CX308650

Overview
NameCX308650
Unique NameCX308650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP1A2_BALAC (Cytochrome P450 1A2 OS=Balaenoptera acutorostrata GN=CYP1A2 PE=2 SV=3)

HSP 1 Score: 98.5969 bits (244), Expect = 1.315e-20
Identity = 50/148 (33.78%), Postives = 81/148 (54.73%), Query Frame = 2
Query:    5 RQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVDMGEALGLSIQKA 448
            R+   SD   L YL+A + E  R     P +IPH +I + T++G+ +P    + IN W++  DP++W +P +F+PERFLT H     +  + +++ FG G+R C G   A   +   LA LL   +F+ P    VD+    GL+++ A
Sbjct:  355 RRPRLSDRSQLPYLEAFILETFRHSSFVPFTIPHSTIRDTTLNGFYIPKELCVFINQWQVNHDPKLWGDPSEFRPERFLTSHDTTISKTLSEKVMLFGMGKRRCIGEVLAKWEIFLFLAILLQQLEFSVPPGVKVDLTPTYGLTMKPA 502          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP17A_PERLE (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Peromyscus leucopus GN=Cyp17a1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.998e-20
Identity = 49/135 (36.30%), Postives = 76/135 (56.30%), Query Frame = 2
Query:   20 SDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQ-----NFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPV 409
            +D  +L+ L+A ++E +R+ P +P+ IPHK+  + +I  + +P  T +VIN+W L  + + W++P +F PERFL      D  G      +   LPFG+G RAC G   A QV+   +A LL  FD   P   P+
Sbjct:  343 NDRNHLLMLEATIREVLRIRPVAPMLIPHKANIDSSIGEFTIPKDTHVVINLWALHHNEKEWDQPDRFMPERFL------DATGSHLITPSLSYLPFGAGPRACIGEVLARQVLFLYVACLLQRFDLDVPDGAPM 471          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP1A2_HUMAN (Cytochrome P450 1A2 OS=Homo sapiens GN=CYP1A2 PE=1 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 8.525e-20
Identity = 49/150 (32.67%), Postives = 81/150 (54.00%), Query Frame = 2
Query:    2 KRQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVDMGEALGLSIQKAR 451
            +R+   SD   L YL+A + E  R     P +IPH +  + T++G+ +P    + +N W++  DP +WE+P +F+PERFLT       +  + +++ FG G+R C G   A   +   LA LL   +F+ P    VD+    GL+++ AR
Sbjct:  354 ERRPRLSDRPQLPYLEAFILETFRHSSFLPFTIPHSTTRDTTLNGFYIPKKCCVFVNQWQVNHDPELWEDPSEFRPERFLTADGTAINKPLSEKMMLFGMGKRRCIGEVLAKWEIFLFLAILLQQLEFSVPPGVKVDLTPIYGLTMKHAR 503          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP1A2_RABIT (Cytochrome P450 1A2 OS=Oryctolagus cuniculus GN=CYP1A2 PE=1 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 1.113e-19
Identity = 50/149 (33.56%), Postives = 81/149 (54.36%), Query Frame = 2
Query:    5 RQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVDMGEALGLSIQKAR 451
            RQ   SD   L YL+A + E  R     P +IPH +  + T++G+++P    + IN W++  DP++W +P +F+PERFLT       +  + ++  FG G+R C G + A   +   LA LL   +F+ P   PVD+    GL+++  R
Sbjct:  355 RQPRLSDRPQLPYLEAFILELFRHTSFVPFTIPHSTTRDTTLNGFHIPKECCIFINQWQINHDPQLWGDPEEFRPERFLTADGAAINKPLSEKVTLFGLGKRRCIGETLARWEVFLFLAILLQRLEFSVPPGVPVDLTPIYGLTMKHPR 503          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP1A1_CANFA (Cytochrome P450 1A1 OS=Canis familiaris GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.480e-19
