CX308644

Overview
NameCX308644
Unique NameCX308644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length498
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.230e-15
Identity = 44/116 (37.93%), Postives = 68/116 (58.62%), Query Frame = 3
Query:  186 VVSASGIPEYSYKDLQKATCNFT--TLIGQGAFGPVYK----------AQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            ++ +  +  +S+ +L+ AT NF   +++G+G FG V+K          ++  TG  +AVK L  D  QG +E+  EV  LG+  HR+LV L+GYC E    +LVY FM +GSL +H
Sbjct:   47 ILQSPNLKSFSFAELKSATRNFRPDSVLGEGGFGCVFKGWIDEKSLTASRPGTGLVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHRHLVKLIGYCLEDEHRLLVYEFMPRGSLENH 162          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y5597_ARATH (Probable receptor-like protein kinase At5g59700 OS=Arabidopsis thaliana GN=At5g59700 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.607e-15
Identity = 49/124 (39.52%), Postives = 71/124 (57.26%), Query Frame = 3
Query:  138 NGNGKSMWLEGFKRSNVVSASG--IPEYSYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            + NG +    G   +++ S S   IP  + K+   AT +F     IG G FG VYK ++  G  VAVK     S+QG  EF+TE+ +L +  HR+LV+L+GYC E  + +LVY +M  G+L SH
Sbjct:  446 SSNGTTSSSNGTTLASIASNSSYRIPLVAVKE---ATNSFDENRAIGVGGFGKVYKGELHDGTKVAVKRANPKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILVYEYMENGTLKSH 566          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y1154_ARATH (Probable serine/threonine-protein kinase At1g01540 OS=Arabidopsis thaliana GN=At1g01540 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 1.607e-15
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 3
Query:  213 YSYKDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            Y+ ++L+ AT       +IG+G +G VY+  ++ G  VAVK L  +  Q EKEF+ EV ++GR+ H+NLV L+GYC E    MLVY F+  G+L
Sbjct:  142 YTLRELEAATNGLCEENVIGEGGYGIVYRGILTDGTKVAVKNLLNNRGQAEKEFKVEVEVIGRVRHKNLVRLLGYCVEGAYRMLVYDFVDNGNL 235          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: RLCK7_ARATH (Probable serine/threonine-protein kinase RLCKVII OS=Arabidopsis thaliana GN=At1g07870 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.607e-15
Identity = 53/143 (37.06%), Postives = 81/143 (56.64%), Query Frame = 3
Query:   93 SDST-VGPESPVKSGWNGNGK----SMWLEGFKRSNVVSASGIPEYSYKDLQKATCNFTT--LIGQGAFGPVYKAQMST-GETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            SDST V P   V +   G GK    S+ ++G   ++ V+      +++++L +AT NF +   +G+G FG V+K  +    + VA+K L  +  QG +EF  EV+ L    H NLV L+G+CAE  Q +LVY +M +GSL  H
Sbjct:   47 SDSTKVSPYRDVNNE-GGVGKEDQLSLDVKGLNLNDQVTGKKAQTFTFQELAEATGNFRSDCFLGEGGFGKVFKGTIEKLDQVVAIKQLDRNGVQGIREFVVEVLTLSLADHPNLVKLIGFCAEGDQRLLVYEYMPQGSLEDH 188          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: HERK_ARATH (Receptor-like protein kinase HERK 1 OS=Arabidopsis thaliana GN=HERK1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.607e-15
Identity = 49/125 (39.20%), Postives = 73/125 (58.40%), Query Frame = 3
Query:  144 NGKSMWLEGFKRSNVVSASGIPEYS-----YKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            NG SM   G K SN  + + I   +     +  ++ AT NF  +  IG G FG VYK +++ G  VAVK     S+QG  EF+TE+ +L +  HR+LV+L+GYC E  + +L+Y +M  G++ SH
Sbjct:  448 NGTSM---GSKYSNGTTLTSITTNANYRIPFAAVKDATNNFDESRNIGVGGFGKVYKGELNDGTKVAVKRGNPKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDENNEMILIYEYMENGTVKSH 569          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 2.099e-15
Identity = 43/116 (37.07%), Postives = 69/116 (59.48%), Query Frame = 3
Query:  186 VVSASGIPEYSYKDLQKATCNFT--TLIGQGAFGPVYK----------AQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSLASH 497
            ++  + +  +S  +L+ AT NF   +++G+G FG V+K          ++  TG  +AVK L  +  QG +E+  E+  LG+L H NLV L+GYC E+   +LVY FM++GSL +H
Sbjct:   47 ILQNANLKNFSLSELKSATRNFRPDSVVGEGGFGCVFKGWIDESSLAPSKPGTGIVIAVKRLNQEGFQGHREWLAEINYLGQLDHPNLVKLIGYCLEEEHRLLVYEFMTRGSLENH 162          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK39_ARATH (Putative cysteine-rich receptor-like protein kinase 39 OS=Arabidopsis thaliana GN=CRK39 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.099e-15
