CX308650

Overview
NameCX308650
Unique NameCX308650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length459
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig951 contig Ccv1_Contig951:1..459. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP312_DROME (Probable cytochrome P450 312a1 OS=Drosophila melanogaster GN=Cyp312a1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 34/125 (27.20%), Postives = 70/125 (56.00%), Query Frame = 2 
Query:   11 VNESDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFELLPFGSGRRACPGVSFALQVMEFTLAALLHGFDF 385
            ++   ++ L +L+A +KE +R+YP+ PL+   K+   CTI+ + +P  + ++I+   + R    + +P  F+P+R+       + + +    +PF +G R+C G  +A+ +++  LA LL  F F
Sbjct:  358 ISIEQVRQLEFLEACIKETLRMYPSGPLT-ARKATANCTINDFFIPKGSDVIISPIYMGRCKDFFPDPMVFKPDRWAI---GAEPKIEATTFIPFMAGARSCMGQRYAMVMLKMVLAHLLRNFLF 478
[Close]
BLAST of CX308650 vs. ExPASy Swiss-Prot
Match: CP1A1_PAGMA (Cytochrome P450 1A1 OS=Pagrus major GN=cyp1a1 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.447e-11
Identity = 44/145 (30.34%), Postives = 69/145 (47.59%), Query Frame = 2 
Query:   20 SDIKNLVYLQAILKEAMRLYPASPLSIPHKSIEECTISGYNVPTSTQLVINVWKLQRDPRVWEEPCKFQPERFLTRHKDIDVRGQNFE-LLPFGSGRRACPGVSFALQVMEFTLAALLHGFDFATPSNEPVDMGEALGLSIQKAR 451
            SD   L   +A + E  R     P +IPH + ++ +++GY +P +  + I  W +  D     +P  F P+RFL +    +V   N E ++ FG G+R C G   A   +   LA LL    F     EP+DM    GL+++  R
Sbjct:  359 SDRTQLTLPEAFILEIFRHSSFLPFTIPHCTTKDTSLNGYFIPKAPCIYIKQWPVIHDDDDVLDPSSFNPDRFL-KADGTEVNKLNGEKMMVFGMGKRRCIGEVIARNEVYLFLAILLVQLQFHAMPGEPLDMTPEYGLTMKHKR 502
The following BLAST results are available for this feature:
BLAST of CX308650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 392
Match NameE-valueIdentityDescription
CP312_DROME9.447e-1127.20Probable cytochrome P450 312a1 OS=Drosophila melan... [more]
CP1A1_PAGMA9.447e-1130.34Cytochrome P450 1A1 OS=Pagrus major GN=cyp1a1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC21002C11Rv AbsLeaSub1 Citrus clementina cDNA clone C21002C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308650 ID=CX308650; Name=CX308650; organism=Citrus clementina; type=EST; length=459bp
GAAAAGGCAAGTGAATGAGTCAGATATAAAGAATTTAGTTTACTTGCAAG
CCATTCTCAAAGAAGCAATGCGTTTGTATCCTGCTTCGCCACTCTCAATT
CCACACAAGTCTATAGAAGAGTGCACGATTAGTGGTTATAATGTCCCTAC
CAGCACACAACTTGTTATCAATGTTTGGAAGCTTCAACGTGATCCACGTG
TCTGGGAAGAGCCTTGTAAGTTTCAGCCAGAAAGATTTTTGACAAGGCAC
AAGGATATTGACGTCAGAGGACAAAATTTTGAATTGTTACCTTTTGGTAG
TGGTAGAAGAGCTTGTCCTGGAGTTTCATTTGCCCTCCAAGTTATGGAAT
TTACACTTGCTGCTTTACTTCATGGCTTTGATTTTGCAACCCCATCAAAT
GAACCGGTGGACATGGGAGAGGCACTAGGGTTGAGTATCCAGAAAGCTAG
ACCACTTGA
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