQINHRNIVKLMGCCLETEVPILVYEHIPNGDL 502          
The following BLAST results are available for this feature:
BLAST of CX308644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
Y1061_ARATH5.350e-1137.76Probably inactive leucine-rich repeat receptor-lik... [more]
CRK3_ARATH5.350e-1139.36Cysteine-rich receptor-like protein kinase 3 OS=Ar... [more]
RLK_ARATH6.987e-1138.30Probable LRR receptor-like serine/threonine-protei... [more]
WAKLI_ARATH9.125e-1140.43Wall-associated receptor kinase-like 22 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionC21002C05Rv AbsLeaSub1 Citrus clementina cDNA clone C21002C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308644 ID=CX308644; Name=CX308644; organism=Citrus clementina; type=EST; length=498bp
ATAGGAAGCGATCCCAGATAGGGAATAGTAGTTCTAGGAGGGCGGCGACA
CTTCCTATTCGTGCAAACGGTGTTGATTCTTGTAGCATATTATCTGATTC
TACTGTTGGTCCGGAGTCACCTGTGAAATCTGGATGGAATGGCAATGGCA
AGTCCATGTGGCTTGAAGGTTTTAAAAGGAGCAATGTGGTGTCAGCATCT
GGAATACCCGAGTATTCTTACAAGGATTTGCAGAAAGCTACATGTAATTT
TACGACATTAATAGGACAAGGTGCATTTGGCCCAGTATACAAAGCTCAGA
TGTCAACTGGTGAAACTGTTGCTGTTAAAGTGCTTGCAACTGATTCTAAG
CAAGGGGAGAAGGAATTCCAAACAGAGGTCATGTTATTAGGACGATTGCA
TCATAGGAACTTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGCCAAC
ATATGCTTGTGTATGTCTTCATGAGTAAAGGCAGCCTGGCTTCTCATT
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