CX308650

Overview
NameCX308650
Unique NameCX308650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP2DG_CAVPO (Cytochrome P450 2D16 OS=Cavia porcellus GN=CYP2D16 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.542e-12
Identity = 36/132 (27.27%), Postives = 61/132 (46.21%), Query Frame = 2
Query:   20 SDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFE---LLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEP 406
            +D  ++ +  A++ E  R     P+ +PH +  +  + G+ +P  T L  N+  + +D  VWE+P  F P  FL      D  G+  +    +PF +G R C G   A   +     +LL  F F+ P  +P
Sbjct:  351 ADQAHMPFTNAVIHEVQRFADIVPMGVPHMTSRDTEVQGFLIPKGTMLFTNLSSVLKDETVWEKPLHFHPGHFL------DAEGRFVKREAFMPFSAGPRICLGEPLARMELFLFFTSLLQRFSFSVPEGQP 476          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP3AS_BOVIN (Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 8.545e-12
Identity = 35/115 (30.43%), Postives = 62/115 (53.91%), Query Frame = 2
Query:   41 YLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDF 385
            YL  ++ E +R++P +   +     ++  I G  +P  T +++ ++ L  +P +W EP +F+PERF   +KD       +  LPFG+G R C G+ FA+  ++  L  +L  F F
Sbjct:  355 YLDMVVNETLRMFPIAG-RLERVCKKDVEIHGVTIPKGTTVLVPLFVLHNNPELWPEPEEFRPERFSKNNKD---SINPYVYLPFGTGPRNCLGMRFAIMNIKLALVRILQNFSF 465          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP3A2_RAT (Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 8.545e-12
Identity = 43/123 (34.96%), Postives = 62/123 (50.41%), Query Frame = 2
Query:   26 IKNLVYLQAILKEAMRLYPASPL--SIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHK-DIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDF 385
            +  + YL  +L E +RLYP       +  K IE   + G  +P  + + I  + L  DP+ W +P +F PERF   +K  ID     +  LPFG+G R C G+ FAL  M+  L  +L  F F
Sbjct:  351 VMEMEYLDMVLNETLRLYPIGNRLERVCKKDIE---LDGLFIPKGSVVTIPTYALHHDPQHWPKPEEFHPERFSKENKGSIDP----YVYLPFGNGPRNCIGMRFALMNMKLALTKVLQNFSF 466          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP4CU_BLAGE (Cytochrome P450 4c21 OS=Blattella germanica GN=CYP4C21 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.116e-11
Identity = 38/124 (30.65%), Postives = 67/124 (54.03%), Query Frame = 2
Query:   20 SDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFAT 391
            +D+ N+ YL+ ++KE++RL+P S +    ++ ++  + GY +P  T +  +V  + R+P ++  P  F P+ FL    D  V    +  +PF +G R C G  FAL   +  L+ LL  + F T
Sbjct:  353 ADLNNMNYLERVIKESLRLHP-SVIYFVREAHQDFELGGYTIPAGTNIDFSVPFIHRNPEIFPNPRCFNPDNFL---PDRVVNRHPYAYIPFSAGPRNCIGQRFALLEEKVVLSYLLRHYRFRT 472          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP2BJ_MOUSE (Cytochrome P450 2B19 OS=Mus musculus GN=Cyp2b19 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.116e-11
Identity = 37/132 (28.03%), Postives = 63/132 (47.73%), Query Frame = 2
Query:   23 DIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATP-SNEPVDM 415
            D   + Y  A++ E  R    +P+ +PHK  ++    GY +P +T++   +     DPR +E+P  F PE FL  +  +     N   +PF +G+R C G   A   +      +L  F  A+P + E +D+
Sbjct:  343 DRTKMPYTDAVIHEIQRFTDLAPIGLPHKVTKDTLFRGYLIPKNTEVYPILSSALHDPRYFEQPDSFNPEHFLDANGALKT---NEAFMPFSTGKRICLGEGIARNELFLFFTTILQNFSLASPVAPENIDL 471          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP2A1_RAT (Cytochrome P450 2A1 OS=Rattus norvegicus GN=Cyp2a1 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.116e-11
Identity = 42/133 (31.58%), Postives = 60/133 (45.11%), Query Frame = 2
Query:    5 RQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQ---NFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATP 394
            RQ    D   + Y QA++ E  R    +PL IP + I+  T  G+ +P  T +   +  L  DP+ +  P  F P+ FL      D +GQ   N   LPF +G+R C G   A   +   L  +L  F F  P
Sbjct:  337 RQPQYEDHMKMPYTQAVINEIQRFSNLAPLGIPRRIIKNTTFRGFFLPKGTDVFPILGSLMTDPKFFPSPKDFDPQNFL------DDKGQLKKNAAFLPFSTGKRFCLGDGLAKMELFLLLTTILQNFRFKFP 463          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C5141_DICDI (Probable cytochrome P450 514A1 OS=Dictyostelium discoideum GN=cyp514a1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.116e-11
Identity = 38/145 (26.21%), Postives = 76/145 (52.41%), Query Frame = 2
Query:   11 VNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVW-EEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVDMGEALGLSIQ 442
