CX308650

Overview
NameCX308650
Unique NameCX308650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP2DP_PIG (Vitamin D(3) 25-hydroxylase OS=Sus scrofa GN=CYP2D25 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 7.728e-13
Identity = 40/137 (29.20%), Postives = 65/137 (47.45%), Query Frame = 2
Query:    5 RQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRG---QNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEP 406
            RQ    D   + +  A+L E  R     PL + H +  +  + G+ +P  T L+ N+  + +D  VW++P +F PE FL      D +G   +    +PF +GRR+C G   A   +      LL  F F+ P+ +P
Sbjct:  346 RQPEIKDQALMPFTLAVLHEVQRFGDIVPLGVAHMTSCDIEVQGFLIPKGTTLITNLTSVLKDETVWKKPFRFYPEHFL------DAQGRFTKQEAFMPFSAGRRSCLGEPLARMELFLFFTTLLQAFSFSVPTGQP 476          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP137_MYCTU (Putative cytochrome P450 137 OS=Mycobacterium tuberculosis GN=cyp137 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.728e-13
Identity = 38/122 (31.15%), Postives = 66/122 (54.10%), Query Frame = 2
Query:   41 YLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEP 406
            +  A++ E +R+ P +PL+    + +  TI GY V   T++V+++  + R   V+E P +F+PERFL        R Q +  +PFG G + C G +F+++ +   L  LL   +F    +EP
Sbjct:  338 FTTAVINETLRVRPPAPLTA-RVAAQPLTIGGYRVEAGTRIVVHIIAINRSAEVYEHPHEFRPERFL------GTRPQTYAWVPFGGGVKRCLGANFSMRELITVLHVLLREGEFTAVDDEP 452          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C508B_DICDI (Probable cytochrome P450 508B1 OS=Dictyostelium discoideum GN=cyp508b1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 7.728e-13
Identity = 44/143 (30.77%), Postives = 69/143 (48.25%), Query Frame = 2
Query:   20 SDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISG--YNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVDMGEALGLSIQ 442
            SD     YL AI+KE +RL P  P  +PH+S  +  I    Y +P  +Q+++N   L  + + +E P +F P RFL ++ D          +PFG G R C G+  A      + + +L  F+       PV   E  GL+++
Sbjct:  339 SDRPKTPYLNAIIKEILRLNPVGPFGLPHRSSNDIVIGNGKYFIPKDSQILVNYRGLGFNEKYFENPSQFDPSRFLNKNND--------AYMPFGVGDRKCVGLQLAGDEQYLSFSNILLNFNLKN-IGTPVSDYEEFGLTLK 472          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP4S3_DROME (Probable cytochrome P450 4s3 OS=Drosophila melanogaster GN=Cyp4s3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12
Identity = 37/119 (31.09%), Postives = 64/119 (53.78%), Query Frame = 2
Query:   29 KNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDF 385
            +++ YL+A++KE +R+YP+ P     K +E+  +    VP    +   ++ L RDP+ + +P +F P+RFL   K +      F    F +G R C G  FA+  ++ +LA LL  + F
Sbjct:  346 ESMPYLEAVIKETLRIYPSVPF-FSRKVLEDLEVGKLTVPKGASISCLIYMLHRDPKNFPDPERFDPDRFLVNEKQM----HPFAFAAFSAGPRNCIGQKFAMLELKTSLAMLLRSYRF 459          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP3AP_MOUSE (Cytochrome P450 3A25 OS=Mus musculus GN=Cyp3a25 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12
Identity = 41/127 (32.28%), Postives = 71/127 (55.91%), Query Frame = 2
Query:    2 KRQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHK-DIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGF 379
            K  V    + ++ YL  ++ E++RLYP + + +   S ++  I+G  +P  T ++I ++ L R+P  W EP +F PERF   +K +ID     +  +PFG+G R C G+ FAL  ++  +  +L  F
Sbjct:  342 KAPVTYDALMDMEYLDMVVNESLRLYPIA-IRLERVSKKDVEINGVFIPKGTVVMIPIYPLHRNPEYWPEPQEFCPERFSKENKGNID----PYIYMPFGNGPRNCIGMRFALISIKLAVIGVLQNF 463          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP3AF_CAVPO (Cytochrome P450 3A15 OS=Cavia porcellus GN=CYP3A15 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12
Identity = 45/140 (32.14%), Postives = 72/140 (51.43%), Query Frame = 2
Query:   41 YLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKD-IDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVDMGEALGLSIQKARPL 457
            YL  ++ E +RLYP +   I   S ++  I+G + P  T ++I  + L RD + W EP +F+PERF  ++K+ ID     +  +PFG+G R C G   AL  ++  L  LL  F F       + +  +    +Q  +PL
Sbjct:  355 YLDMVVNETLRLYPVAN-RIERMSKKDFEINGMSFPKGTLVMIPSFALHRDSKYWPEPDEFRPERFSKKNKENID----PYIYMPFGNGPRNCIGRRMALMNLKLALIRLLQNFSFYPCKETQIPLRLSSEALLQPEKPL 489          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C513E_DICDI (Probable cytochrome P450 513E1 OS=Dictyostelium discoideum GN=cyp513e1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12
