CX308655

Overview
NameCX308655
Unique NameCX308655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length381
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15147 contig Ccv1_Contig15147:877..1257. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308655 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.792e-20
Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 1
Query:   10 IYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 285
            +YG P ++   +L L+T L H      LP Y   EW + RG L T+DRDYG +N + H+I  THV HHLF  +PHYH +EAT+A KP+ G+YY+
Sbjct:  312 LYGVPYVIFVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVFGKYYR 404          
BLAST of CX308655 vs. ExPASy Swiss-Prot
Match: FAD3E_ARATH (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Arabidopsis thaliana GN=FAD3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.340e-20
Identity = 46/97 (47.42%), Postives = 60/97 (61.86%), Query Frame = 1
Query:    1 VFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 285
            V  +YG P ++   +L  +T L H      LP Y   EW + RG L T+DRDYGI N + H+I  THV HHLF  +PHYH ++ATKA K +LG YY+
Sbjct:  239 VLKVYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIFNNIHHDI-GTHVIHHLFPQIPHYHLVDATKAAKHVLGRYYR 334          
BLAST of CX308655 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.340e-20
Identity = 45/94 (47.87%), Postives = 61/94 (64.89%), Query Frame = 1
Query:   10 IYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 285
            +YG P  +   +L  +T L H      LP Y   EW + RG L T+DRDYG++N + H+I  THV HHLF  +PHYH +EAT+A KP+LG+YY+
Sbjct:  304 LYGIPYWINVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGLINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 396          
BLAST of CX308655 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.056e-20
Identity = 47/94 (50.00%), Postives = 61/94 (64.89%), Query Frame = 1
Query:   10 IYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 285
            +YG P L    +L L+T L H      LP Y   EW + RG L T+DRDYG +N + H+I  THV HHLF  +PHYH +EAT+A KP+LG+YY+
Sbjct:  308 LYGIPYLGNVMWLDLVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLIEATEAAKPVLGKYYR 400          
BLAST of CX308655 vs. ExPASy Swiss-Prot
Match: FAD3E_BRANA (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Brassica napus GN=FAD3 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.214e-20
Identity = 45/97 (46.39%), Postives = 60/97 (61.86%), Query Frame = 1
Query:    1 VFCIYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 285
            V  +YG P ++   +L  +T L H      LP Y   EW + RG L T+DRDYGI N + H+I  THV HHLF  +PHYH ++AT+A K +LG YY+
Sbjct:  236 VLKVYGVPYIIFVMWLDAVTYLHHHGHDEKLPWYRGKEWSYLRGGLTTIDRDYGIFNNIHHDI-GTHVIHHLFPQIPHYHLVDATRAAKHVLGRYYR 331          
BLAST of CX308655 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.214e-20
Identity = 45/94 (47.87%), Postives = 60/94 (63.83%), Query Frame = 1
Query:   10 IYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 285
            +YG P  +   +L  +T L H      LP Y   EW + RG L T+DRDYG +N + H+I  THV HHLF  +PHYH +EAT+A KP+LG+YY+
Sbjct:  297 LYGIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 389          
BLAST of CX308655 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.587e-19
Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = 1
Query:   43 FLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 285
            +L  +T L H      LP Y   EW + RG L T+DRDYG++N + H+I  THV HHLF  +PHYH +EAT+A KP+LG+YY+
Sbjct:  273 WLDFVTYLHHHGHEDKLPWYRGKEWSYLRGGLTTLDRDYGLINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVLGKYYR 354          
BLAST of CX308655 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.414e-19
Identity = 43/94 (45.74%), Postives = 59/94 (62.77%), Query Frame = 1
Query:   10 IYGGPLLVVNGFLVLITLLQHT--HPSLPHYHSSEWDWFRGALATVDRDYGILNKVFHNITDTHVAHHLFSTMPHYHAMEATKAIKPILGEYYQ 285
            +YG P  +   +L  +T L H      LP Y    W + RG L T+DRDYG +N + H+I  THV HHLF  +PHYH +EAT+A KP++G+YY+
Sbjct:  318 LYGIPYWIFVMWLDFVTYLHHHGHEDKLPWYRGKAWSYLRGGLTTLDRDYGWINNIHHDI-GTHVIHHLFPQIPHYHLVEATEAAKPVMGKYYR 410          
The following BLAST results are available for this feature:
BLAST of CX308655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
FAD3C_SOYBN1.792e-2047.87Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3E_ARATH2.340e-2047.42Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_ARATH2.340e-2047.87Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3C_SESIN3.056e-2050.00Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3E_BRANA5.214e-2046.39Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3D_ARATH5.214e-2047.87Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3C_BRANA2.587e-1950.60Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3C_RICCO4.414e-1945.74Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]

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Properties
Property NameValue
Genbank descriptionC21002D04Rv AbsLeaSub1 Citrus clementina cDNA clone C21002D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308655 ID=CX308655; Name=CX308655; organism=Citrus clementina; type=EST; length=381bp
GTGTTCTGCATCTATGGAGGACCTTTGCTGGTAGTGAACGGATTTCTCGT
TTTGATCACATTGTTGCAGCACACTCACCCTTCACTGCCACATTACCATT
CTTCAGAATGGGACTGGTTCCGAGGAGCCCTGGCAACTGTTGATAGAGAC
TATGGGATCTTGAACAAGGTCTTCCATAACATTACTGATACTCATGTAGC
TCACCATTTGTTTTCAACAATGCCACATTATCATGCAATGGAGGCTACGA
AGGCAATAAAGCCAATTTTGGGAGAATATTATCAGTTCGATGGGACTCCA
TTTTATAAGGCAATGTGGAGGGAAGCAAAGGAGTGTCTTTACGTTGAACC
AGACGAAGGTGACCAGAACAAAGGTGCCTTC
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