Identity = 50/149 (33.56%), Postives = 81/149 (54.36%), Query Frame = 2
Query:    5 RQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVDMGEALGLSIQKAR 451
            RQ   SD   L Y++A + E  R     P +IPH +  + ++SG+ +P    + +N W++  D ++W  P +FQPERFLT    I+ +  + +++ FG G+R C G + A   +   LA LL   +F+ P    VDM    GL+++ AR
Sbjct:  359 RQPRLSDRPQLPYMEAFILETFRHASFVPFTIPHSTTRDTSLSGFYIPKGRCVFVNQWQINHDQKLWGNPSEFQPERFLTLDGTIN-KALSEKVILFGLGKRKCIGETIARLEVFLFLAILLQQVEFSVPEGTKVDMTPIYGLTMKHAR 506          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP1A1_FELCA (Cytochrome P450 1A1 OS=Felis catus GN=CYP1A1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.231e-19
Identity = 49/150 (32.67%), Postives = 84/150 (56.00%), Query Frame = 2
Query:    2 KRQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVDMGEALGLSIQKAR 451
            +RQ   SD   L Y++A + E  R     P +IPH + ++ ++SG+ +P    + +N W++  D ++W +P +F+PERFLT    I+ +  + +++ FG G+R C G + A   +   LA LL   +F+ P    VDM    GL+++ AR
Sbjct:  359 ERQPRLSDRLQLPYMEAFILEMFRHTSFVPFTIPHSTTKDTSLSGFYIPKERCVFVNQWQINHDQKLWGDPSEFRPERFLTPDGTIN-KALSEKVILFGLGKRKCIGETIARLEVFLFLAILLQQVEFSVPQGTKVDMTPIYGLTMKHAR 507          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP17A_RANDY (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Rana dybowskii GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.231e-19
Identity = 51/142 (35.92%), Postives = 77/142 (54.23%), Query Frame = 2
Query:   20 SDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPV-DMGEALGLSIQ 442
            SD K L Y +A + E +R+ P SPL IPH +++E +I  Y +P   ++VIN+W L  D + W  P  F P+RFL  + +  V   +   LPFG+G R C G + A   +   L+ +L  F    P  +P+ D+    G+ IQ
Sbjct:  358 SDRKILHYTEAAISEVLRIRPVSPLLIPHVALKESSIGEYTIPKEARVVINLWSLHHDEKEWVNPHLFSPDRFLDENGN-RVYSPSPSFLPFGAGIRVCLGEALAKMEVFLFLSWILQRFTLEVPEGDPLPDLEGKFGVVIQ 498          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C77A3_SOYBN (Cytochrome P450 77A3 OS=Glycine max GN=CYP77A3 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 4.231e-19
Identity = 43/139 (30.94%), Postives = 81/139 (58.27%), Query Frame = 2
Query:    2 KRQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRG-QNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDF-ATPSNEPVD 412
            +++V+E D++ + YL A++KE +R +P +   + H   E  T+ GY++P    + +    +  DP+ W  P KF PERF++  ++ D+ G    +++PFG GRR CPG++ A   +   +A ++  F++ A P  + +D
Sbjct:  346 EKKVDEKDVEKMPYLHAVVKELLRKHPPTHFVLTHAVTEPTTLGGYDIPIDANVEVYTPAIAEDPKNWLNPEKFDPERFISGGEEADITGVTGVKMMPFGVGRRICPGLAMATVHIHLMMARMVQEFEWGAYPPEKKMD 484          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP1A2_PONAB (Cytochrome P450 1A2 OS=Pongo abelii GN=CYP1A2 PE=2 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 5.526e-19
Identity = 49/149 (32.89%), Postives = 79/149 (53.02%), Query Frame = 2
Query:    5 RQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVDMGEALGLSIQKAR 451
