CX308644

Overview
NameCX308644
Unique NameCX308644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: SIRK_ARATH (Senescence-induced receptor-like serine/threonine-protein kinase OS=Arabidopsis thaliana GN=SIRK PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.524e-17
Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = 3
Query:  213 YSYKDLQKATCNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            + Y ++   T NF  +IG+G FG VY   ++ GE VAVKVL+ +S QG KEF+ EV LL R+HH NL +LVGYC E    +L+Y +M+  +L  +
Sbjct:  564 FKYSEVVNITNNFERVIGKGGFGKVYHGVIN-GEQVAVKVLSEESAQGYKEFRAEVDLLMRVHHTNLTSLVGYCNEINHMVLIYEYMANENLGDY 657          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y5487_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g48740 OS=Arabidopsis thaliana GN=At5g48740 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.521e-17
Identity = 41/95 (43.16%), Postives = 64/95 (67.37%), Query Frame = 3
Query:  213 YSYKDLQKATCNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            +S+K+++ AT NF  +IG+G+FG VY+ ++  G+ VAVKV    ++ G   F  EV LL ++ H+NLV+  G+C E  + +LVY ++S GSLA H
Sbjct:  596 FSHKEIKSATRNFKEVIGRGSFGAVYRGKLPDGKQVAVKVRFDRTQLGADSFINEVHLLSQIRHQNLVSFEGFCYEPKRQILVYEYLSGGSLADH 690          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y2289_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At2g28960 OS=Arabidopsis thaliana GN=At2g28960 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.521e-17
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 3
Query:  213 YSYKDLQKATCNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            ++Y +++  T NF  ++G+G FG VY   ++  + +AVK+L+  S QG KEF+ EV LL R+HH NLV+LVGYC E+    L+Y +   G L  H
Sbjct:  563 FTYSEVEALTDNFERVLGEGGFGVVYHGILNGTQPIAVKLLSQSSVQGYKEFKAEVELLLRVHHVNLVSLVGYCDEESNLALLYEYAPNGDLKQH 657          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK33_ARATH (Putative cysteine-rich receptor-like protein kinase 33 OS=Arabidopsis thaliana GN=CRK33 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.521e-17
Identity = 41/95 (43.16%), Postives = 61/95 (64.21%), Query Frame = 3
Query:  210 EYSYKDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            +Y  K ++ ATC F+   ++GQG FG V+K  +  G  +AVK L+ +S QG +EFQ E  L+ +L HRNLV ++G+C E  + +LVY F+   SL
Sbjct:  308 QYDLKTIEAATCTFSKCNMLGQGGFGEVFKGVLQDGSEIAVKRLSKESAQGVQEFQNETSLVAKLQHRNLVGVLGFCMEGEEKILVYEFVPNKSL 402          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK25_ARATH (Cysteine-rich receptor-like protein kinase 25 OS=Arabidopsis thaliana GN=CRK25 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.521e-17
Identity = 50/128 (39.06%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  147 GKSMWLEGFKRSNVVSAS-------GIP-----EYSYKDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            G   WL   +R+N +SA        GI      ++ +  ++ AT  F+    +G G FG VYK Q+ TGETVA+K L+  S QG +EF+ EV ++ +L HRNL  L+GYC +  + +LVY F+   SL
Sbjct:  301 GAMCWLLARRRNNKLSAETEDLDEDGITSTETLQFQFSAIEAATNKFSESNKLGHGGFGEVYKGQLITGETVAIKRLSQGSTQGAEEFKNEVDVVAKLQHRNLAKLLGYCLDGEEKILVYEFVPNKSL 428          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRI4_MAIZE (Putative receptor protein kinase CRINKLY4 OS=Zea mays GN=CR4 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.521e-17
Identity = 44/100 (44.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query:  210 EYSYKDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVK--VLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            E+SY++L++AT  F+  + +G+G+F  V+K  +  G  VAVK  + A+D K+  KEF  E+ LL RL+H +L+NL+GYC +  + +LVY FM+ GSL  H
Sbjct:  492 EFSYEELEQATGGFSEDSQVGKGSFSCVFKGILRDGTVVAVKRAIKASDVKKSSKEFHNELDLLSRLNHAHLLNLLGYCEDGSERLLVYEFMAHGSLYQH 591          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: ANX1_ARATH (Receptor-like protein kinase ANXUR1 OS=Arabidopsis thaliana GN=ANX1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.521e-17
Identity = 60/168 (35.71%), Postives = 91/168 (54.17%), Query Frame = 3
