CX308650

Overview
NameCX308650
Unique NameCX308650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP2AC_MOUSE (Cytochrome P450 2A12 OS=Mus musculus GN=Cyp2a12 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.538e-11
Identity = 40/133 (30.08%), Postives = 63/133 (47.37%), Query Frame = 2
Query:    5 RQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFEL---LPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATP 394
            RQ    D   + Y QA++ E  R    +PL IP +  +  +  G+ +P +T++   +  L  DP+ +  P  F P+ FL      D +GQ  ++   LPF +G+R C G S A   + F    +L  F F  P
Sbjct:  337 RQPQYEDHMKMPYTQAVINEIQRFSNFAPLGIPRRITKNTSFRGFFLPKATEVFPILGSLMTDPKFFSSPKDFNPQHFL------DDKGQLKKIPAFLPFSTGKRFCLGDSLAKMELFFLFTTILQNFRFKFP 463          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CCD1P_DROME (Probable cytochrome P450 12d1 proximal, mitochondrial OS=Drosophila melanogaster GN=Cyp12d1-p PE=2 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 5.538e-11
Identity = 42/125 (33.60%), Postives = 66/125 (52.80%), Query Frame = 2
Query:   11 VNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQ--NFELLPFGSGRRACPGVSFALQVMEFTLAALLHGF 379
            +NE ++K++ YL+A++KE +R YP + L        +  +SGY VP  T +++    L ++   +  P +F PER+L R  +   + Q   F  LPFG G R C G       ME T+A L+  F
Sbjct:  366 LNEENMKDMPYLRAVIKETLRYYP-NGLGTMRTCQNDVILSGYRVPKGTTVLLGSNVLMKEATYYPRPDEFLPERWL-RDPETGKKMQVSPFTFLPFGFGPRMCIGKRVVDLEMETTVAKLIRNF 488          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C508C_DICDI (Probable cytochrome P450 508C1 OS=Dictyostelium discoideum GN=cyp508c1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.538e-11
Identity = 40/148 (27.03%), Postives = 67/148 (45.27%), Query Frame = 2
Query:    2 KRQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTI--SGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVDMGEALGLSI 439
            KR++  SD  N  Y+QAI+KE MR++P     +P     +  I    Y +P   ++ IN   +  + + +++P KF+P RFL    +           PFG G R C G   A   +   +A L+  +   T     ++     GL++
Sbjct:  341 KREITLSDRPNTPYIQAIIKETMRMHPVVVFGLPRYCENDIFIGDENYFIPKGCKVFINFHSIGYNEKYFKDPYKFEPNRFLENSNN-----SMDSFFPFGLGNRVCLGRQLANDQLYLVIANLILKYKLKTIDENKINEDGIFGLTV 483          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP4B1_RAT (Cytochrome P450 4B1 OS=Rattus norvegicus GN=Cyp4b1 PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 7.233e-11
Identity = 39/137 (28.47%), Postives = 67/137 (48.91%), Query Frame = 2
Query:   23 DIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQN-FELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFA-TPSNEPVDMGEAL 427
            D+  + YL   +KE  RLYP  P      +     + G ++P  + + ++++ L R+  VW +P  F P RF       +  G++ F  +PF +G R C G  FA+  M+   A  L  F+F+  PS  P+ + + +
Sbjct:  359 DLAKMTYLTMCMKECFRLYPPVPQVYRQLNKPVTFVDGRSLPAGSLISLHIYALHRNSTVWPDPEVFDPLRFSPE----NAAGRHPFAFMPFSAGPRNCIGQQFAMNEMKVVTALCLLRFEFSLDPSKMPIKVPQLI 491          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP46A_MOUSE (Cholesterol 24-hydroxylase OS=Mus musculus GN=Cyp46a1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.233e-11
Identity = 43/129 (33.33%), Postives = 64/129 (49.61%), Query Frame = 2
Query:    2 KRQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECT-ISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDF 385
            KR ++  D+  L YL  +LKE++RLYP  P     + +EE T I G  VP +T L+ + + + R    +E+P  F P+RF             F   PF  G R+C G  FA   ++  +A LL   +F
Sbjct:  339 KRHLDYEDLGRLQYLSQVLKESLRLYP--PAWGTFRLLEEETLIDGVRVPGNTPLLFSTYVMGRMDTYFEDPLTFNPDRF-----GPGAPKPRFTYFPFSLGHRSCIGQQFAQMEVKVVMAKLLQRIEF 460          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP2S1_HUMAN (Cytochrome P450 2S1 OS=Homo sapiens GN=CYP2S1 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 7.233e-11
Identity = 39/125 (31.20%), Postives = 57/125 (45.60%), Query Frame = 2
Query:   23 DIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFE-LLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATP 394
            D   L Y  A+L EA RL    P+ IP   +      GY +P  T++   +  +  DP +++ P +F P+RFL    D D R +  E  LPF  G+R C G   A   +      +L  F   +P
Sbjct:  346 DRTRLPYTDAVLHEAQRLLALVPMGIPRTLMRTTRFRGYTLPQGTEVFPLLGSILHDPNIFKHPEEFNPDRFL----DADGRFRKHEAFLPFSLGKRVCLGEGLAKAELFLFFTTILQAFSLESP 466          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C525A_DICDI (Probable cytochrome P450 525A1 OS=Dictyostelium discoideum GN=cyp525a1 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.233e-11
