CX308682

Overview
NameCX308682
Unique NameCX308682
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length273
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11517 contig Ccv1_Contig11517:814..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: CATH_BOVIN (Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.010e-17
Identity = 43/89 (48.31%), Postives = 52/89 (58.43%), Query Frame = -3
Query:    2 GLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNNPMDVNHAVVAV 268
            G+  E+ YPY G+DG CK+        V D  NITL  E+ +  AV L  PVS AFEV   F  Y+ G+YSST C   P  VNHAV+AV
Sbjct:  198 GIMGEDTYPYRGQDGDCKYQPSKAIAFVKDVANITLNDEEAMVEAVALHNPVSFAFEVTADFMMYRKGIYSSTSCHKTPDKVNHAVLAV 286          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: CATLL_FASHE (Cathepsin L-like proteinase OS=Fasciola hepatica GN=Cat-1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.757e-13
Identity = 37/89 (41.57%), Postives = 55/89 (61.80%), Query Frame = -3
Query:    2 GLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDGFRFYKSGVYSSTKCGNNPMDVNHAVVAV 268
            GL+TE  YPYT  +G C+++ +    +V     +  G+E EL++ VG  RP +VA +V   F  Y+SG+Y S  C  +P+ VNHAV+AV
Sbjct:  188 GLETESSYPYTAVEGQCRYNKQLGVAKVTGYYTVHSGSEVELKNLVGARRPAAVAVDVESDFMMYRSGIYQSQTC--SPLRVNHAVLAV 274          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: CYSP2_HOMAM (Digestive cysteine proteinase 2 OS=Homarus americanus GN=LCP2 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.141e-13
Identity = 38/90 (42.22%), Postives = 51/90 (56.67%), Query Frame = -3
Query:    2 GLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNNPMDVNHAVVAV 268
            G+DTE  YPY  +DG C+F S +V        NI  G+E  LQ AV  + P+SV  +     F+FY SGVY    C  +P  ++HAV+AV
Sbjct:  188 GIDTEAAYPYEARDGSCRFDSNSVAATCSGHTNIASGSETGLQQAVRDIGPISVTIDAAHSSFQFYSSGVYYEPSC--SPSYLDHAVLAV 275          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: CFAD_DICDI (Counting factor associated protein D OS=Dictyostelium discoideum GN=cfaD PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.020e-13
Identity = 37/92 (40.22%), Postives = 57/92 (61.96%), Query Frame = -3
Query:    2 GGLDTEEVYPYTGKDGVCKFSSENV-GVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNNPMDVNHAVVAV 271
            G L TE  YPY  ++G+C+  +    GV +   VN+T G+E  LQ+A+    PV++A +  VD FR+Y SGVY++  C N   D++H V+A+
Sbjct:  389 GSLATESNYPYLMQNGLCRDRTVTPSGVSITGYVNVTSGSESALQNAIATTGPVAIAIDASVDDFRYYMSGVYNNPACKNGLDDLDHEVLAI 480          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: CYSP4_DICDI (Cysteine proteinase 4 OS=Dictyostelium discoideum GN=cprD PE=2 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.048e-12
Identity = 38/91 (41.76%), Postives = 55/91 (60.44%), Query Frame = -3
Query:    2 GLDTEEVYPYTGKDGV-CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNNPMDVNHAVVAV 268
            G+DTE  YPYT +DG  CKF + N+G Q++   N+T G+E  LQ A     PVSVA +   + F+ Y+SG+Y    C  +P  ++H V+ V
Sbjct:  195 GIDTESSYPYTAEDGKECKFKTSNIGAQIVSYQNVTSGSEASLQSASNNA-PVSVAIDASNESFQLYESGIYYEPAC--SPTQLDHGVLVV 282          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: TEST2_RAT (Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.199e-12
Identity = 40/91 (43.96%), Postives = 54/91 (59.34%), Query Frame = -3
Query:    2 GGLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVDG-FRFYKSGVYSSTKCGNNPMDVNHAVVAV 271
            GGL TEE YPY G+   C++ +EN    V D V I  G+E+ L  AV  V P+SVA +   G F+FY SG+Y   +C    + +NHAV+ V
Sbjct:  194 GGLATEESYPYRGQGRECRYHAENSAANVRDFVQIP-GSEEALMKAVAKVGPISVAVDASHGSFQFYGSGIYYEPQC--KRVHLNHAVLVV 281          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: TEST2_MOUSE (Testin-2 OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.867e-12