Identity = 53/121 (43.80%), Postives = 67/121 (55.37%), Query Frame = 3
Query:  165 EGFKRSNVVSASGIPEYSYKDLQ-----------KATCNFTT--LIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            E + + NV SA    EYS  D Q            AT  F++   +GQG FG VYK  +  G+ VAVK L   S QG+ EF+ EV LL RL HRNLV L+G+C E  + +LVY F+   SL
Sbjct:  318 ESYNKINVGSA----EYSDSDGQFMLRFDLGMVLAATDEFSSENTLGQGGFGTVYKGTLLNGQEVAVKRLTKGSGQGDIEFKNEVSLLTRLQHRNLVKLLGFCNEGDEQILVYEFVPNSSL 434          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: CRK21_ARATH (Cysteine-rich receptor-like protein kinase 21 OS=Arabidopsis thaliana GN=CRK21 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.099e-15
Identity = 42/104 (40.38%), Postives = 63/104 (60.58%), Query Frame = 3
Query:  183 NVVSASGIPEYSYKDLQKATCNF--TTLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            ++ ++SG   + ++ ++ AT NF  +  +G G FG VYK     G  VA K L+  S QGE EF+ EV+L+ RL H+NLV L+G+  E  + +LVY F+   SL
Sbjct:  341 DLTASSGSLRFDFRAIKAATSNFHKSNKLGHGGFGAVYKGMFPNGTEVAAKRLSKPSDQGEPEFKNEVLLVARLQHKNLVGLLGFSVEGEEKILVYEFVPNKSL 444          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: Y2296_ARATH (Probable receptor-like protein kinase At2g42960 OS=Arabidopsis thaliana GN=At2g42960 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.741e-15
Identity = 43/107 (40.19%), Postives = 64/107 (59.81%), Query Frame = 3
Query:  201 GIPEYSY---------KDLQKATCNFT--TLIGQGAFGPVYKAQMSTGETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLVYVFMSKGSL 488
            G+PE S+         +DL+ AT  F    ++G+G +G VY+ ++  G  VAVK L  +  Q EKEF+ EV  +G + H+NLV L+GYC E    MLVY +++ G+L
Sbjct:  158 GLPEISHLGWGHWFTLRDLELATNRFAPVNVLGEGGYGVVYRGKLVNGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNSGNL 264          
BLAST of CX308644 vs. ExPASy Swiss-Prot
Match: GSO1_ARATH (LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.741e-15
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 3
Query:  219 YKDLQKATCNFTT--LIGQGAFGPVYKAQMSTGETVAVK-VLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEK--GQHMLVYVFMSKGSL 488
            ++D+ +AT N +   +IG G  G VYKA++  GETVAVK +L  D     K F  EV  LGR+ HR+LV L+GYC+ K  G ++L+Y +M  GS+
Sbjct:  941 WEDIMEATHNLSEEFMIGSGGSGKVYKAELENGETVAVKKILWKDDLMSNKSFSREVKTLGRIRHRHLVKLMGYCSSKSEGLNLLIYEYMKNGSI 1035          
The following BLAST results are available for this feature:
BLAST of CX308644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
APK1A_ARATH1.230e-1537.93Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
Y5597_ARATH1.607e-1539.52Probable receptor-like protein kinase At5g59700 OS... [more]
Y1154_ARATH1.607e-1543.62Probable serine/threonine-protein kinase At1g01540... [more]
RLCK7_ARATH1.607e-1537.06Probable serine/threonine-protein kinase RLCKVII O... [more]
HERK_ARATH1.607e-1539.20Receptor-like protein kinase HERK 1 OS=Arabidopsis... [more]
NAK_ARATH2.099e-1537.07Probable serine/threonine-protein kinase NAK OS=Ar... [more]
CRK39_ARATH2.099e-1543.80Putative cysteine-rich receptor-like protein kinas... [more]
CRK21_ARATH2.099e-1540.38Cysteine-rich receptor-like protein kinase 21 OS=A... [more]
Y2296_ARATH2.741e-1540.19Probable receptor-like protein kinase At2g42960 OS... [more]
GSO1_ARATH2.741e-1545.26LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionC21002C05Rv AbsLeaSub1 Citrus clementina cDNA clone C21002C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308644 ID=CX308644; Name=CX308644; organism=Citrus clementina; type=EST; length=498bp
ATAGGAAGCGATCCCAGATAGGGAATAGTAGTTCTAGGAGGGCGGCGACA
CTTCCTATTCGTGCAAACGGTGTTGATTCTTGTAGCATATTATCTGATTC
TACTGTTGGTCCGGAGTCACCTGTGAAATCTGGATGGAATGGCAATGGCA
AGTCCATGTGGCTTGAAGGTTTTAAAAGGAGCAATGTGGTGTCAGCATCT
GGAATACCCGAGTATTCTTACAAGGATTTGCAGAAAGCTACATGTAATTT
TACGACATTAATAGGACAAGGTGCATTTGGCCCAGTATACAAAGCTCAGA
TGTCAACTGGTGAAACTGTTGCTGTTAAAGTGCTTGCAACTGATTCTAAG
CAAGGGGAGAAGGAATTCCAAACAGAGGTCATGTTATTAGGACGATTGCA
TCATAGGAACTTGGTGAATTTGGTTGGATATTGTGCAGAAAAGGGCCAAC
ATATGCTTGTGTATGTCTTCATGAGTAAAGGCAGCCTGGCTTCTCATT
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