Identity = 41/137 (29.93%), Postives = 69/137 (50.36%), Query Frame = 2
Query:   32 NLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVDMGEALGLSIQ 442
            ++ YL  ++KE  RLY    + +PH + E+  I GY +   TQ++ NV+      + +     F PERF+    +    G    L+ FG+G R C G S A   +   LA L++ + F  P+ EP++   + G++ Q
Sbjct:  356 SIPYLSLVMKEVYRLYSVILIGLPHITSEDVEIEGYKIAKGTQIIQNVFSTHLCEKTFPMSKSFIPERFIETGSNNMFGGGQTNLVHFGTGVRDCVGKSLADCEIFTVLATLINRYQFINPTLEPLNDIGSFGIAYQ 492          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C513B_DICDI (Probable cytochrome P450 513B1 OS=Dictyostelium discoideum GN=cyp513b1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.009e-12
Identity = 44/135 (32.59%), Postives = 70/135 (51.85%), Query Frame = 2
Query:   41 YLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPS-NEPVDMGEALGLSIQ 442
            YL   LKE  R +PA+P   PH++ +E  I GY +   T +  N++  QR    + +P +F PER+     + D   Q   L+ FG+G R C G S A   +   +A++L+ ++F  P+ + P D     GL+ Q
Sbjct:  349 YLSLALKENYRKHPAAPFGAPHETTQETVIEGYTIAKGTMIFQNIYATQRSDTFYSQPDEFIPERW-----NGDENSQT--LISFGTGIRDCIGKSLAYNEIFTIIASVLNRYEFINPNPSIPFDDNGIPGLTTQ 476          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: KO1_ARATH (Ent-kaurene oxidase OS=Arabidopsis thaliana GN=KO1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 42/149 (28.19%), Postives = 74/149 (49.66%), Query Frame = 2
Query:   17 ESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLT--RHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVDMGEALGLSIQKARPL 457
            E  +  + YL  +  E +R Y  +PL     + E+  I GY+VP  +++ IN++    D + WE P  + PERFL   +++  D+     + + FG+G+R C G   A  +    +  L+  F++     E  ++ +  GL+ QK  PL
Sbjct:  357 EEQLSQVPYLNGVFHETLRKYSPAPLVPIRYAHEDTQIGGYHVPAGSEIAINIYGCNMDKKRWERPEDWWPERFLDDGKYETSDLH----KTMAFGAGKRVCAGALQASLMAGIAIGRLVQEFEWKLRDGEEENV-DTYGLTSQKLYPL 500          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP3AJ_CAPAE (Cytochrome P450 3A19 (Fragment) OS=Capra aegagrus GN=CYP3A19 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 38/116 (32.76%), Postives = 65/116 (56.03%), Query Frame = 2
Query:   41 YLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQN-FELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDF 385
            YL  ++ E +R++P +   +     ++  I G ++P  T +++ ++ L  +P  W EP +F+PERF  ++KD    G N +  LPFG+G R C G+ FAL  ++  L  +L  F F
Sbjct:   66 YLDMVVNETLRMFPIAG-RLERLCKKDVEIHGVSIPKGTTVMVPLFVLHNNPEFWPEPEEFRPERFSKKNKD----GINPYVYLPFGTGPRNCVGMRFALMNIKLALVRILQNFSF 176          
The following BLAST results are available for this feature:
BLAST of CX308650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 392
Match NameE-valueIdentityDescription
CP2DP_PIG7.728e-1329.20Vitamin D(3) 25-hydroxylase OS=Sus scrofa GN=CYP2D... [more]
CP137_MYCTU7.728e-1331.15Putative cytochrome P450 137 OS=Mycobacterium tube... [more]
C508B_DICDI7.728e-1330.77Probable cytochrome P450 508B1 OS=Dictyostelium di... [more]
CP4S3_DROME1.009e-1231.09Probable cytochrome P450 4s3 OS=Drosophila melanog... [more]
CP3AP_MOUSE1.009e-1232.28Cytochrome P450 3A25 OS=Mus musculus GN=Cyp3a25 PE... [more]
CP3AF_CAVPO1.009e-1232.14Cytochrome P450 3A15 OS=Cavia porcellus GN=CYP3A15... [more]
C513E_DICDI1.009e-1229.93Probable cytochrome P450 513E1 OS=Dictyostelium di... [more]
C513B_DICDI1.009e-1232.59Probable cytochrome P450 513B1 OS=Dictyostelium di... [more]
KO1_ARATH1.318e-1228.19Ent-kaurene oxidase OS=Arabidopsis thaliana GN=KO1... [more]
CP3AJ_CAPAE1.318e-1232.76Cytochrome P450 3A19 (Fragment) OS=Capra aegagrus ... [more]

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Properties
Property NameValue
Genbank descriptionC21002C11Rv AbsLeaSub1 Citrus clementina cDNA clone C21002C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308650 ID=CX308650; Name=CX308650; organism=Citrus clementina; type=EST; length=459bp
GAAAAGGCAAGTGAATGAGTCAGATATAAAGAATTTAGTTTACTTGCAAG
CCATTCTCAAAGAAGCAATGCGTTTGTATCCTGCTTCGCCACTCTCAATT
CCACACAAGTCTATAGAAGAGTGCACGATTAGTGGTTATAATGTCCCTAC
CAGCACACAACTTGTTATCAATGTTTGGAAGCTTCAACGTGATCCACGTG
TCTGGGAAGAGCCTTGTAAGTTTCAGCCAGAAAGATTTTTGACAAGGCAC
AAGGATATTGACGTCAGAGGACAAAATTTTGAATTGTTACCTTTTGGTAG
TGGTAGAAGAGCTTGTCCTGGAGTTTCATTTGCCCTCCAAGTTATGGAAT
TTACACTTGCTGCTTTACTTCATGGCTTTGATTTTGCAACCCCATCAAAT
GAACCGGTGGACATGGGAGAGGCACTAGGGTTGAGTATCCAGAAAGCTAG
ACCACTTGA
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