CX308644

Overview
NameCX308644
Unique NameCX308644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK6_ARATH (Cysteine-rich receptor-like protein kinase 6 OS=Arabidopsis thaliana GN=CRK6 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.479e-16
Identity = 43/95 (45.26%), Postives = 64/95 (67.37%), Query Frame = 3
Query:  210 EYSYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            +  Y+ +Q AT +F  +  IG+G FG VYK   S G+ VAVK L+ +S+QGE EF+TEV+++ +L HRNLV L+G+  +  + +LVY +M   SL
Sbjct:  338 QLDYRTIQTATNDFAESNKIGRGGFGEVYKGTFSNGKEVAVKRLSKNSRQGEAEFKTEVVVVAKLQHRNLVRLLGFSLQGEERILVYEYMPNKSL 432          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: BRI1_SOLPE (Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.479e-16
Identity = 43/93 (46.24%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  216 SYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            ++ DL +AT  F   +L+G G FG VYKAQ+  G  VA+K L   S QG++EF  E+  +G++ HRNLV L+GYC    + +LVY +M  GSL
Sbjct:  877 TFADLLEATNGFHNDSLVGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSL 969          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: BRI1_SOLLC (Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.479e-16
Identity = 43/93 (46.24%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  216 SYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            ++ DL +AT  F   +L+G G FG VYKAQ+  G  VA+K L   S QG++EF  E+  +G++ HRNLV L+GYC    + +LVY +M  GSL
Sbjct:  877 TFADLLEATNGFHNDSLVGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSL 969          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: ACCR3_ARATH (Putative serine/threonine-protein kinase-like protein CCR3 OS=Arabidopsis thaliana GN=CCR3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.479e-16
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 3
Query:  180 SNVVSASGIPEYSYKDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVK---VLATDSKQGEKE--FQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            S++  A    E+S+ +L  AT NF+    IG G+FG VY+ +++ G  VA+K   V A   K  EKE  F +E+  L RLHH++LV LVGYC E+ + +LVY +M  G+L  H
Sbjct:  473 SSMKHADKAEEFSFSELASATGNFSLENKIGSGSFGVVYRGKLNDGREVAIKRGEVNAKMKKFQEKETAFDSEIAFLSRLHHKHLVRLVGYCEEREEKLLVYDYMKNGALYDH 585          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y5900_ARATH (Putative receptor-like protein kinase At5g39000 OS=Arabidopsis thaliana GN=At5g39000 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.238e-16
Identity = 60/162 (37.04%), Postives = 84/162 (51.85%), Query Frame = 3
Query:   51 LPIRANGVDSCSILSDSTVGPESPVKSGWNG--NGKSMWL---EGFKRSNVVSASGIP-----EYSYKDLQKATCNFTT--LIGQGAFGPVYKAQMSTGET-VAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            LPI    V S  +L+   VG    +K       +  S W     G   +N   A  +P      +S  +++ AT +F    +IG G FG VYK Q+  G T VAVK L   S QG KEF+TE+ +L +L H +LV+L+GYC E  + +LVY +M  G+L  H
Sbjct:  442 LPITLAVVGSLVVLAMFVVGVLVIMKKKKKSKPSTNSSWCPLPHGTDSTNTKPAKSLPADLCRRFSIFEIKSATNDFEDKLIIGVGGFGSVYKGQIDGGATLVAVKRLEITSNQGAKEFETELEMLSKLRHVHLVSLIGYCDEDNEMVLVYEYMPHGTLKDH 603          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y5241_ARATH (Probable receptor-like protein kinase At5g24010 OS=Arabidopsis thaliana GN=At5g24010 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.238e-16
Identity = 46/107 (42.99%), Postives = 67/107 (62.62%), Query Frame = 3
Query:  189 VSASGIP--EYSYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            VS+SG      S+ +LQ  T NF  + +IG G FG V++  +     VAVK  +  S+QG  EF +E+ +L ++ HR+LV+LVGYC E+ + +LVY +M KG L SH
Sbjct:  467 VSSSGYHTLRISFAELQSGTNNFDRSLVIGVGGFGMVFRGSLKDNTKVAVKRGSPGSRQGLPEFLSEITILSKIRHRHLVSLVGYCEEQSEMILVYEYMDKGPLKSH 573          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK35_ARATH (Putative cysteine-rich receptor-like protein kinase 35 OS=Arabidopsis thaliana GN=CRK35 PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.238e-16