Identity = 34/133 (25.56%), Postives = 70/133 (52.63%), Query Frame = 2
Query:   17 ESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYN---------VPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFA 388
            + D +++ +L  ++ E +RL+P +P+       ++   SG N         +P+ T ++I+V+ + RDP++W++P  F P R+    K+I+      + +PF SG R C G  F++      ++ L+  F+ +
Sbjct:  440 DEDYQSIEFLDWVIYETLRLFPPAPMIGRTSKNDDILKSGNNNNNNNNNISIPSETLILISVYAIHRDPKLWKDPNIFNPYRW----KNIENINNRSDFIPFSSGGRVCVGQKFSIVEARIIISKLILNFELS 568          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: C515B_DICDI (Probable cytochrome P450 515B1 OS=Dictyostelium discoideum GN=cyp515b1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.233e-11
Identity = 38/138 (27.54%), Postives = 65/138 (47.10%), Query Frame = 2
Query:   32 NLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPS-NEPVDMGEALGLSIQ 442
            N     A +KE +R  P  PL +PH   E+  I GY +P  TQ++ N++      +V+ +P +F P RF+             + + F +G R CPG + +   +      L   F F+ P+ N+  D    LG++++
Sbjct:  352 NYPLFNACVKETLRRSPPVPLGLPHLCSEDTEIGGYLIPKGTQIISNIYSASNCDKVFTDPLEFNPLRFIENSPP--------QTVTFSTGPRVCPGKNLSEDELFSFGTKLFKTFKFSRPNKNQLYDEVAILGITLE 481          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP9E2_BLAGE (Cytochrome P450 9e2 OS=Blattella germanica GN=CYP9E2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 41/131 (31.30%), Postives = 64/131 (48.85%), Query Frame = 2
Query:   26 IKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTIS---GYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPV 409
            I ++ YL  ++ E++RLYP + +    K ++   +     Y +     + I ++ +  DP+ +  P KF PERF   +KD     + F  LPFGSG R C G  FAL   +  L  LL  F+    S  P+
Sbjct:  380 IHSMKYLDMVVSESLRLYPPA-IFTDRKCVKNYRLPMEPSYTLEPGDAVWIPIYAIHHDPKYYPNPEKFDPERFSDENKD---NIKPFTYLPFGSGPRNCIGNRFALMESKIALVHLLCRFNLKVVSKTPI 506          
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP6J1_BLAGE (Cytochrome P450 6j1 OS=Blattella germanica GN=CYP6J1 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 38/127 (29.92%), Postives = 60/127 (47.24%), Query Frame = 2
Query:    2 KRQVNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFD 382
            K++V    IK++ YL  ++ E +R YPA P        +        +P  T + I V+ L  D + +  P KF PERF  ++K       +F  +PFG G R C G+ F    ++  L  +L  F+
Sbjct:  343 KKKVTYYSIKDMKYLDMVVNETLRKYPAIPFLDRRCQEDYPLTQDLMLPAGTGVYIPVYALHHDSKYFPSPAKFDPERFSEKNKQ---NIPHFAYMPFGEGPRNCIGMRFGSMQVKAALIHILSNFE 466          
The following BLAST results are available for this feature:
BLAST of CX308650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 392
Match NameE-valueIdentityDescription
CP2AC_MOUSE5.538e-1130.08Cytochrome P450 2A12 OS=Mus musculus GN=Cyp2a12 PE... [more]
CCD1P_DROME5.538e-1133.60Probable cytochrome P450 12d1 proximal, mitochondr... [more]
C508C_DICDI5.538e-1127.03Probable cytochrome P450 508C1 OS=Dictyostelium di... [more]
CP4B1_RAT7.233e-1128.47Cytochrome P450 4B1 OS=Rattus norvegicus GN=Cyp4b1... [more]
CP46A_MOUSE7.233e-1133.33Cholesterol 24-hydroxylase OS=Mus musculus GN=Cyp4... [more]
CP2S1_HUMAN7.233e-1131.20Cytochrome P450 2S1 OS=Homo sapiens GN=CYP2S1 PE=2... [more]
C525A_DICDI7.233e-1125.56Probable cytochrome P450 525A1 OS=Dictyostelium di... [more]
C515B_DICDI7.233e-1127.54Probable cytochrome P450 515B1 OS=Dictyostelium di... [more]
CP9E2_BLAGE9.447e-1131.30Cytochrome P450 9e2 OS=Blattella germanica GN=CYP9... [more]
CP6J1_BLAGE9.447e-1129.92Cytochrome P450 6j1 OS=Blattella germanica GN=CYP6... [more]

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Properties
Property NameValue
Genbank descriptionC21002C11Rv AbsLeaSub1 Citrus clementina cDNA clone C21002C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308650 ID=CX308650; Name=CX308650; organism=Citrus clementina; type=EST; length=459bp
GAAAAGGCAAGTGAATGAGTCAGATATAAAGAATTTAGTTTACTTGCAAG
CCATTCTCAAAGAAGCAATGCGTTTGTATCCTGCTTCGCCACTCTCAATT
CCACACAAGTCTATAGAAGAGTGCACGATTAGTGGTTATAATGTCCCTAC
CAGCACACAACTTGTTATCAATGTTTGGAAGCTTCAACGTGATCCACGTG
TCTGGGAAGAGCCTTGTAAGTTTCAGCCAGAAAGATTTTTGACAAGGCAC
AAGGATATTGACGTCAGAGGACAAAATTTTGAATTGTTACCTTTTGGTAG
TGGTAGAAGAGCTTGTCCTGGAGTTTCATTTGCCCTCCAAGTTATGGAAT
TTACACTTGCTGCTTTACTTCATGGCTTTGATTTTGCAACCCCATCAAAT
GAACCGGTGGACATGGGAGAGGCACTAGGGTTGAGTATCCAGAAAGCTAG
ACCACTTGA
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