CX308650

Overview
NameCX308650
Unique NameCX308650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP21A_CANLU (Steroid 21-hydroxylase OS=Canis lupus GN=CYP21 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.469e-13
Identity = 43/119 (36.13%), Postives = 60/119 (50.42%), Query Frame = 2
Query:   23 DIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGF 379
            D   L  L A + E +RL P  PL++PH +    +ISGY++P    ++ N+     D  VWE P +F+P+RFL       V G +  +L FG G R C G   A   +   LA LL  F
Sbjct:  336 DPTRLPLLSATVAEVLRLRPVVPLALPHCTTRPSSISGYDIPEGMVVIPNLQGAHLDETVWERPQEFRPDRFL-------VPGASPRVLAFGCGARVCLGEPLARLELLVVLAQLLRAF 447          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP21A_CANFA (Steroid 21-hydroxylase OS=Canis familiaris GN=CYP21 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 3.469e-13
Identity = 43/119 (36.13%), Postives = 60/119 (50.42%), Query Frame = 2
Query:   23 DIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGF 379
            D   L  L A + E +RL P  PL++PH +    +ISGY++P    ++ N+     D  VWE P +F+P+RFL       V G +  +L FG G R C G   A   +   LA LL  F
Sbjct:  336 DPTRLPLLSATVAEVLRLRPVVPLALPHCTTRPSSISGYDIPEGMVVIPNLQGAHLDETVWERPQEFRPDRFL-------VPGASPRVLAFGCGARVCLGEPLARLELLVVLAQLLRAF 447          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP18A_DROME (Cytochrome P450 18a1 OS=Drosophila melanogaster GN=Cyp18a1 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.469e-13
Identity = 38/129 (29.46%), Postives = 67/129 (51.94%), Query Frame = 2
Query:   23 DIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPV 409
            D++ L   ++ + E+MR     PL+  H    +  ++GY +P  + ++  +  +  DP +WE+P +F+P RF+    +  VR   +  +PFG GRR C G   A   +    A+ +H FD A P  +P+
Sbjct:  372 DLQYLPITESTILESMRRSSIVPLATTHSPTRDVELNGYTIPAGSHVIPLINSVHMDPNLWEKPEEFRPSRFI--DTEGKVRKPEY-FIPFGVGRRMCLGDVLARMELFLFFASFMHCFDIALPEGQPL 497          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP3A9_RAT (Cytochrome P450 3A9 OS=Rattus norvegicus GN=Cyp3a9 PE=2 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 4.531e-13
Identity = 44/152 (28.95%), Postives = 73/152 (48.03%), Query Frame = 2
Query:    2 KRQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVDMGEALGLSIQKARPL 457
            K       +  + YL  ++ E +RLYP +   +      +  I+G  +P  T ++I  + L +DP  W EP +F+PERF  +++D       +  LPFG+G R C G+ FAL  M+  L  +L  F F       + +  +    +Q  +PL
Sbjct:  342 KAHATYDTLLQMEYLDMVVNETLRLYPIAG-RLERVCKTDVEINGVFIPKGTVVMIPTFALHKDPHYWPEPEEFRPERFSKKNQD---NINPYMYLPFGNGPRNCIGMRFALMNMKVALFRVLQNFSFQPCKETQIPLKLSKQGLLQPEKPL 489          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP2DQ_MOUSE (Cytochrome P450 2D26 OS=Mus musculus GN=Cyp2d26 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.531e-13
Identity = 39/137 (28.47%), Postives = 64/137 (46.72%), Query Frame = 2
Query:    5 RQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRG---QNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEP 406
            R    +D   + Y  A++ E  R     P ++PH +  +     + +P  T L+ N+  + +D  VWE+P +F PE FL      D +G   ++   +PF +GRR+C G   A   +      LL  F F+ P  +P
Sbjct:  346 RHPEMADQARMPYTNAVIHEVQRFADIVPTNLPHMTSRDIKFQDFFIPKGTTLIPNLSSVLKDETVWEKPLRFYPEHFL------DAQGHFVKHEAFMPFSAGRRSCLGEPLARMELFLFFTCLLQRFSFSVPDGQP 476          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP3AI_RAT (Cytochrome P450 3A18 OS=Rattus norvegicus GN=Cyp3a18 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.917e-13
Identity = 43/128 (33.59%), Postives = 68/128 (53.12%), Query Frame = 2
Query:    2 KRQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHK-DIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFD 382
            K  V    +  + YL  ++ E++RLYP +   +   S ++  I+G  +P  T + I ++ L R+P  W EP +F PERF   +K  ID     +  LPFG+G R C G+ FAL  M+  +  +L  F+
Sbjct:  342 KAPVTYDALMEMEYLDMVVNESLRLYPIAT-RLDRVSKKDVEINGVFIPKGTVVTIPIYPLHRNPEYWLEPEEFNPERFSKENKGSID----PYVYLPFGNGPRNCIGMRFALISMKLAVIGVLQNFN 464          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP3A1_RAT (Cytochrome P450 3A1 OS=Rattus norvegicus GN=Cyp3a1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.917e-13
Identity = 43/121 (35.54%), Postives = 65/121 (53.72%), Query Frame = 2
Query:   26 IKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHK-DIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDF 385
