CX308644

Overview
NameCX308644
Unique NameCX308644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y4391_ARATH (Probable receptor-like protein kinase At4g39110 OS=Arabidopsis thaliana GN=At4g39110 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.707e-18
Identity = 51/114 (44.74%), Postives = 71/114 (62.28%), Query Frame = 3
Query:  168 GFKRSNVVSAS-GIPEY-SYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            G ++SN  +++ G+  Y S  +LQ+AT NF  + +IG G FG VY   +  G  VAVK     S+QG  EFQTE+ +L +L HR+LV+L+GYC E  + +LVY FMS G    H
Sbjct:  497 GSQKSNFYNSTLGLGRYFSLSELQEATKNFEASQIIGVGGFGNVYIGTLDDGTKVAVKRGNPQSEQGITEFQTEIQMLSKLRHRHLVSLIGYCDENSEMILVYEFMSNGPFRDH 610          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y2899_ARATH (Probable leucine-rich repeat receptor-like protein kinase At2g28990 OS=Arabidopsis thaliana GN=At2g28990 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.707e-18
Identity = 45/96 (46.88%), Postives = 65/96 (67.71%), Query Frame = 3
Query:  213 YSYKDLQKATCNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHM-LVYVFMSKGSLASH 497
            ++Y ++Q+ T NF   +G+G FG VY   ++  E VAVK+L+  S QG K F+ EV LL R+HH NLV+LVGYC ++G+H+ L+Y +M  G L  H
Sbjct:  567 FTYSEVQEMTNNFDKALGEGGFGVVYHGFVNVIEQVAVKLLSQSSSQGYKHFKAEVELLMRVHHINLVSLVGYC-DEGEHLALIYEYMPNGDLKQH 661          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y1756_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g07560 OS=Arabidopsis thaliana GN=At1g07560 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.707e-18
Identity = 45/95 (47.37%), Postives = 61/95 (64.21%), Query Frame = 3
Query:  213 YSYKDLQKATCNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            Y+Y ++   T  F  ++G+G FG VY   ++  E VAVK+L+  S QG KEF+TEV LL R++H NLV+LVGYC EK    L+Y +M  G L  H
Sbjct:  560 YTYAEVLAMTKKFERVLGKGGFGMVYHGYINGTEEVAVKLLSPSSAQGYKEFKTEVELLLRVYHTNLVSLVGYCDEKDHLALIYQYMVNGDLKKH 654          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y5182_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51820 OS=Arabidopsis thaliana GN=At1g51820 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.007e-17
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 3
Query:  213 YSYKDLQKATCNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            +SY  +   T NF  ++G+G FG VY   ++  E VAVK+L+  S QG K+F+ EV LL R+HH+NLV LVGYC E     L+Y +M+ G L  H
Sbjct:  568 FSYSQVVIMTNNFQRILGKGGFGMVYHGFVNGTEQVAVKILSHSSSQGYKQFKAEVELLLRVHHKNLVGLVGYCDEGDNLALIYEYMANGDLKEH 662          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y5181_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51810 OS=Arabidopsis thaliana GN=At1g51810 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.007e-17
Identity = 43/96 (44.79%), Postives = 63/96 (65.62%), Query Frame = 3
Query:  210 EYSYKDLQKATCNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            +++Y ++   T NF  ++G+G FG VY   ++  E VAVK+L+  S QG K+F+ EV LL R+HH+NLV LVGYC E  +  L+Y +M+ G L  H
Sbjct:  566 KFTYAEVLTMTNNFQKILGKGGFGIVYYGSVNGTEQVAVKMLSHSSAQGYKQFKAEVELLLRVHHKNLVGLVGYCEEGDKLALIYEYMANGDLDEH 661          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y2232_ARATH (Probable receptor-like protein kinase At2g23200 OS=Arabidopsis thaliana GN=At2g23200 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.007e-17
Identity = 47/95 (49.47%), Postives = 60/95 (63.16%), Query Frame = 3
Query:  219 YKDLQKATCNFTT--LIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            + D+  AT NF    LIG+G FG VYKA +  G   A+K   T S QG  EFQTE+ +L R+ HR+LV+L GYC E  + +LVY FM KG+L  H
Sbjct:  478 FTDILSATNNFDEQLLIGKGGFGYVYKAILPDGTKAAIKRGKTGSGQGILEFQTEIQVLSRIRHRHLVSLTGYCEENSEMILVYEFMEKGTLKEH 572          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y5596_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g59680 OS=Arabidopsis thaliana GN=At5g59680 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.315e-17
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 3