            R+   SD   L YL+A + E  R     P +IPH +  + T++G+ +P    + +N W++  DP +WE+P +F PERFLT       +  + +++ FG G+R C G   A   +   LA LL   +F+ P    VD+    GL+++ AR
Sbjct:  355 RRPRLSDRPQLPYLKAFILETFRHSSFLPFTIPHSTTRDTTLNGFYIPKECCVFVNQWQVNHDPELWEDPSEFWPERFLTTDGTAINKPLSEKVMLFGMGKRRCIGEVLANWEVFLFLAILLQQLEFSVPPGVKVDLTPIYGLTMKHAR 503          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C71AR_ARATH (Cytochrome P450 71A27 OS=Arabidopsis thaliana GN=CYP71A27 PE=2 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 5.526e-19
Identity = 48/154 (31.17%), Postives = 88/154 (57.14%), Query Frame = 2
Query:   11 VNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWE-EPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDF----ATPSNEPVDMGEALGLSIQKARPL 457
            V E +++ + YL  ++KE +RL+P+ PL     S E+  + GY++   T ++IN W LQR+P +W  +  +++PER      +   +  + + +PFG+GRR CPG+ F+L + +  LA L+  F++        ++  D+ EA G+ + +  PL
Sbjct:  339 VTEKEVEKMNYLHCVIKEGLRLHPSGPLLFRLPS-EDVQLKGYDISAGTHVIINAWALQRNPAIWGLDANEYRPERHFWY--EFGFQRTDSKFVPFGAGRRLCPGIGFSLVLSKLALANLVKRFNWRLKVGPVGDDKPDLAEASGIDVCRKFPL 489          
The following BLAST results are available for this feature:
BLAST of CX308650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 392
Match NameE-valueIdentityDescription
CP1A2_BALAC1.315e-2033.78Cytochrome P450 1A2 OS=Balaenoptera acutorostrata ... [more]
CP17A_PERLE4.998e-2036.30Steroid 17-alpha-hydroxylase/17,20 lyase OS=Peromy... [more]
CP1A2_HUMAN8.525e-2032.67Cytochrome P450 1A2 OS=Homo sapiens GN=CYP1A2 PE=1... [more]
CP1A2_RABIT1.113e-1933.56Cytochrome P450 1A2 OS=Oryctolagus cuniculus GN=CY... [more]
CP1A1_CANFA2.480e-1933.56Cytochrome P450 1A1 OS=Canis familiaris GN=CYP1A1 ... [more]
CP1A1_FELCA4.231e-1932.67Cytochrome P450 1A1 OS=Felis catus GN=CYP1A1 PE=2 ... [more]
CP17A_RANDY4.231e-1935.92Steroid 17-alpha-hydroxylase/17,20 lyase OS=Rana d... [more]
C77A3_SOYBN4.231e-1930.94Cytochrome P450 77A3 OS=Glycine max GN=CYP77A3 PE=... [more]
CP1A2_PONAB5.526e-1932.89Cytochrome P450 1A2 OS=Pongo abelii GN=CYP1A2 PE=2... [more]
C71AR_ARATH5.526e-1931.17Cytochrome P450 71A27 OS=Arabidopsis thaliana GN=C... [more]

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Properties
Property NameValue
Genbank descriptionC21002C11Rv AbsLeaSub1 Citrus clementina cDNA clone C21002C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308650 ID=CX308650; Name=CX308650; organism=Citrus clementina; type=EST; length=459bp
GAAAAGGCAAGTGAATGAGTCAGATATAAAGAATTTAGTTTACTTGCAAG
CCATTCTCAAAGAAGCAATGCGTTTGTATCCTGCTTCGCCACTCTCAATT
CCACACAAGTCTATAGAAGAGTGCACGATTAGTGGTTATAATGTCCCTAC
CAGCACACAACTTGTTATCAATGTTTGGAAGCTTCAACGTGATCCACGTG
TCTGGGAAGAGCCTTGTAAGTTTCAGCCAGAAAGATTTTTGACAAGGCAC
AAGGATATTGACGTCAGAGGACAAAATTTTGAATTGTTACCTTTTGGTAG
TGGTAGAAGAGCTTGTCCTGGAGTTTCATTTGCCCTCCAAGTTATGGAAT
TTACACTTGCTGCTTTACTTCATGGCTTTGATTTTGCAACCCCATCAAAT
GAACCGGTGGACATGGGAGAGGCACTAGGGTTGAGTATCCAGAAAGCTAG
ACCACTTGA
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