CX308650

Overview
NameCX308650
Unique NameCX308650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C12C1_DROME (Probable cytochrome P450 12c1, mitochondrial OS=Drosophila melanogaster GN=Cyp12c1 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 2.486e-11
Identity = 42/125 (33.60%), Postives = 66/125 (52.80%), Query Frame = 2
Query:   23 DIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKD------IDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGF 379
            D+K+L YL+A++KE++RLYP +       +  +  + GY +P  T+L++    L +D R++    +F PER+L R  D      ++     F  LPFG G R C G       ME T+A L+  F
Sbjct:  368 DMKSLPYLRAVIKESLRLYPVT-FGNARSAGADVVLDGYRIPKGTKLLMTNSFLLKDDRLYPRAKEFIPERWLRRKDDDKSDVLMNKDLNAFIYLPFGFGPRMCVGKRIVDLEMELTVANLVRNF 491          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C12A2_MUSDO (Cytochrome P450 CYP12A2 OS=Musca domestica GN=CYP12A2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.486e-11
Identity = 42/133 (31.58%), Postives = 66/133 (49.62%), Query Frame = 2
Query:    8 QVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQ---------NFELLPFGSGRRACPGVSFALQVMEFTLAALLHGF 379
            + NE+  KN+ YL+A +KE++R+YP + +        +  ISGY VP  T + +N   L +D   +    +F PER+L   K+ +   +          F  LPFG G R+C G   A   +E  +A L+  F
Sbjct:  373 EFNEAVFKNMPYLRACIKESLRVYPLT-VGNARTQANDVVISGYRVPKGTLISMNSVTLIKDDAHYPRASEFLPERWLRASKENEKSAECPHALKASSPFVYLPFGFGSRSCIGRRIAEMELELGIARLIRNF 504          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP4E5_DROMT (Cytochrome P450 4e5, mitochondrial OS=Drosophila mettleri GN=Cyp4e5 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 44/135 (32.59%), Postives = 68/135 (50.37%), Query Frame = 2
Query:    5 RQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPV 409
            R     +I  + YL   +KEA R+YP+ P  I   + ++  I G  +P  T L + +  L  D RV+EEP +F PERF  +      +   FE +PF +G R C G  FAL  ++  ++ L+  F+     +E V
Sbjct:  347 RDATFQEISAMKYLDLFIKEAQRVYPSVPF-IGRYTDKDYNIHGTIMPKGTTLNLGIIVLGYDDRVFEEPHRFYPERFEKQ------KPGPFEYVPFSAGPRNCIGQKFALLELKTVISKLVRTFEVLPAVDELV 474          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP4E1_DROME (Probable cytochrome P450 4e1 OS=Drosophila melanogaster GN=Cyp4e1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 45/135 (33.33%), Postives = 70/135 (51.85%), Query Frame = 2
Query:    5 RQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPV 409
            R     +I  + +L   +KEA RLYP+ P  I   + ++  I G  VP  T L + +  L  + RV+++P KFQPERF     D +  G  FE +PF +G R C G  FAL  ++  ++ ++  F+     +E V
Sbjct:  348 RDATFQEISTMKHLDLFIKEAQRLYPSVPF-IGRFTEKDYVIDGDIVPKGTTLNLGLLMLGYNDRVFKDPHKFQPERF-----DREKPGP-FEYVPFSAGPRNCIGQKFALLEIKTVVSKIIRNFEVLPALDELV 475          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP4B1_MOUSE (Cytochrome P450 4B1 OS=Mus musculus GN=Cyp4b1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 40/137 (29.20%), Postives = 68/137 (49.64%), Query Frame = 2
Query:   23 DIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQN-FELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFA-TPSNEPVDMGEAL 427
            D+  + YL   +KE  RLYP  P      S     + G ++P  + + ++++ L R+  VW +P  F P RF       ++ G++ F  +PF +G R C G  FA+  M+   A  L  F+F+  PS  P+ + + +
Sbjct:  359 DLAQMTYLTMCMKECFRLYPPVPQVYRQLSKPVTFVDGRSLPAGSLISLHIYALHRNSAVWPDPEVFDPLRFSPE----NMTGRHPFAFMPFSAGPRNCIGQQFAMNEMKVVTALCLLRFEFSPDPSKIPIKVPQLI 491          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP27A_RABIT (Sterol 26-hydroxylase, mitochondrial OS=Oryctolagus cuniculus GN=CYP27A1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.247e-11
Identity = 41/121 (33.88%), Postives = 63/121 (52.07%), Query Frame = 2
Query:   23 DIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQN-FELLPFGSGRRACPGVSFALQVMEFTLAALLHGFD 382
            D  ++  L+A+LKE +RLYP  P +      +E  + G+  P +TQ V   +   RDP  + EP  F P R+L + +    + Q+ F  +PFG G RAC G   A   M+  LA L+  ++
Sbjct:  382 DFAHMPLLKAVLKETLRLYPVIPANSRIIVDKEIEVGGFLFPKNTQFVFCHYVTSRDPSTFSEPDTFWPYRWLRKGQPETSKTQHPFGSVPFGYGVRACLGRRIAELEMQLLLARLIQRYE 502          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP2A2_RAT (Cytochrome P450 2A2 OS=Rattus norvegicus GN=Cyp2a2 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 4.241e-11
Identity = 42/135 (31.11%), Postives = 60/135 (44.44%), Query Frame = 2
