CX308644

Overview
NameCX308644
Unique NameCX308644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK10_ARATH (Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana GN=CRK10 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.113e-16
Identity = 46/108 (42.59%), Postives = 68/108 (62.96%), Query Frame = 3
Query:  171 FKRSNVVSASGIPEYSYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            F   ++ +A  + +  Y+ +Q AT +F  +  IGQG FG VYK  +S G  VAVK L+  S QGE EF+ EV+L+ +L HRNLV L+G+C +  + +LVY ++   SL
Sbjct:  312 FAGDDITTADSL-QLDYRTIQTATDDFVESNKIGQGGFGEVYKGTLSDGTEVAVKRLSKSSGQGEVEFKNEVVLVAKLQHRNLVRLLGFCLDGEERVLVYEYVPNKSL 418          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y5613_ARATH (Probable receptor-like protein kinase At5g61350 OS=Arabidopsis thaliana GN=At5g61350 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.453e-16
Identity = 46/109 (42.20%), Postives = 66/109 (60.55%), Query Frame = 3
Query:  180 SNVVSASGIPEY-SYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            S+  S  G+  Y  + +LQ AT NF    + G G FG VY  ++  G  VA+K  +  S+QG  EFQTE+ +L +L HR+LV+L+G+C E  + +LVY +MS G L  H
Sbjct:  501 SSFFSNQGLGRYFPFTELQTATQNFDENAVCGVGGFGKVYIGEIDGGTQVAIKRGSQSSEQGINEFQTEIQMLSKLRHRHLVSLIGFCDENKEMILVYEYMSNGPLRDH 609          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y5189_ARATH (Probable LRR receptor-like protein kinase At1g51890 OS=Arabidopsis thaliana GN=At1g51890 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.453e-16
Identity = 43/93 (46.24%), Postives = 61/93 (65.59%), Query Frame = 3
Query:  210 EYSYKDLQKATCNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            +++Y ++ K T NF  ++G+G FG VY   +   + VAVK+L+  S QG KEF+ EV LL R+HHR+LV LVGYC +     L+Y +M KG L
Sbjct:  559 KFTYSEVLKMTKNFERVLGKGGFGTVYHGNLDDTQ-VAVKMLSHSSAQGYKEFKAEVELLLRVHHRHLVGLVGYCDDGDNLALIYEYMEKGDL 650          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y2214_ARATH (Probable receptor-like protein kinase At2g21480 OS=Arabidopsis thaliana GN=At2g21480 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.453e-16
Identity = 49/114 (42.98%), Postives = 68/114 (59.65%), Query Frame = 3
Query:  168 GFKRSNVV-SASGIPEY-SYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            G  +SN+  SA G+  Y S  +LQ+ T NF  + +IG G FG VY   +  G  VA+K     S+QG  EF TE+ +L +L HR+LV+L+GYC E  + +LVY +MS G    H
Sbjct:  496 GSHKSNLYNSALGLGRYFSLSELQEVTKNFDASEIIGVGGFGNVYIGTIDDGTQVAIKRGNPQSEQGITEFHTEIQMLSKLRHRHLVSLIGYCDENAEMILVYEYMSNGPFRDH 609          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: FERON_ARATH (Receptor-like protein kinase FERONIA OS=Arabidopsis thaliana GN=FER PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.453e-16
Identity = 54/144 (37.50%), Postives = 82/144 (56.94%), Query Frame = 3
Query:  111 PESPVKSGW-----NGNGKSMWLEGFKRSNVVS--ASGIPE-----YSYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGET-VAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            P S   SGW      GN  S    G  ++N     AS +P      +S+ +++ AT NF  + ++G G FG VY+ ++  G T VA+K     S+QG  EFQTE+ +L +L HR+LV+L+GYC E  + +LVY +M+ G++  H
Sbjct:  481 PASDATSGWLPLSLYGNSHSA---GSAKTNTTGSYASSLPSNLCRHFSFAEIKAATKNFDESRVLGVGGFGKVYRGEIDGGTTKVAIKRGNPMSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENCEMILVYDYMAHGTMREH 621          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK38_ARATH (Cysteine-rich receptor-like protein kinase 38 OS=Arabidopsis thaliana GN=CRK38 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.453e-16
Identity = 43/81 (53.09%), Postives = 54/81 (66.67%), Query Frame = 3
Query:  246 NFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            +F   IGQG FG VYK ++  GE +AVK L   S QGE EF+ EV+LL RL HRNLV L+G+C E  + +LVY F+   SL
Sbjct:  340 SFENKIGQGGFGSVYKGKLPGGEEIAVKRLTRGSGQGEIEFRNEVLLLTRLQHRNLVKLLGFCNEGDEEILVYEFVPNSSL 420          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK16_ARATH (Putative cysteine-rich receptor-like protein kinase 16 OS=Arabidopsis thaliana GN=CRK16 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 1.453e-16
