CX308650

Overview
NameCX308650
Unique NameCX308650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP3A6_RABIT (Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CYP3A6 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 45/141 (31.91%), Postives = 76/141 (53.90%), Query Frame = 2
Query:   41 YLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDF--ATPSNEPVDMGEALGLSIQKARPL 457
            YL  ++ E +RLYP +   +     ++  I+G  +P  T +++  + L RDP+ W EP +F+PERF  ++KD       +   PFG+G R C G+ FAL  ++  L  L+  F F     +  P+ +G+  GL +Q  +P+
Sbjct:  353 YLDMVVNETLRLYPIAG-RLERVCKKDVDINGTFIPKGTIVMMPTYALHRDPQHWTEPDEFRPERFSKKNKD---NINPYIYHPFGAGPRNCLGMRFALMNIKLALVRLMQNFSFKLCKETQVPLKLGKQ-GL-LQPEKPI 487          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP2K1_ONCMY (Cytochrome P450 2K1 OS=Oncorhynchus mykiss GN=cyp2k1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 43/148 (29.05%), Postives = 66/148 (44.59%), Query Frame = 2
Query:    5 RQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATP---SNEPVDMGEALGLSI 439
            RQ    D KNL Y  A++ E  RL    P+S+PH +  + T  GY +   T ++  +  + +D   WE P  F P  FL        R      + F +GRR C G   A   +     +LL  F F+ P   + + +D+   LG ++
Sbjct:  347 RQTLVEDRKNLPYTDAVIHETQRLANIVPMSVPHTTSRDVTFQGYFIKKGTSVIPLLTSVLQDDSEWESPNTFNPSHFLDEQGGFVKRD---AFMAFSAGRRVCLGEGLARMELFLFFTSLLQRFRFSPPPGVTEDDLDLTPLLGFTL 491          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP2DA_MOUSE (Cytochrome P450 2D10 OS=Mus musculus GN=Cyp2d10 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.318e-12
Identity = 38/134 (28.36%), Postives = 66/134 (49.25%), Query Frame = 2
Query:    5 RQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEP 406
            R    +D   + Y  A++ E  R    +PL++P  +  +  +  + +P  + L+ N+  + +D  VWE+P +F PE FL       V+ + F  +PF +GRR+C G   A   +      LL  F F+ P+ +P
Sbjct:  346 RHPEMADQARMPYTNAVIHEVQRFGDIAPLNLPRITSRDIEVQDFLIPKGSILIPNMSSVLKDETVWEKPLRFHPEHFLDAQGHF-VKPEAF--MPFSAGRRSCLGEPLARMELFLFFTCLLQHFSFSVPNGQP 476          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: THAS_BOVIN (Thromboxane-A synthase OS=Bos taurus GN=TBXAS1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.722e-12
Identity = 39/119 (32.77%), Postives = 58/119 (48.74%), Query Frame = 2
Query:   29 KNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDF 385
            + L YL  ++KE +R+YP +       + ++C + G  +P    L   V  L  DP  W  P  F PERF     +   R + +  LPFG+G R+C GV   L  ++ TL  +L  F F
Sbjct:  388 EGLPYLDMVIKETLRMYPPA-FRFTRVAAQDCEVLGQRIPAGAVLETAVGALHYDPEHWPNPENFNPERFTA---EAQQRRRPYTYLPFGAGPRSCLGVRLGLLELKLTLLHILRKFRF 502          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP3AD_MOUSE (Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.722e-12
Identity = 40/113 (35.40%), Postives = 62/113 (54.87%), Query Frame = 2
Query:   41 YLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGF 379
            YL  ++ E +RLYP +   +      +  I+G  +P  T ++I  + L +DP+ W EP +F+PERF  +++D       +  LPFGSG R C G+ FAL  M+  L  +L  F
Sbjct:  355 YLDMVVNETLRLYPIAG-RLERVCKTDVEINGLFIPKGTVVMIPTFALHKDPKYWPEPEEFRPERFSKKNQD---SINPYMYLPFGSGPRNCIGMRFALINMKVALVRVLQNF 463          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP2D9_MOUSE (Cytochrome P450 2D9 OS=Mus musculus GN=Cyp2d9 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.722e-12
Identity = 38/134 (28.36%), Postives = 66/134 (49.25%), Query Frame = 2
Query:    5 RQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEP 406
            R    +D  ++ Y  A++ E  R     P+++P  +  +  +  + +P  T L+ N+  + +D  VWE+P +F PE FL       V+ + F  +PF +GRR+C G + A   +      LL  F F+ P  +P
Sbjct:  346 RHPEMADQAHMPYTNAVIHEVQRFGDIVPVNLPRITSHDIEVQDFLIPKGTILLPNMSSMLKDESVWEKPLRFHPEHFLDAQGHF-VKPEAF--MPFSAGRRSCLGEALARMELFLFFTCLLQRFSFSVPDGQP 476          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C518B_DICDI (Probable cytochrome P450 518B1 OS=Dictyostelium discoideum GN=cyp518b1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.722e-12
Identity = 41/122 (33.61%), Postives = 63/122 (51.64%), Query Frame = 2
Query:   50 AILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVW-EEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVD 412