Query:  210 EYSYKDLQKATCNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            +++Y ++ K T NF  ++G+G FG V    ++  E VAVK+L+  S QG KEF+ EV LL R+HH NLV+LVGYC E     L+Y F+  G L  H
Sbjct:  569 KFTYSEVTKMTNNFGRVVGEGGFGVVCHGTVNGSEQVAVKLLSQSSTQGYKEFKAEVDLLLRVHHTNLVSLVGYCDEGDHLALIYEFVPNGDLRQH 664          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CX32_ARATH (Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.315e-17
Identity = 49/116 (42.24%), Postives = 73/116 (62.93%), Query Frame = 3
Query:  186 VVSASGIPEYSYKDLQKATCNFT--TLIGQGAFGPVYK----------AQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            ++ +  +  Y++ DL+ AT NF   +++GQG FG VY+          +++ +G  VA+K L ++S QG  E+++EV  LG L HRNLV L+GYC E  + +LVY FM KGSL SH
Sbjct:   65 LLESPNLKVYNFLDLKTATKNFKPDSMLGQGGFGKVYRGWVDATTLAPSRVGSGMIVAIKRLNSESVQGFAEWRSEVNFLGMLSHRNLVKLLGYCREDKELLLVYEFMPKGSLESH 180          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK4_ARATH (Cysteine-rich receptor-like protein kinase 4 OS=Arabidopsis thaliana GN=CRK4 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.315e-17
Identity = 45/107 (42.06%), Postives = 69/107 (64.49%), Query Frame = 3
Query:  174 KRSNVVSASGIPEYSYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            + S+ ++ +G  ++ +K ++ AT  F  T  +GQG FG VYK    +G  VAVK L+  S QGE+EF  EV+++ +L HRNLV L+G+C E+ + +LVY F+   SL
Sbjct:  326 EESDDITTAGSLQFDFKAIEAATNKFCETNKLGQGGFGEVYKGIFPSGVQVAVKRLSKTSGQGEREFANEVIVVAKLQHRNLVRLLGFCLERDERILVYEFVPNKSL 432          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: ACR4_ARATH (Serine/threonine-protein kinase-like protein ACR4 OS=Arabidopsis thaliana GN=ACR4 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.315e-17
Identity = 43/99 (43.43%), Postives = 71/99 (71.72%), Query Frame = 3
Query:  213 YSYKDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVK--VLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            ++Y++L+KA   F   +++G+G+F  VYK  +  G TVAVK  ++++D ++   EF+TE+ LL RL+H +L++L+GYC E G+ +LVY FM+ GSL +H
Sbjct:  500 FTYEELEKAADGFKEESIVGKGSFSCVYKGVLRDGTTVAVKRAIMSSDKQKNSNEFRTELDLLSRLNHAHLLSLLGYCEECGERLLVYEFMAHGSLHNH 598          
The following BLAST results are available for this feature:
BLAST of CX308644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
Y4391_ARATH7.707e-1844.74Probable receptor-like protein kinase At4g39110 OS... [more]
Y2899_ARATH7.707e-1846.88Probable leucine-rich repeat receptor-like protein... [more]
Y1756_ARATH7.707e-1847.37Probable LRR receptor-like serine/threonine-protei... [more]
Y5182_ARATH1.007e-1746.32Probable LRR receptor-like serine/threonine-protei... [more]
Y5181_ARATH1.007e-1744.79Probable LRR receptor-like serine/threonine-protei... [more]
Y2232_ARATH1.007e-1749.47Probable receptor-like protein kinase At2g23200 OS... [more]
Y5596_ARATH1.315e-1745.83Probable LRR receptor-like serine/threonine-protei... [more]
CX32_ARATH1.315e-1742.24Probable serine/threonine-protein kinase Cx32, chl... [more]
CRK4_ARATH1.315e-1742.06Cysteine-rich receptor-like protein kinase 4 OS=Ar... [more]
ACR4_ARATH1.315e-1743.43Serine/threonine-protein kinase-like protein ACR4 ... [more]

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Properties
Property NameValue
Genbank descriptionC21002C05Rv AbsLeaSub1 Citrus clementina cDNA clone C21002C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308644 ID=CX308644; Name=CX308644; organism=Citrus clementina; type=EST; length=498bp
ATAGGAAGCGATCCCAGATAGGGAATAGTAGTTCTAGGAGGGCGGCGACA
CTTCCTATTCGTGCAAACGGTGTTGATTCTTGTAGCATATTATCTGATTC
TACTGTTGGTCCGGAGTCACCTGTGAAATCTGGATGGAATGGCAATGGCA
AGTCCATGTGGCTTGAAGGTTTTAAAAGGAGCAATGTGGTGTCAGCATCT
GGAATACCCGAGTATTCTTACAAGGATTTGCAGAAAGCTACATGTAATTT
TACGACATTAATAGGACAAGGTGCATTTGGCCCAGTATACAAAGCTCAGA
TGTCAACTGGTGAAACTGTTGCTGTTAAAGTGCTTGCAACTGATTCTAAG
CAAGGGGAGAAGGAATTCCAAACAGAGGTCATGTTATTAGGACGATTGCA
TCATAGGAACTTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGCCAAC
ATATGCTTGTGTATGTCTTCATGAGTAAAGGCAGCCTGGCTTCTCATT
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