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 3
Query:  171 FKRSNVVSASGIPEYSYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            F   N ++ SG  ++ +K ++ AT NF  +  +G G FG V+K     G  VAVK L+  S QGE+EF+ EV+L+ +L HRNLV L+G+  E  + +LVY +M   SL
Sbjct:  309 FATENDITTSGSLQFDFKAIEAATNNFQKSNKLGHGGFGEVFKGTFPNGTEVAVKRLSKISGQGEEEFKNEVLLVAKLQHRNLVRLLGFSVEGEEKILVYEYMPNKSL 416          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: THE1_ARATH (Receptor-like protein kinase THESEUS 1 OS=Arabidopsis thaliana GN=THE1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.898e-16
Identity = 42/97 (43.30%), Postives = 64/97 (65.98%), Query Frame = 3
Query:  213 YSYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            + ++++  AT  F  ++L+G G FG VYK  +  G  VAVK     S+QG  EF+TE+ +L +L HR+LV+L+GYC E+ + +LVY +M+ G L SH
Sbjct:  498 FMFQEIMDATNKFDESSLLGVGGFGRVYKGTLEDGTKVAVKRGNPRSEQGMAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSH 594          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: PSKR2_ARATH (Phytosulfokine receptor 2 OS=Arabidopsis thaliana GN=PSKR2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.479e-16
Identity = 46/98 (46.94%), Postives = 58/98 (59.18%), Query Frame = 3
Query:  201 GIPEYSYKDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            G  + S ++L K+T NF+   +IG G FG VYKA    G   AVK L+ D  Q E+EFQ EV  L R  H+NLV+L GYC      +L+Y FM  GSL
Sbjct:  738 GCKDLSVEELLKSTNNFSQANIIGCGGFGLVYKANFPDGSKAAVKRLSGDCGQMEREFQAEVEALSRAEHKNLVSLQGYCKHGNDRLLIYSFMENGSL 835          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK8_ARATH (Cysteine-rich receptor-like protein kinase 8 OS=Arabidopsis thaliana GN=CRK8 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.479e-16
Identity = 43/95 (45.26%), Postives = 64/95 (67.37%), Query Frame = 3
Query:  210 EYSYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            +  Y+ +Q AT +F  +  IG+G FG VYK   S G+ VAVK L+ +S+QGE EF+TEV+++ +L HRNLV L+G+  +  + +LVY +M   SL
Sbjct:  340 QLDYRTIQTATNDFAESNKIGRGGFGEVYKGTFSNGKEVAVKRLSKNSRQGEAEFKTEVVVVAKLQHRNLVRLLGFSLQGEERILVYEYMPNKSL 434          
The following BLAST results are available for this feature:
BLAST of CX308644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CRK10_ARATH1.113e-1642.59Cysteine-rich receptor-like protein kinase 10 OS=A... [more]
Y5613_ARATH1.453e-1642.20Probable receptor-like protein kinase At5g61350 OS... [more]
Y5189_ARATH1.453e-1646.24Probable LRR receptor-like protein kinase At1g5189... [more]
Y2214_ARATH1.453e-1642.98Probable receptor-like protein kinase At2g21480 OS... [more]
FERON_ARATH1.453e-1637.50Receptor-like protein kinase FERONIA OS=Arabidopsi... [more]
CRK38_ARATH1.453e-1653.09Cysteine-rich receptor-like protein kinase 38 OS=A... [more]
CRK16_ARATH1.453e-1641.67Putative cysteine-rich receptor-like protein kinas... [more]
THE1_ARATH1.898e-1643.30Receptor-like protein kinase THESEUS 1 OS=Arabidop... [more]
PSKR2_ARATH2.479e-1646.94Phytosulfokine receptor 2 OS=Arabidopsis thaliana ... [more]
CRK8_ARATH2.479e-1645.26Cysteine-rich receptor-like protein kinase 8 OS=Ar... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21002C05Rv AbsLeaSub1 Citrus clementina cDNA clone C21002C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308644 ID=CX308644; Name=CX308644; organism=Citrus clementina; type=EST; length=498bp
ATAGGAAGCGATCCCAGATAGGGAATAGTAGTTCTAGGAGGGCGGCGACA
CTTCCTATTCGTGCAAACGGTGTTGATTCTTGTAGCATATTATCTGATTC
TACTGTTGGTCCGGAGTCACCTGTGAAATCTGGATGGAATGGCAATGGCA
AGTCCATGTGGCTTGAAGGTTTTAAAAGGAGCAATGTGGTGTCAGCATCT
GGAATACCCGAGTATTCTTACAAGGATTTGCAGAAAGCTACATGTAATTT
TACGACATTAATAGGACAAGGTGCATTTGGCCCAGTATACAAAGCTCAGA
TGTCAACTGGTGAAACTGTTGCTGTTAAAGTGCTTGCAACTGATTCTAAG
CAAGGGGAGAAGGAATTCCAAACAGAGGTCATGTTATTAGGACGATTGCA
TCATAGGAACTTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGCCAAC
ATATGCTTGTGTATGTCTTCATGAGTAAAGGCAGCCTGGCTTCTCATT
back to top