            A LKE +RL PA+P S+P  S E   + G  +P  T L  +++ + RD + W E   KF PERFLT     D    N+   P+G G+R C G +F+   +   L  ++  F   +   +P++
Sbjct:  355 ATLKEVLRLIPATPFSVPRMSNEGFEVDGIKIPKGTYLFPSMYSIFRDEKYWGENANKFYPERFLT-----DSHSNNY--FPYGVGKRMCLGSNFSQHELYICLTNIVLNFKIKSIDGKPLN 469          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C5144_DICDI (Probable cytochrome P450 514A4 OS=Dictyostelium discoideum GN=cyp514a4 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.722e-12
Identity = 39/145 (26.90%), Postives = 77/145 (53.10%), Query Frame = 2
Query:   11 VNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVW-EEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVDMGEALGLSIQ 442
            ++ +D     Y+ +++ E+ R   + P++ P+K+ E+  ++GY +   T ++ N+         W E+  +F+PERF  +++ ++ +G    L  FG+G RACPG  F        L  +L  F    P++ P+D+   +GL++Q
Sbjct:  352 ISFADHTKYPYIISVMNESYRYNSSVPITEPNKTTEDVEVNGYKIAKGTMIIKNLRGTHLSKEFWGEDALEFKPERF--KNQPLNQKG----LFHFGAGARACPGGRFTESFTFTFLVIMLKNFKIVNPTDIPIDVEGEVGLAMQ 490          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C508D_DICDI (Probable cytochrome P450 508D1 OS=Dictyostelium discoideum GN=cyp508d1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.722e-12
Identity = 38/148 (25.68%), Postives = 76/148 (51.35%), Query Frame = 2
Query:   11 VNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVDMGEAL-GLSIQKAR 451
            V  +D  +  Y  A +KE +RL   +P  +PH + ++  + G+ +P  + ++IN + L R+P+ + +P KF P RF+    D          +PFG+G R C G +  +  +   L+ +   F   + + + +D  + + GL+++ A+
Sbjct:  335 VTLNDRPSTPYTMACIKETIRLKAPAPFGLPHTTDQDIIVKGHFIPKDSMVLINFYSLGRNPKDFPDPLKFDPNRFIGSTPD--------SFMPFGTGPRNCIGQALGMDQIYLLLSNIFLNFKITSENGKKLDDTDYVSGLNLKPAK 474          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C5082_DICDI (Probable cytochrome P450 508A2 OS=Dictyostelium discoideum GN=cyp508a2-1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.722e-12
Identity = 41/148 (27.70%), Postives = 74/148 (50.00%), Query Frame = 2
Query:    2 KRQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTIS-GYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVDMGEALGLSIQ 442
            + +V  SD ++  ++ ++ KE +R  P SP  +P  +  +  ++ G  +P + Q++IN   L R+   +E P +F P RFL           N   +PF  G R C G +FA   +   L+ ++  F F +   +PVD  +  GL+++
Sbjct:  341 RNKVLLSDRQSTPFVVSLFKETLRYKPISPFGLPRSTTSDIILNNGQFIPKNAQILINYHALSRNEEYFENPNQFDPTRFLNSDS-------NPAFMPFSIGPRNCVGSNFAQDEIYIALSNMILNFKFKSIDGKPVDETQTYGLTLK 481          
The following BLAST results are available for this feature:
BLAST of CX308650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 392
Match NameE-valueIdentityDescription
CP3A6_RABIT1.318e-1231.91Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CY... [more]
CP2K1_ONCMY1.318e-1229.05Cytochrome P450 2K1 OS=Oncorhynchus mykiss GN=cyp2... [more]
CP2DA_MOUSE1.318e-1228.36Cytochrome P450 2D10 OS=Mus musculus GN=Cyp2d10 PE... [more]
THAS_BOVIN1.722e-1232.77Thromboxane-A synthase OS=Bos taurus GN=TBXAS1 PE=... [more]
CP3AD_MOUSE1.722e-1235.40Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE... [more]
CP2D9_MOUSE1.722e-1228.36Cytochrome P450 2D9 OS=Mus musculus GN=Cyp2d9 PE=1... [more]
C518B_DICDI1.722e-1233.61Probable cytochrome P450 518B1 OS=Dictyostelium di... [more]
C5144_DICDI1.722e-1226.90Probable cytochrome P450 514A4 OS=Dictyostelium di... [more]
C508D_DICDI1.722e-1225.68Probable cytochrome P450 508D1 OS=Dictyostelium di... [more]
C5082_DICDI1.722e-1227.70Probable cytochrome P450 508A2 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionC21002C11Rv AbsLeaSub1 Citrus clementina cDNA clone C21002C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308650 ID=CX308650; Name=CX308650; organism=Citrus clementina; type=EST; length=459bp
GAAAAGGCAAGTGAATGAGTCAGATATAAAGAATTTAGTTTACTTGCAAG
CCATTCTCAAAGAAGCAATGCGTTTGTATCCTGCTTCGCCACTCTCAATT
CCACACAAGTCTATAGAAGAGTGCACGATTAGTGGTTATAATGTCCCTAC
CAGCACACAACTTGTTATCAATGTTTGGAAGCTTCAACGTGATCCACGTG
TCTGGGAAGAGCCTTGTAAGTTTCAGCCAGAAAGATTTTTGACAAGGCAC
AAGGATATTGACGTCAGAGGACAAAATTTTGAATTGTTACCTTTTGGTAG
TGGTAGAAGAGCTTGTCCTGGAGTTTCATTTGCCCTCCAAGTTATGGAAT
TTACACTTGCTGCTTTACTTCATGGCTTTGATTTTGCAACCCCATCAAAT
GAACCGGTGGACATGGGAGAGGCACTAGGGTTGAGTATCCAGAAAGCTAG
ACCACTTGA
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