CX308650

Overview
NameCX308650
Unique NameCX308650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C13A3_CAEEL (Putative cytochrome P450 CYP13A3 OS=Caenorhabditis elegans GN=cyp-13A3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.457e-11
Identity = 37/129 (28.68%), Postives = 63/129 (48.84%), Query Frame = 2
Query:    8 QVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVW-EEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFAT 391
            +V    +  L Y++ ++KE +RLYP + +    K ++  T+ G  +   T +  + W L  DP+ W E   +F+PER+ +  +    +G     LPFG G R C G+  A    +  LA +L  +   T
Sbjct:  364 EVTFDQLSKLKYMECVIKETLRLYPLASIVHNRKCMKSTTVLGMKIEEGTNVQADTWTLHYDPKFWGENANEFKPERWESGDEQAVAKG---AYLPFGLGPRICIGMRLAYMEEKMLLAQILKKYSLET 489          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CPXB_BACME (Bifunctional P-450/NADPH-P450 reductase OS=Bacillus megaterium GN=CYP102A1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.904e-11
Identity = 43/137 (31.39%), Postives = 69/137 (50.36%), Query Frame = 2
Query:   26 IKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCK-FQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVDMGEALGL 433
            +K L Y+  +L EA+RL+P +P    +   +      Y +    +L++ + +L RD  +W +  + F+PERF        +    F+  PFG+G+RAC G  FAL      L  +L  FDF   +N  +D+ E L L
Sbjct:  309 VKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERF---ENPSAIPQHAFK--PFGNGQRACIGQQFALHEATLVLGMMLKHFDFEDHTNYELDIKETLTL 440          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP4D1_DROSI (Cytochrome P450 4d1 OS=Drosophila simulans GN=Cyp4d1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.904e-11
Identity = 42/132 (31.82%), Postives = 70/132 (53.03%), Query Frame = 2
Query:   26 IKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQN---FELLPFGSGRRACPGVSFALQVMEFTLAALLHGF--DFATPSNEP 406
            +  L Y+   +KE +R+YP+ PL +  K +E+C I+G  +P  T + I+   L R   ++ EP  F+PERF     D+    +    +  +PF +G R C G  FA+  ++  +A +L  +  DF   S+EP
Sbjct:  363 LNQLHYVDLCVKETLRMYPSVPL-LGRKVLEDCEINGKLIPAGTNIGISPLYLGRREELFSEPNSFKPERF-----DVVTTAEKLNPYAYIPFSAGPRNCIGQKFAMLEIKAIVANVLRHYEVDFVGDSSEP 488          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP4D1_DROME (Cytochrome P450 4d1 OS=Drosophila melanogaster GN=Cyp4d1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.904e-11
Identity = 42/132 (31.82%), Postives = 70/132 (53.03%), Query Frame = 2
Query:   26 IKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQN---FELLPFGSGRRACPGVSFALQVMEFTLAALLHGF--DFATPSNEP 406
            +  L Y+   +KE +R+YP+ PL +  K +E+C I+G  +P  T + I+   L R   ++ EP  F+PERF     D+    +    +  +PF +G R C G  FA+  ++  +A +L  +  DF   S+EP
Sbjct:  363 LNQLHYVDLCVKETLRMYPSVPL-LGRKVLEDCEINGKLIPAGTNIGISPLYLGRREELFSEPNSFKPERF-----DVVTTAEKLNPYAYIPFSAGPRNCIGQKFAMLEIKAIVANVLRHYEVDFVGDSSEP 488          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP4B1_HUMAN (Cytochrome P450 4B1 OS=Homo sapiens GN=CYP4B1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.904e-11
Identity = 40/132 (30.30%), Postives = 64/132 (48.48%), Query Frame = 2
Query:   23 DIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFA-TPSNEPVDM 415
            D+  + YL   +KE+ RLYP  P      S     + G ++P  + + ++++ L R+  VW +P  F   RF T +     +   F  +PF +G R C G  FA+  M+   A  L  F+F+  PS  P+ M
Sbjct:  359 DLGKMTYLTMCIKESFRLYPPVPQVYRQLSKPVTFVDGRSLPAGSLISMHIYALHRNSAVWPDPEVFDSLRFSTENAS---KRHPFAFMPFSAGPRNCIGQQFAMSEMKVVTAMCLLRFEFSLDPSRLPIKM 487          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP2S1_MOUSE (Cytochrome P450 2S1 OS=Mus musculus GN=Cyp2s1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.904e-11
Identity = 41/126 (32.54%), Postives = 58/126 (46.03%), Query Frame = 2
Query:   20 SDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFE-LLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATP 394
            SD   L Y  A+L EA RL    P+ +PH         GY +P  T++   +  +  DP V++ P +F P RFL    D D R +  E  LP+  G+R C G   A   +     ++L  F   TP
Sbjct:  346 SDRVRLPYTDAVLHEAQRLLALVPMGMPHTITRTTCFRGYTLPKGTEVFPLIGSILHDPAVFQNPGEFHPGRFL----DEDGRLRKHEAFLPYSLGKRVCLGEGLARAELWLFFTSILQAFSLETP 467          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP2B9_MOUSE (Cytochrome P450 2B9 OS=Mus musculus GN=Cyp2b9 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.904e-11