Query:    5 RQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQ---NFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSN 400
            RQ    D   + Y QA++ E  R    +PL IP + I+  T  G+ +P  T +   +  L  +P+ +     F P+ FL      D +GQ   N   LPF  G+R C G S A   +   L  +L  F F  P N
Sbjct:  337 RQPQYEDHMKMPYTQAVINEIQRFSNLAPLGIPRRIIKNTTFRGFFLPKGTDVFPIIGSLMTEPKFFPNHKDFNPQHFL------DDKGQLKKNAAFLPFSIGKRFCLGDSLAKMELFLLLTTILQNFRFKFPMN 465          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C4AA1_DROME (Probable cytochrome P450 4aa1 OS=Drosophila melanogaster GN=Cyp4aa1 PE=2 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 4.241e-11
Identity = 37/120 (30.83%), Postives = 65/120 (54.17%), Query Frame = 2
Query:   20 SDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGF 379
            +D+  + Y++  +KEA+RLYP+ PL I  K  EE  ++ + +P  + + I  +   R   ++ +P KFQPERF   + +       +  LPF +G R C G  FA+  ++  ++ LL  +
Sbjct:  356 TDLHEMRYMEMCIKEALRLYPSVPL-IARKLGEEVRLAKHTLPAGSNVFICPYATHRLAHIYPDPEKFQPERFSPENSE---NRHPYAFLPFSAGPRYCIGNRFAIMEIKTIVSRLLRSY 471          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP4C3_DROME (Cytochrome P450 4c3 OS=Drosophila melanogaster GN=Cyp4c3 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.538e-11
Identity = 45/140 (32.14%), Postives = 75/140 (53.57%), Query Frame = 2
Query:   26 IKNLV---YLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQN-FELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVDMGEALGL 433
            +KNL+   YL+  +K+++RL+P+ P+ +     E+  I G  VP  TQ +I  + L R+PRV+ +P +F P+ FL      +  G++ F  +PF +G R C G  FA+   +  ++ +L  +       E VD  E L L
Sbjct:  386 MKNLMDMRYLECCIKDSLRLFPSVPM-MARMVGEDVNIGGKIVPAGTQAIIMTYALHRNPRVFPKPEQFNPDNFLPE----NCAGRHPFAYIPFSAGPRNCIGQKFAILEEKAVISTVLRKYKI-----EAVDRREDLTL 515          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP2M1_ONCMY (Cytochrome P450 2M1 OS=Oncorhynchus mykiss GN=cyp2m1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.538e-11
Identity = 36/121 (29.75%), Postives = 60/121 (49.59%), Query Frame = 2
Query:   23 DIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDF 385
            D   + Y  A++ E  R    SP S+PHK + +     Y++P  T ++  +  +  DP++++ P +F PE FL  +    V  +N     FG G+RACPG + A   +     ++L  F F
Sbjct:  347 DRVKMPYTDAVIHEVQRYMDLSPTSVPHKVMRDTEFYNYHIPEGTMVLPLLSSVLVDPKLFKNPDEFDPENFLDEN---GVFKKNDGFFAFGVGKRACPGEALARVELFLFFTSVLQRFTF 464          
The following BLAST results are available for this feature:
BLAST of CX308650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 392
Match NameE-valueIdentityDescription
C12C1_DROME2.486e-1133.60Probable cytochrome P450 12c1, mitochondrial OS=Dr... [more]
C12A2_MUSDO2.486e-1131.58Cytochrome P450 CYP12A2 OS=Musca domestica GN=CYP1... [more]
CP4E5_DROMT3.247e-1132.59Cytochrome P450 4e5, mitochondrial OS=Drosophila m... [more]
CP4E1_DROME3.247e-1133.33Probable cytochrome P450 4e1 OS=Drosophila melanog... [more]
CP4B1_MOUSE3.247e-1129.20Cytochrome P450 4B1 OS=Mus musculus GN=Cyp4b1 PE=1... [more]
CP27A_RABIT3.247e-1133.88Sterol 26-hydroxylase, mitochondrial OS=Oryctolagu... [more]
CP2A2_RAT4.241e-1131.11Cytochrome P450 2A2 OS=Rattus norvegicus GN=Cyp2a2... [more]
C4AA1_DROME4.241e-1130.83Probable cytochrome P450 4aa1 OS=Drosophila melano... [more]
CP4C3_DROME5.538e-1132.14Cytochrome P450 4c3 OS=Drosophila melanogaster GN=... [more]
CP2M1_ONCMY5.538e-1129.75Cytochrome P450 2M1 OS=Oncorhynchus mykiss GN=cyp2... [more]

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Properties
Property NameValue
Genbank descriptionC21002C11Rv AbsLeaSub1 Citrus clementina cDNA clone C21002C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308650 ID=CX308650; Name=CX308650; organism=Citrus clementina; type=EST; length=459bp
GAAAAGGCAAGTGAATGAGTCAGATATAAAGAATTTAGTTTACTTGCAAG
CCATTCTCAAAGAAGCAATGCGTTTGTATCCTGCTTCGCCACTCTCAATT
CCACACAAGTCTATAGAAGAGTGCACGATTAGTGGTTATAATGTCCCTAC
CAGCACACAACTTGTTATCAATGTTTGGAAGCTTCAACGTGATCCACGTG
TCTGGGAAGAGCCTTGTAAGTTTCAGCCAGAAAGATTTTTGACAAGGCAC
AAGGATATTGACGTCAGAGGACAAAATTTTGAATTGTTACCTTTTGGTAG
TGGTAGAAGAGCTTGTCCTGGAGTTTCATTTGCCCTCCAAGTTATGGAAT
TTACACTTGCTGCTTTACTTCATGGCTTTGATTTTGCAACCCCATCAAAT
GAACCGGTGGACATGGGAGAGGCACTAGGGTTGAGTATCCAGAAAGCTAG
ACCACTTGA
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