Query:    3 RKRSQIGNSSSRRAATLPIRANGVDSCSILSDSTVGPESPVKSGWNGNGKSMWLEGFKRSNVVSASGI-PEYSYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            +K+       S  ++ LPI  N          +T G +S + SG + NG  +       SN+  A+G+   +S  +++  T NF  + +IG G FG VYK  +     VAVK    +S+QG  EF+TE+ LL RL H++LV+L+GYC E G+  LVY +M+ G+L  H
Sbjct:  453 KKKQGYQGGDSHTSSWLPIYGNS---------TTSGTKSTI-SGKSNNGSHL-------SNL--AAGLCRRFSLPEIKHGTQNFDDSNVIGVGGFGKVYKGVIDGTTKVAVKKSNPNSEQGLNEFETEIELLSRLRHKHLVSLIGYCDEGGEMCLVYDYMAFGTLREH 601          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y5457_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At5g45780 OS=Arabidopsis thaliana GN=At5g45780 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.113e-16
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 3
Query:  204 IPEYSYKDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLA 491
            +  +S++++Q AT NF+   ++GQG FG VYK  +  G  VAVK L      GE +FQTEV ++G   HRNL+ L G+C    + MLVY +M  GS+A
Sbjct:  285 LKRFSFREIQTATSNFSPKNILGQGGFGMVYKGYLPNGTVVAVKRLKDPIYTGEVQFQTEVEMIGLAVHRNLLRLFGFCMTPEERMLVYPYMPNGSVA 382          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y5344_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53440 OS=Arabidopsis thaliana GN=At1g53440 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.113e-16
Identity = 43/95 (45.26%), Postives = 62/95 (65.26%), Query Frame = 3
Query:  213 YSYKDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLA 491
            ++ K +++AT NF     IG+G FGPVYK  ++ G T+AVK L++ SKQG +EF TE+ ++  L H NLV L G C E  + +LVY ++   SLA
Sbjct:  655 FTLKQIKRATNNFDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLA 749          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y5343_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.113e-16
Identity = 43/95 (45.26%), Postives = 62/95 (65.26%), Query Frame = 3
Query:  213 YSYKDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLA 491
            ++ K +++AT NF     IG+G FGPVYK  ++ G T+AVK L++ SKQG +EF TE+ ++  L H NLV L G C E  + +LVY ++   SLA
Sbjct:  657 FTLKQIKRATNNFDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLA 751          
The following BLAST results are available for this feature:
BLAST of CX308644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
SIRK_ARATH6.524e-1746.32Senescence-induced receptor-like serine/threonine-... [more]
Y5487_ARATH8.521e-1743.16Probable LRR receptor-like serine/threonine-protei... [more]
Y2289_ARATH8.521e-1743.16Probable LRR receptor-like serine/threonine-protei... [more]
CRK33_ARATH8.521e-1743.16Putative cysteine-rich receptor-like protein kinas... [more]
CRK25_ARATH8.521e-1739.06Cysteine-rich receptor-like protein kinase 25 OS=A... [more]
CRI4_MAIZE8.521e-1744.00Putative receptor protein kinase CRINKLY4 OS=Zea m... [more]
ANX1_ARATH8.521e-1735.71Receptor-like protein kinase ANXUR1 OS=Arabidopsis... [more]
Y5457_ARATH1.113e-1643.88Probable LRR receptor-like serine/threonine-protei... [more]
Y5344_ARATH1.113e-1645.26Probable LRR receptor-like serine/threonine-protei... [more]
Y5343_ARATH1.113e-1645.26Probable LRR receptor-like serine/threonine-protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21002C05Rv AbsLeaSub1 Citrus clementina cDNA clone C21002C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308644 ID=CX308644; Name=CX308644; organism=Citrus clementina; type=EST; length=498bp
ATAGGAAGCGATCCCAGATAGGGAATAGTAGTTCTAGGAGGGCGGCGACA
CTTCCTATTCGTGCAAACGGTGTTGATTCTTGTAGCATATTATCTGATTC
TACTGTTGGTCCGGAGTCACCTGTGAAATCTGGATGGAATGGCAATGGCA
AGTCCATGTGGCTTGAAGGTTTTAAAAGGAGCAATGTGGTGTCAGCATCT
GGAATACCCGAGTATTCTTACAAGGATTTGCAGAAAGCTACATGTAATTT
TACGACATTAATAGGACAAGGTGCATTTGGCCCAGTATACAAAGCTCAGA
TGTCAACTGGTGAAACTGTTGCTGTTAAAGTGCTTGCAACTGATTCTAAG
CAAGGGGAGAAGGAATTCCAAACAGAGGTCATGTTATTAGGACGATTGCA
TCATAGGAACTTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGCCAAC
ATATGCTTGTGTATGTCTTCATGAGTAAAGGCAGCCTGGCTTCTCATT
back to top