            ++ +D     Y+ +++ E+ R   + P++ P+K+ E+  ++GY +   T ++ N+         W E+  +F+PERF  +++ +  +G    L  FG+G R CPG  F   +    L  +L  F    P++ P+D+   +GL++Q
Sbjct:  352 ISFADHTKYPYIISVMNESYRYNSSVPITEPNKTTEDVEVNGYKIAKGTMIIKNLRGTHLSKEFWGEDALEFKPERF--KNQPLYQKG----LFHFGAGPRGCPGGRFTESLTFTFLVIMLKNFKIVNPTDIPIDVEGEVGLAMQ 490          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP10_LYMST (Cytochrome P450 10 OS=Lymnaea stagnalis GN=CYP10 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.457e-11
Identity = 44/150 (29.33%), Postives = 74/150 (49.33%), Query Frame = 2
Query:   11 VNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRH-KDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVDMGEALGLSIQKARPL 457
            ++  D+  L  ++A++KE +RLYP +  S      E+  + GY +P  T +  N++ + RDP ++ EP    PER+L  +   +D   ++   L +G G R C G   A Q M  TL+ ++  F   T S    D+   L   +   RP+
Sbjct:  392 ISAEDLCKLPMVKAVVKETLRLYPIT-YSTSRNIAEDMELGGYTIPAGTHVQANLYGMYRDPSLFPEPEGILPERWLRMNGSQMDATIKSTSQLVWGHGARMCLGRRIAEQEMHITLSKIIQNF---TLSYNHDDVEPILNTMLTPDRPV 537          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C518A_DICDI (Probable cytochrome P450 518A1 OS=Dictyostelium discoideum GN=cyp518a1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.457e-11
Identity = 37/112 (33.04%), Postives = 61/112 (54.46%), Query Frame = 2
Query:   50 AILKEAMRLYPASPLSIPHKSIEECTISG--YNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGF 379
            A LKE +RLYP  P  +P +  +   I+G    +P  TQ++ +++ + RD   W+ P +F+PERFL    D D    N+   P+G G + C G+ F+   +  +L+ L+  F
Sbjct:  354 AALKEVLRLYPPVPFGVPRQVNQSFEINGGSLKIPKGTQIIQSLYSIFRDENYWDSPDQFKPERFL----DQDSHSNNY--FPYGIGVKNCIGMGFSQDELYISLSNLVLNF 459          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C4AE1_DROME (Cytochrome P450 4ae1 OS=Drosophila melanogaster GN=Cyp4ae1 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.457e-11
Identity = 40/125 (32.00%), Postives = 64/125 (51.20%), Query Frame = 2
Query:    5 RQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGF 379
            R V  SD   L YL  ++KE++RLYP  P ++     ++  I    +P  T +V+ +W+L RD  ++ +P  FQPER L        R   +  +PF +G R C G  FAL  M+  +  ++  +
Sbjct:  344 RGVILSDFATLPYLSCVVKESLRLYPPIP-AVARCLEKDLVIDEGYIPVGTNVVVLLWQLLRDEAIFTDPLVFQPERHLGEEAP---RLSPYSYIPFSAGPRNCIGQKFALLEMKTMVTKVIRHY 464          
The following BLAST results are available for this feature:
BLAST of CX308650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 392
Match NameE-valueIdentityDescription
CP2DG_CAVPO6.542e-1227.27Cytochrome P450 2D16 OS=Cavia porcellus GN=CYP2D16... [more]
CP3AS_BOVIN8.545e-1230.43Cytochrome P450 3A28 OS=Bos taurus GN=CYP3A28 PE=2... [more]
CP3A2_RAT8.545e-1234.96Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2... [more]
CP4CU_BLAGE1.116e-1130.65Cytochrome P450 4c21 OS=Blattella germanica GN=CYP... [more]
CP2BJ_MOUSE1.116e-1128.03Cytochrome P450 2B19 OS=Mus musculus GN=Cyp2b19 PE... [more]
CP2A1_RAT1.116e-1131.58Cytochrome P450 2A1 OS=Rattus norvegicus GN=Cyp2a1... [more]
C5141_DICDI1.116e-1126.21Probable cytochrome P450 514A1 OS=Dictyostelium di... [more]
CP10_LYMST1.457e-1129.33Cytochrome P450 10 OS=Lymnaea stagnalis GN=CYP10 P... [more]
C518A_DICDI1.457e-1133.04Probable cytochrome P450 518A1 OS=Dictyostelium di... [more]
C4AE1_DROME1.457e-1132.00Cytochrome P450 4ae1 OS=Drosophila melanogaster GN... [more]

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Properties
Property NameValue
Genbank descriptionC21002C11Rv AbsLeaSub1 Citrus clementina cDNA clone C21002C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308650 ID=CX308650; Name=CX308650; organism=Citrus clementina; type=EST; length=459bp
GAAAAGGCAAGTGAATGAGTCAGATATAAAGAATTTAGTTTACTTGCAAG
CCATTCTCAAAGAAGCAATGCGTTTGTATCCTGCTTCGCCACTCTCAATT
CCACACAAGTCTATAGAAGAGTGCACGATTAGTGGTTATAATGTCCCTAC
CAGCACACAACTTGTTATCAATGTTTGGAAGCTTCAACGTGATCCACGTG
TCTGGGAAGAGCCTTGTAAGTTTCAGCCAGAAAGATTTTTGACAAGGCAC
AAGGATATTGACGTCAGAGGACAAAATTTTGAATTGTTACCTTTTGGTAG
TGGTAGAAGAGCTTGTCCTGGAGTTTCATTTGCCCTCCAAGTTATGGAAT
TTACACTTGCTGCTTTACTTCATGGCTTTGATTTTGCAACCCCATCAAAT
GAACCGGTGGACATGGGAGAGGCACTAGGGTTGAGTATCCAGAAAGCTAG
ACCACTTGA
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