Identity = 37/124 (29.84%), Postives = 61/124 (49.19%), Query Frame = 2
Query:   23 DIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATP 394
            D   + Y  A++ E  R     P+ +PHK I++    GY +P +T++   +     DP+ +E+P KF PE+FL  +  +    +    LPF +G+R C G S A   +      +L  F  A+P
Sbjct:  342 DRTKMPYTDAVIHEIQRFSDLVPIGLPHKVIKDTLFRGYLLPKNTEVYPVLSSALHDPQYFEQPDKFNPEQFLDANGALK---KCEAFLPFSTGKRICLGESIARNELFIFFTTILQNFSVASP 462          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C5084_DICDI (Probable cytochrome P450 508A4 OS=Dictyostelium discoideum GN=cyp508a4 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.904e-11
Identity = 39/154 (25.32%), Postives = 73/154 (47.40%), Query Frame = 2
Query:    2 KRQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISG-YNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFL------TRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVDMGEALGLSIQ 442
            K +V  +D ++L Y+ A++KE +R  P +P  +P   + E TI   Y +P   Q++IN   +  + + ++   +F P RFL      T   +      N   +PF  G R C G+ FA   +    A ++  F   +   + +D   + G++++
Sbjct:  334 KDKVELNDRQSLPYVVAVIKETLRFKPVTPFGVPRSCVNEITIDEKYFIPKGAQVIINYPSIFENEKYFKNANQFDPSRFLQTTTTNTASNEESSFNSNLAFIPFSIGPRNCVGMQFAQDELFLAFANIVLNFTIKSVDGKKIDETISYGVTLK 487          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C4D14_DROME (Probable cytochrome P450 4d14 OS=Drosophila melanogaster GN=Cyp4d14 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.904e-11
Identity = 36/116 (31.03%), Postives = 64/116 (55.17%), Query Frame = 2
Query:   35 LVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFD 382
            L YL+ ++KE++RL+P+ P+ I     ++  + G  +P  + ++I ++  QRDP  + +P KF P+RF    K        F   PF +G R C G  FA+  M+ T++ ++  F+
Sbjct:  365 LKYLECVIKESLRLFPSVPI-IGRYISQDTVLDGKLIPADSNVIILIYHAQRDPDYFPDPEKFIPDRFSMERKG---EISPFAYTPFSAGPRNCIGQKFAMLEMKSTISKMVRHFE 476          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP2BC_RAT (Cytochrome P450 2B12 OS=Rattus norvegicus GN=Cyp2b12 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.486e-11
Identity = 37/132 (28.03%), Postives = 65/132 (49.24%), Query Frame = 2
Query:   23 DIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATP-SNEPVDM 415
            D   + Y  A++ E  R    +P+ +PH+  ++    GY +P +T++   +     DPR +E+P  F PE FL  +  +    ++   LPF +G+R C G   A   +     A+L  F  A+P + E +D+
Sbjct:  343 DRTKMPYTDAVIHEIQRFADLTPIGLPHRVTKDTVFRGYLLPKNTEVYPILSSALHDPRYFEQPDTFNPEHFLDANGALK---KSEAFLPFSTGKRICLGEGIARNELFIFFTAILQNFTLASPVAPEDIDL 471          
The following BLAST results are available for this feature:
BLAST of CX308650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 392
Match NameE-valueIdentityDescription
C13A3_CAEEL1.457e-1128.68Putative cytochrome P450 CYP13A3 OS=Caenorhabditis... [more]
CPXB_BACME1.904e-1131.39Bifunctional P-450/NADPH-P450 reductase OS=Bacillu... [more]
CP4D1_DROSI1.904e-1131.82Cytochrome P450 4d1 OS=Drosophila simulans GN=Cyp4... [more]
CP4D1_DROME1.904e-1131.82Cytochrome P450 4d1 OS=Drosophila melanogaster GN=... [more]
CP4B1_HUMAN1.904e-1130.30Cytochrome P450 4B1 OS=Homo sapiens GN=CYP4B1 PE=1... [more]
CP2S1_MOUSE1.904e-1132.54Cytochrome P450 2S1 OS=Mus musculus GN=Cyp2s1 PE=2... [more]
CP2B9_MOUSE1.904e-1129.84Cytochrome P450 2B9 OS=Mus musculus GN=Cyp2b9 PE=2... [more]
C5084_DICDI1.904e-1125.32Probable cytochrome P450 508A4 OS=Dictyostelium di... [more]
C4D14_DROME1.904e-1131.03Probable cytochrome P450 4d14 OS=Drosophila melano... [more]
CP2BC_RAT2.486e-1128.03Cytochrome P450 2B12 OS=Rattus norvegicus GN=Cyp2b... [more]

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Properties
Property NameValue
Genbank descriptionC21002C11Rv AbsLeaSub1 Citrus clementina cDNA clone C21002C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308650 ID=CX308650; Name=CX308650; organism=Citrus clementina; type=EST; length=459bp
GAAAAGGCAAGTGAATGAGTCAGATATAAAGAATTTAGTTTACTTGCAAG
CCATTCTCAAAGAAGCAATGCGTTTGTATCCTGCTTCGCCACTCTCAATT
CCACACAAGTCTATAGAAGAGTGCACGATTAGTGGTTATAATGTCCCTAC
CAGCACACAACTTGTTATCAATGTTTGGAAGCTTCAACGTGATCCACGTG
TCTGGGAAGAGCCTTGTAAGTTTCAGCCAGAAAGATTTTTGACAAGGCAC
AAGGATATTGACGTCAGAGGACAAAATTTTGAATTGTTACCTTTTGGTAG
TGGTAGAAGAGCTTGTCCTGGAGTTTCATTTGCCCTCCAAGTTATGGAAT
TTACACTTGCTGCTTTACTTCATGGCTTTGATTTTGCAACCCCATCAAAT
GAACCGGTGGACATGGGAGAGGCACTAGGGTTGAGTATCCAGAAAGCTAG
ACCACTTGA
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