Identity = 40/91 (43.96%), Postives = 52/91 (57.14%), Query Frame = -3
Query:    2 GGLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNNPMDVNHAVVAV 271
            GGL TEE YPY G    C++ +EN    V D V I  G E+ L  AV  V P+SVA +   D F+FY SG+Y   +C    + +NHAV+ V
Sbjct:  194 GGLATEESYPYIGPGRKCRYHAENSAANVRDFVQIP-GREEALMKAVAKVGPISVAVDASHDSFQFYDSGIYYEPQC--KRVHLNHAVLVV 281          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: CATJ_MOUSE (Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.158e-11
Identity = 39/90 (43.33%), Postives = 49/90 (54.44%), Query Frame = -3
Query:    2 GLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNNPMDVNHAVVAV 268
            GL+ E  YPY GKDG C++ SEN    + D VN+    E  L  AV  + PVS A +   D FRFY  G+Y    C +    VNHAV+ V
Sbjct:  195 GLEAEATYPYEGKDGPCRYRSENASANITDYVNLPPN-ELYLWVAVASIGPVSAAIDASHDSFRFYNGGIYYEPNCSS--YFVNHAVLVV 281          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: CYSP6_DICDI (Cysteine proteinase 6 OS=Dictyostelium discoideum GN=cprF PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.975e-11
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = -3
Query:    2 GGLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNNPMDVNHAVVAV 271
            GG+DTE  YP+T     CK++  N+G ++   VN+T G+E +L   V    P SVA +     F+FY SG+Y+   C +  +D  H V+AV
Sbjct:  194 GGIDTESSYPFTANTEKCKYNPSNIGAELSSYVNVTSGSESDLAAKV-TQGPTSVAIDASQPSFQFYSSGIYNEPACSSTQLD--HGVLAV 281          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: CYSP5_DICDI (Cysteine proteinase 5 OS=Dictyostelium discoideum GN=cprE PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.975e-11
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = -3
Query:    2 GLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNNPMDVNHAVVAV 268
            G+DTE  YPY  ++G C++ SEN G  +     +T G+E  L+ AV  V PVSVA +     F+ Y SG+Y   +C +  +D  H V+AV
Sbjct:  191 GIDTESSYPYKAENGKCEYKSENSGATLSSYKTVTAGSESSLESAVN-VNPVSVAIDASHQSFQLYTSGIYYEPECSSENLD--HGVLAV 277          
The following BLAST results are available for this feature:
BLAST of CX308682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CATH_BOVIN7.010e-1748.31Cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1[more]
CATLL_FASHE2.757e-1341.57Cathepsin L-like proteinase OS=Fasciola hepatica G... [more]
CYSP2_HOMAM6.141e-1342.22Digestive cysteine proteinase 2 OS=Homarus america... [more]
CFAD_DICDI8.020e-1340.22Counting factor associated protein D OS=Dictyostel... [more]
CYSP4_DICDI3.048e-1241.76Cysteine proteinase 4 OS=Dictyostelium discoideum ... [more]
TEST2_RAT5.199e-1243.96Testin-2 OS=Rattus norvegicus GN=Testin PE=1 SV=2[more]
TEST2_MOUSE8.867e-1243.96Testin-2 OS=Mus musculus PE=2 SV=1[more]
CATJ_MOUSE1.158e-1143.33Cathepsin J OS=Mus musculus GN=Ctsj PE=2 SV=2[more]
CYSP6_DICDI1.975e-1138.46Cysteine proteinase 6 OS=Dictyostelium discoideum ... [more]
CYSP5_DICDI1.975e-1140.00Cysteine proteinase 5 OS=Dictyostelium discoideum ... [more]

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Properties
Property NameValue
Genbank descriptionC21002F07Rv AbsLeaSub1 Citrus clementina cDNA clone C21002F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308682 ID=CX308682; Name=CX308682; organism=Citrus clementina; type=EST; length=273bp
CAACAGCAACGACAGCATGGTTCACATCCATGGGATTATTTCCACATTTA
GTGCTGCTGTAAACTCCACTCTTGTAAAATCGGAATCCATCTACTACTTC
AAATGCCACACTCACAGGTCGAACAAGACCAACTGCATGCTGTAATTCAT
CTTCAGCACCCAAGGTAATGTTGACTGAGTCCAGGACTTGGACGCCAACA
TTTTCAGATGAGAATTTGCAGACACCATCTTTTCCGGTGTAGGGATATAC
TTCCTCAGTATCAAGGCCACCAT
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