CX308650

Overview
NameCX308650
Unique NameCX308650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP3A7_HUMAN (Cytochrome P450 3A7 OS=Homo sapiens GN=CYP3A7 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.656e-13
Identity = 43/121 (35.54%), Postives = 65/121 (53.72%), Query Frame = 2
Query:   26 IKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKD-IDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDF 385
            +  L YL  ++ E +RL+P + + +     ++  I+G  +P    ++I  + L  DP+ W EP KF PERF  ++KD ID     +   PFGSG R C G+ FAL  M+  L  +L  F F
Sbjct:  350 VLQLEYLDMVVNETLRLFPVA-MRLERVCKKDVEINGMFIPKGVVVMIPSYVLHHDPKYWREPEKFLPERFSKKNKDNID----PYIYTPFGSGPRNCIGMRFALVNMKLALVRVLQNFSF 465          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP27A_RAT (Sterol 26-hydroxylase, mitochondrial OS=Rattus norvegicus GN=Cyp27a1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.656e-13
Identity = 42/121 (34.71%), Postives = 70/121 (57.85%), Query Frame = 2
Query:   23 DIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQN-FELLPFGSGRRACPGVSFALQVMEFTLAALLHGFD 382
            D  ++  L+A++KE +RLYP  P +    + +E  I+G+  P +TQ V+  + + RDP V+ EP  FQP R+L + +D +   Q+ F  +PFG G R+C G   A   M+  L+ L+  ++
Sbjct:  381 DFAHMPLLKAVIKETLRLYPVVPTNSRIITEKETEINGFLFPKNTQFVLCHYVVSRDPSVFPEPESFQPHRWLRKREDDNSGIQHPFGSVPFGYGVRSCLGRRIAELEMQLLLSRLIQKYE 501          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C97B3_ARATH (Cytochrome P450 97B3 OS=Arabidopsis thaliana GN=CYP97B3 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.656e-13
Identity = 49/149 (32.89%), Postives = 65/149 (43.62%), Query Frame = 2
Query:   26 IKNLVYLQAILKEAMRLYPASPLSIP-----------HKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRG-------------------QNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFD 382
            +K L Y++ I+ E +RL+P  PL I            HK  +E    G+ VP  T + I+V+ L R P  W+ P  F+PERFL   +   + G                    +F  LPFG G R C G  FAL      LA L   FD
Sbjct:  403 MKKLEYIRLIVVEVLRLFPQPPLLIRRTLKPETLPGGHKGEKE----GHKVPKGTDIFISVYNLHRSPYFWDNPHDFEPERFLRTKESNGIEGWAGFDPSRSPGALYPNEIIADFAFLPFGGGPRKCIGDQFALMESTVALAMLFQKFD 547          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C555A_DICDI (Probable cytochrome P450 555A1 OS=Dictyostelium discoideum GN=cyp555a1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.656e-13
Identity = 37/117 (31.62%), Postives = 63/117 (53.85%), Query Frame = 2
Query:   41 YLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFAT 391
            Y  ++LKE  R +  SPLS PH++ ++  ++GY +P+ +Q++ NV+    + + WE P +F P+RFL  ++         +L+ FG G R C G  FAL  +      L     F++
Sbjct:  347 YYNSVLKEVERRFTVSPLSQPHRTNKDIILNGYFIPSGSQIIQNVYSCHLNDKDWENPFQFNPDRFLNNNQ------LEKKLITFGMGPRNCLGFQFALMSIWIVNLILFKSIKFSS 457          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: THAS_HUMAN (Thromboxane-A synthase OS=Homo sapiens GN=TBXAS1 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 3.469e-13
Identity = 39/119 (32.77%), Postives = 60/119 (50.42%), Query Frame = 2
Query:   29 KNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDF 385
            + L YL  ++ E +R+YP +      ++ ++C + G  +P    L + V  L  DP  W  P  F PERF    +    + + F  LPFG+G R+C GV   L  ++ TL  +LH F F
Sbjct:  388 EGLPYLDMVIAETLRMYPPA-FRFTREAAQDCEVLGQRIPAGAVLEMAVGALHHDPEHWPSPETFNPERFTAEARQ---QHRPFTYLPFGAGPRSCLGVRLGLLEVKLTLLHVLHKFRF 502          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP3AB_MOUSE (Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.469e-13
Identity = 41/121 (33.88%), Postives = 65/121 (53.72%), Query Frame = 2
Query:   26 IKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHK-DIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDF 385
            +  + YL  +L E +RLYP +   +     ++  ++G  +P  + ++I  + L  DP+ W EP +FQPERF   +K  ID     +  LPFG+G R C G+ FAL  M+  L  ++  F F
Sbjct:  351 VMEMEYLDMVLNETLRLYPIAN-RLERVCKKDVELNGVYIPKGSTVMIPSYALHHDPQHWSEPEEFQPERFSKENKGSID----PYVYLPFGNGPRNCLGMRFALMNMKLALTKIMQNFSF 466          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP3AA_MESAU (Lithocholate 6-beta-hydroxylase OS=Mesocricetus auratus GN=CYP3A10 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.469e-13
Identity = 49/155 (31.61%), Postives = 78/155 (50.32%), Query Frame = 2
