CX308667

Overview
NameCX308667
Unique NameCX308667
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length364
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX308667 vs. ExPASy Swiss-Prot
Match: KCY_RAT (UMP-CMP kinase OS=Rattus norvegicus GN=Cmpk1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.107e-13
Identity = 38/82 (46.34%), Postives = 51/82 (62.20%), Query Frame = 3
Query:   39 KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAXPAAEVFDAVKAVF 278
            K +  FVLFFDC+ E    R L R +  GR DDN E++ KR + +LES+ P++  YE  GKV+KIDA+    EVF  V  +F
Sbjct:  111 KADVSFVLFFDCNNEICIDRCLERGKSSGRSDDNRESLEKRIQTYLESTKPIIDLYEEMGKVKKIDASKSVDEVFGDVMKIF 192          
BLAST of CX308667 vs. ExPASy Swiss-Prot
Match: KCY_CHICK (UMP-CMP kinase OS=Gallus gallus GN=CMPK1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 39/96 (40.62%), Postives = 55/96 (57.29%), Query Frame = 3
Query:    3 NEENRAAFEAVT--KIEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAXPAAEVFDAVKAVF 278
            NE+N   +      K +  FVLFFDC  E    R L R +  GR DDN E++ KR   +L+S+ P++  YE  GKVR++DA+    EVF+ V  +F
Sbjct:   97 NEDNLQGWNKTMDGKADVSFVLFFDCDNEICIGRCLERGKSSGRSDDNRESLEKRIHTYLQSTRPIIDLYERMGKVRRVDASKSVDEVFEKVVQIF 192          
BLAST of CX308667 vs. ExPASy Swiss-Prot
Match: KAD1_CAEEL (Probable adenylate kinase isoenzyme F38B2.4 OS=Caenorhabditis elegans GN=F38B2.4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.594e-13
Identity = 37/78 (47.44%), Postives = 53/78 (67.95%), Query Frame = 3
Query:   45 EPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAXPAAEVFDAVKA 272
            E + VLFFD +EE + +R+L+R Q  GR DDN +TI+KR   F+ S+ PVV YYE+KGK+ +I+A     ++F  V A
Sbjct:  124 EAKLVLFFDVAEETLVKRLLHRAQTSGRADDNADTIKKRLHTFVTSTAPVVDYYESKGKLVRINAEGSVDDIFAVVVA 201          
BLAST of CX308667 vs. ExPASy Swiss-Prot
Match: KCY_DICDI (Cytidylate kinase OS=Dictyostelium discoideum GN=pyrK PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.046e-12
Identity = 40/96 (41.67%), Postives = 59/96 (61.46%), Query Frame = 3
Query:    3 NEENRAAFEAVTK--IEPEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAXPAAEVFDAVKAVF 278
            NEEN  ++E   K  ++ +FVLFFDC EE M +R+L R +  GR DDN+E+I+KRF  F   +  V+ +Y    KV+ I A     EV++ V+ +F
Sbjct:   95 NEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENLF 190          
BLAST of CX308667 vs. ExPASy Swiss-Prot
Match: KAD1_CYPCA (Adenylate kinase isoenzyme 1 OS=Cyprinus carpio GN=ak1 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.510e-11
Identity = 35/79 (44.30%), Postives = 51/79 (64.56%), Query Frame = 3
Query:   48 PEFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAXPAAEVFD-AVKAV 275
            P  +L+ D   E M +R++ R Q  GR DDN ETI+KR  ++ +++ PV+ YYE +G VRKI++  P  EVF   VKA+
Sbjct:  112 PALLLYIDAKAETMVQRLMKRGQTSGRSDDNEETIKKRLDLYYKATEPVIAYYETRGIVRKINSELPVDEVFAIVVKAI 190          
BLAST of CX308667 vs. ExPASy Swiss-Prot
Match: UMPK_SCHPO (Probable uridylate kinase OS=Schizosaccharomyces pombe GN=SPCC1795.05c PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.787e-11
Identity = 32/78 (41.03%), Postives = 54/78 (69.23%), Query Frame = 3
Query:   51 EFVLFFDCSEEEMERRILNRNQ--GREDDNVETIRKRFKVFLESSLPVVQYYEAKGKVRKIDAAXPAAEVF-DAVKAV 275
            +F L+F C +E M +R+++R +  GR DDN+E+I+KRF  + ++S+PVV+Y +++ ++  IDA      VF D VKA+
Sbjct:  110 KFALYFRCGQETMLKRLIHRGKTSGRSDDNIESIKKRFVTYTKASMPVVEYLKSQNRLITIDAEQDPDAVFEDTVKAL 187          
The following BLAST results are available for this feature:
BLAST of CX308667 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
KCY_RAT2.107e-1346.34UMP-CMP kinase OS=Rattus norvegicus GN=Cmpk1 PE=1 ... [more]
KCY_CHICK3.594e-1340.63UMP-CMP kinase OS=Gallus gallus GN=CMPK1 PE=2 SV=1[more]
KAD1_CAEEL3.594e-1347.44Probable adenylate kinase isoenzyme F38B2.4 OS=Cae... [more]
KCY_DICDI1.046e-1241.67Cytidylate kinase OS=Dictyostelium discoideum GN=p... [more]
KAD1_CYPCA1.510e-1144.30Adenylate kinase isoenzyme 1 OS=Cyprinus carpio GN... [more]
UMPK_SCHPO9.787e-1141.03Probable uridylate kinase OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionC21002E04Rv AbsLeaSub1 Citrus clementina cDNA clone C21002E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308667 ID=CX308667; Name=CX308667; organism=Citrus clementina; type=EST; length=364bp
GGAACGAGGAAAATCGTGCTGCATTTGAAGCTGTTACCAAAATTGAGCCA
GAATTCGTTCTGTTTTTTGACTGTTCTGAGGAGGAGATGGAGAGGCGCAT
TTTGAATAGGAATCAGGGAAGAGAAGATGATAACGTTGAGACAATTAGGA
AGCGGTTTAAGGTTTTCTTAGAATCTAGTCTCCCTGTGGTTCAATATTAT
GAAGCTAAGGGTAAAGTTCGGAAGATTGATGCTGCANAGCCTGCTGCAGA
GGTTTTTGATGCTGTTAAAGCTGTTTTTACCCCAAAAGATGAGAAGGCTG
CTGCTTAGGTCTTCTCTGTCCAGAGTATCAGATTTAATATCAAGGTGGTG
GTATTGTTGTTGGC
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