Identity = 41/95 (43.16%), Postives = 65/95 (68.42%), Query Frame = 3
Query:  210 EYSYKDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            ++S+K ++ AT  F+   +IG+G FG VY+ ++S+G  VAVK L+  S QG +EF+ E +L+ +L H+NLV L+G+C E  + +LVY F+   SL
Sbjct:  332 QFSFKTIEAATDKFSDSNMIGRGGFGEVYRGKLSSGPEVAVKRLSKTSGQGAEEFKNEAVLVSKLQHKNLVRLLGFCLEGEEKILVYEFVPNKSL 426          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK28_ARATH (Cysteine-rich receptor-like protein kinase 28 OS=Arabidopsis thaliana GN=CRK28 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.238e-16
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 3
Query:  219 YKDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            ++ L+ AT NF+    +G+G FG VYK   S G+ +AVK L+  S QG+ EF+ E++LL +L HRNLV L+G+C E  + +LVY F+   SL
Sbjct:  351 FETLKAATDNFSPENELGRGGFGSVYKGVFSGGQEIAVKRLSCTSGQGDSEFKNEILLLAKLQHRNLVRLLGFCIEGQERILVYEFIKNASL 442          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y5188_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51880 OS=Arabidopsis thaliana GN=At1g51880 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.229e-16
Identity = 43/91 (47.25%), Postives = 59/91 (64.84%), Query Frame = 3
Query:  216 SYKDLQKATCNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            +Y ++ K T NF  ++G+G FG VY   +   + VAVK+L+  S QG KEF+ EV LL R+HHRNLV LVGYC +     L+Y +M+ G L
Sbjct:  557 TYPEVLKMTNNFERVLGKGGFGTVYHGNLEDTQ-VAVKMLSHSSAQGYKEFKAEVELLLRVHHRNLVGLVGYCDDGDNLALIYEYMANGDL 646          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y1518_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g51860 OS=Arabidopsis thaliana GN=At1g51860 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 4.229e-16
Identity = 43/91 (47.25%), Postives = 59/91 (64.84%), Query Frame = 3
Query:  216 SYKDLQKATCNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            +Y ++ K T NF  ++G+G FG VY   +  G  VAVK+L+  S QG KEF+ EV LL R+HHR+LV LVGYC +     L+Y +M+ G L
Sbjct:  575 TYPEVLKMTNNFERVLGKGGFGTVYHGNLD-GAEVAVKMLSHSSAQGYKEFKAEVELLLRVHHRHLVGLVGYCDDGDNLALIYEYMANGDL 664          
The following BLAST results are available for this feature:
BLAST of CX308644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CRK6_ARATH2.479e-1645.26Cysteine-rich receptor-like protein kinase 6 OS=Ar... [more]
BRI1_SOLPE2.479e-1646.24Systemin receptor SR160 OS=Solanum peruvianum PE=1... [more]
BRI1_SOLLC2.479e-1646.24Brassinosteroid LRR receptor kinase OS=Solanum lyc... [more]
ACCR3_ARATH2.479e-1642.48Putative serine/threonine-protein kinase-like prot... [more]
Y5900_ARATH3.238e-1637.04Putative receptor-like protein kinase At5g39000 OS... [more]
Y5241_ARATH3.238e-1642.99Probable receptor-like protein kinase At5g24010 OS... [more]
CRK35_ARATH3.238e-1643.16Putative cysteine-rich receptor-like protein kinas... [more]
CRK28_ARATH3.238e-1645.65Cysteine-rich receptor-like protein kinase 28 OS=A... [more]
Y5188_ARATH4.229e-1647.25Probable LRR receptor-like serine/threonine-protei... [more]
Y1518_ARATH4.229e-1647.25Probable LRR receptor-like serine/threonine-protei... [more]

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Properties
Property NameValue
Genbank descriptionC21002C05Rv AbsLeaSub1 Citrus clementina cDNA clone C21002C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308644 ID=CX308644; Name=CX308644; organism=Citrus clementina; type=EST; length=498bp
ATAGGAAGCGATCCCAGATAGGGAATAGTAGTTCTAGGAGGGCGGCGACA
CTTCCTATTCGTGCAAACGGTGTTGATTCTTGTAGCATATTATCTGATTC
TACTGTTGGTCCGGAGTCACCTGTGAAATCTGGATGGAATGGCAATGGCA
AGTCCATGTGGCTTGAAGGTTTTAAAAGGAGCAATGTGGTGTCAGCATCT
GGAATACCCGAGTATTCTTACAAGGATTTGCAGAAAGCTACATGTAATTT
TACGACATTAATAGGACAAGGTGCATTTGGCCCAGTATACAAAGCTCAGA
TGTCAACTGGTGAAACTGTTGCTGTTAAAGTGCTTGCAACTGATTCTAAG
CAAGGGGAGAAGGAATTCCAAACAGAGGTCATGTTATTAGGACGATTGCA
TCATAGGAACTTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGCCAAC
ATATGCTTGTGTATGTCTTCATGAGTAAAGGCAGCCTGGCTTCTCATT
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