Query:    2 KRQVNESDIKNLVYLQAILKEAMRLYP-ASPLS-IPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHK-DIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVDMGEALGLSIQKARPL 457
            K  V    +  + YL  ++ E +RLYP A+ L  I  K++E   I+G  +P    +++  + L RDP  W EP +F+PERF   +K  ID     +  +PFG+G R C G+ FAL  M+  + ++L  F   T       +  A  + +Q   P+
Sbjct:  342 KAPVTYDVLMGMEYLDMVINEGLRLYPIANRLERISKKAVE---INGLFIPKGITVMVPTYPLHRDPEYWPEPEEFRPERFSKENKGSID----PYVYMPFGNGPRNCIGMRFALLSMKLAVVSVLQNFTLQTCEQTENHLKFARQIILQPENPI 489          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP2K4_ONCMY (Cytochrome P450 2K4 OS=Oncorhynchus mykiss GN=cyp2k4 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.469e-13
Identity = 43/148 (29.05%), Postives = 67/148 (45.27%), Query Frame = 2
Query:    5 RQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATP---SNEPVDMGEALGLSI 439
            RQ    D KNL Y  A++ E  RL   SP+++PH +  + T  GY +   T ++  +  + +D   WE P  F P  FL        R      + F +GRR C G   A   +     +LL  F F+ P   + + +D+   LG ++
Sbjct:  347 RQTLVEDRKNLPYTDAVIHETQRLANISPMAVPHTTSRDVTFQGYFIKKGTSVIPLLMSVLQDDNEWESPNTFNPSHFLDEQGGFVKRD---AFMAFSAGRRVCLGEGLARMELFLFFTSLLQRFRFSPPPGVTEDDLDLTPLLGFTL 491          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP2DQ_RAT (Cytochrome P450 2D26 OS=Rattus norvegicus GN=Cyp2d26 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.469e-13
Identity = 40/134 (29.85%), Postives = 65/134 (48.51%), Query Frame = 2
Query:    5 RQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEP 406
            R+   +D   + +  A++ E  R     P +IPH +  +    G+ +P  T L+ N+  + +D  VWE+P +F PE FL    +  V+ + F  +PF +GRRAC G   A   +      LL  F F+  +  P
Sbjct:  346 RRPEMADQARMPFTNAVIHEVQRFADIVPTNIPHMTSRDIKFQGFLIPKGTTLIPNLSSVLKDETVWEKPLRFHPEHFLDAQGNF-VKHEAF--MPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSVLAGRP 476          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP2DJ_CALJA (Cytochrome P450 2D19 OS=Callithrix jacchus GN=CYP2D19 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.469e-13
Identity = 41/137 (29.93%), Postives = 64/137 (46.72%), Query Frame = 2
Query:    5 RQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFE---LLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEP 406
            R+    D   + Y  A++ E  R     PL + H +  +  + G+ +P  T L  N+  + +D   WE+P +F PE FL      D +G+  +    LPF +GRRAC G   A   +      LL  F F+ P+ +P
Sbjct:  343 RRPEMGDQTYMPYTTAVIHEVQRFADIVPLGVTHMTSRDIEVQGFLIPKGTTLFTNLSSVLKDEANWEKPFRFHPEHFL------DAQGRFVKPEAFLPFSAGRRACLGEPLARMELFLFFTCLLQRFSFSVPAGQP 473          
The following BLAST results are available for this feature:
BLAST of CX308650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 392
Match NameE-valueIdentityDescription
CP3A7_HUMAN2.656e-1335.54Cytochrome P450 3A7 OS=Homo sapiens GN=CYP3A7 PE=1... [more]
CP27A_RAT2.656e-1334.71Sterol 26-hydroxylase, mitochondrial OS=Rattus nor... [more]
C97B3_ARATH2.656e-1332.89Cytochrome P450 97B3 OS=Arabidopsis thaliana GN=CY... [more]
C555A_DICDI2.656e-1331.62Probable cytochrome P450 555A1 OS=Dictyostelium di... [more]
THAS_HUMAN3.469e-1332.77Thromboxane-A synthase OS=Homo sapiens GN=TBXAS1 P... [more]
CP3AB_MOUSE3.469e-1333.88Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE... [more]
CP3AA_MESAU3.469e-1331.61Lithocholate 6-beta-hydroxylase OS=Mesocricetus au... [more]
CP2K4_ONCMY3.469e-1329.05Cytochrome P450 2K4 OS=Oncorhynchus mykiss GN=cyp2... [more]
CP2DQ_RAT3.469e-1329.85Cytochrome P450 2D26 OS=Rattus norvegicus GN=Cyp2d... [more]
CP2DJ_CALJA3.469e-1329.93Cytochrome P450 2D19 OS=Callithrix jacchus GN=CYP2... [more]

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Properties
Property NameValue
Genbank descriptionC21002C11Rv AbsLeaSub1 Citrus clementina cDNA clone C21002C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308650 ID=CX308650; Name=CX308650; organism=Citrus clementina; type=EST; length=459bp
GAAAAGGCAAGTGAATGAGTCAGATATAAAGAATTTAGTTTACTTGCAAG
CCATTCTCAAAGAAGCAATGCGTTTGTATCCTGCTTCGCCACTCTCAATT
CCACACAAGTCTATAGAAGAGTGCACGATTAGTGGTTATAATGTCCCTAC
CAGCACACAACTTGTTATCAATGTTTGGAAGCTTCAACGTGATCCACGTG
TCTGGGAAGAGCCTTGTAAGTTTCAGCCAGAAAGATTTTTGACAAGGCAC
AAGGATATTGACGTCAGAGGACAAAATTTTGAATTGTTACCTTTTGGTAG
TGGTAGAAGAGCTTGTCCTGGAGTTTCATTTGCCCTCCAAGTTATGGAAT
TTACACTTGCTGCTTTACTTCATGGCTTTGATTTTGCAACCCCATCAAAT
GAACCGGTGGACATGGGAGAGGCACTAGGGTTGAGTATCCAGAAAGCTAG
ACCACTTGA
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