            +  + YL  +L E +RLYP     +     ++  I+G  +P  + ++I  + L RDP+ W EP +F+PERF   +K  ID     +  LPFG+G R C G+ FAL  M+  L  +L  F F
Sbjct:  351 VMEMEYLDMVLNETLRLYPIGN-RLERVCKKDVEINGVFMPKGSVVMIPSYALHRDPQHWPEPEEFRPERFSKENKGSID----PYVYLPFGNGPRNCIGMRFALMNMKLALTKVLQNFSF 466          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP2L1_PANAR (Cytochrome P450 2L1 OS=Panulirus argus GN=CYP2L1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.917e-13
Identity = 40/123 (32.52%), Postives = 61/123 (49.59%), Query Frame = 2
Query:   35 LVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNE 403
            L Y +A + E  R+    PL + H + ++  ++GY +P  T ++ ++    RDP  WE+P +F PE FL        R     L+ F  GRR C G S A   +   L+A+L  F F+ P  E
Sbjct:  346 LAYFEATIHEVHRIVSLVPLGVSHYTNQDTELAGYRLPKGTVVMSHLECCHRDPSYWEKPNEFYPEHFLDDQGKFVKRE---HLVNFSVGRRVCVGESLARMELFVFLSAILQNFTFSAPKGE 465          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C5142_DICDI (Probable cytochrome P450 514A2 OS=Dictyostelium discoideum GN=cyp514a2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 5.917e-13
Identity = 47/146 (32.19%), Postives = 75/146 (51.37%), Query Frame = 2
Query:   11 VNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVW-EEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALL-HGFDFATPSNEPVDMGEALGLSIQ 442
            ++ SD     Y+ +I+ E  R Y + PL  P+ + E+  + GY +   TQ+  N+         W E+  +F+PERF T  + ++ +G    LL FG+G R CPG  F  +   FTL  LL   +    P++ P+D    +GLS+Q
Sbjct:  350 ISFSDHSKYPYIISIMNETYRYYASVPLPEPNMTTEDIEVDGYKIAKGTQIYKNIRGTLISKEFWGEDALEFKPERFKT--QTLNQKG----LLHFGAGPRGCPGARFT-ECFFFTLMVLLFKNYKLQNPNDNPIDDRGDVGLSMQ 488          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP343_HUMAN (Cytochrome P450 3A43 OS=Homo sapiens GN=CYP3A43 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.728e-13
Identity = 43/131 (32.82%), Postives = 69/131 (52.67%), Query Frame = 2
Query:    2 KRQVNESDIKNLVYLQAILKEAMRLYP--ASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKD-IDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDF 385
            K  V    +  + YL  ++ E +RL+P  +    +  K IE   I+G  +P    +++ ++ L  DP+ W EP KF PERF  ++KD ID+    +  +PFG+G R C G+ FAL  ++  +   L  F F
Sbjct:  342 KAPVTYDALVQMEYLDMVVNETLRLFPVVSRVTRVCKKDIE---INGVFIPKGLAVMVPIYALHHDPKYWTEPEKFCPERFSKKNKDSIDL----YRYIPFGAGPRNCIGMRFALTNIKLAVIRALQNFSF 465          
The following BLAST results are available for this feature:
BLAST of CX308650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 392
Match NameE-valueIdentityDescription
CP21A_CANLU3.469e-1336.13Steroid 21-hydroxylase OS=Canis lupus GN=CYP21 PE=... [more]
CP21A_CANFA3.469e-1336.13Steroid 21-hydroxylase OS=Canis familiaris GN=CYP2... [more]
CP18A_DROME3.469e-1329.46Cytochrome P450 18a1 OS=Drosophila melanogaster GN... [more]
CP3A9_RAT4.531e-1328.95Cytochrome P450 3A9 OS=Rattus norvegicus GN=Cyp3a9... [more]
CP2DQ_MOUSE4.531e-1328.47Cytochrome P450 2D26 OS=Mus musculus GN=Cyp2d26 PE... [more]
CP3AI_RAT5.917e-1333.59Cytochrome P450 3A18 OS=Rattus norvegicus GN=Cyp3a... [more]
CP3A1_RAT5.917e-1335.54Cytochrome P450 3A1 OS=Rattus norvegicus GN=Cyp3a1... [more]
CP2L1_PANAR5.917e-1332.52Cytochrome P450 2L1 OS=Panulirus argus GN=CYP2L1 P... [more]
C5142_DICDI5.917e-1332.19Probable cytochrome P450 514A2 OS=Dictyostelium di... [more]
CP343_HUMAN7.728e-1332.82Cytochrome P450 3A43 OS=Homo sapiens GN=CYP3A43 PE... [more]

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Properties
Property NameValue
Genbank descriptionC21002C11Rv AbsLeaSub1 Citrus clementina cDNA clone C21002C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308650 ID=CX308650; Name=CX308650; organism=Citrus clementina; type=EST; length=459bp
GAAAAGGCAAGTGAATGAGTCAGATATAAAGAATTTAGTTTACTTGCAAG
CCATTCTCAAAGAAGCAATGCGTTTGTATCCTGCTTCGCCACTCTCAATT
CCACACAAGTCTATAGAAGAGTGCACGATTAGTGGTTATAATGTCCCTAC
CAGCACACAACTTGTTATCAATGTTTGGAAGCTTCAACGTGATCCACGTG
TCTGGGAAGAGCCTTGTAAGTTTCAGCCAGAAAGATTTTTGACAAGGCAC
AAGGATATTGACGTCAGAGGACAAAATTTTGAATTGTTACCTTTTGGTAG
TGGTAGAAGAGCTTGTCCTGGAGTTTCATTTGCCCTCCAAGTTATGGAAT
TTACACTTGCTGCTTTACTTCATGGCTTTGATTTTGCAACCCCATCAAAT
GAACCGGTGGACATGGGAGAGGCACTAGGGTTGAGTATCCAGAAAGCTAG
ACCACTTGA
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