CX308682

Overview
NameCX308682
Unique NameCX308682
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length273
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11517 contig Ccv1_Contig11517:814..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: CYSP1_HOMAM (Digestive cysteine proteinase 1 OS=Homarus americanus GN=LCP1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.580e-11
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = -3
Query:    2 GGLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNNPMDVNHAVVAV 271
            GG+DTE  YPY  +D  C+F+S  +G      V I  G+E  L+ A   + P+SVA +     F+ Y +GVY    C ++ +D  HAV+AV
Sbjct:  186 GGVDTESSYPYEARDNTCRFNSNTIGATCTGYVGIAQGSESALKTATRDIGPISVAIDASHRSFQSYYTGVYYEPSCSSSQLD--HAVLAV 274          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: CYSP7_DICDI (Cysteine proteinase 7 OS=Dictyostelium discoideum GN=cprG PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.401e-11
Identity = 38/91 (41.76%), Postives = 54/91 (59.34%), Query Frame = -3
Query:    2 GLDTEEVYPYTGKDGV-CKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNNPMDVNHAVVAV 268
            G+DTE  YPYT +DG  CKF+ +NV  Q+   VN+T G+E +L   V    P SVA +  +  F+ Y SG+Y+   C +  +D  H V+AV
Sbjct:  193 GIDTESSYPYTAEDGKKCKFNPKNVAAQLSSYVNVTSGSESDLAAKV-TQGPTSVAIDASNQSFQLYVSGIYNEPACSSTQLD--HGVLAV 280          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: CATJ_RAT (Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.401e-11
Identity = 39/90 (43.33%), Postives = 48/90 (53.33%), Query Frame = -3
Query:    2 GLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNNPMDVNHAVVAV 268
            GL+ E  YPY GKDG C++ SEN    +   VN+    E  L  AV  + PVS A +   D FRFY  GVY    C +    VNHAV+ V
Sbjct:  195 GLEAEATYPYEGKDGPCRYHSENASANITGFVNLPPN-ELYLWVAVASIGPVSAAIDASHDSFRFYSGGVYHEPNCSS--YVVNHAVLVV 281          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: CYSP3_HOMAM (Digestive cysteine proteinase 3 OS=Homarus americanus GN=LCP3 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.748e-11
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = -3
Query:    2 GGLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVVD-GFRFYKSGVYSSTKCGNNPMDVNHAVVAV 271
            GG+DTE  YPY  +D  C+F + ++G     SV +    E+ LQ AV  V P+SVA +     F+FY SGVY    C  +P  ++H V+AV
Sbjct:  186 GGIDTESSYPYEAEDRSCRFDANSIGAICTGSVEVQ-HTEEALQEAVSGVGPISVAIDASHFSFQFYSSGVYYEQNC--SPTFLDHGVLAV 273          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: CATL_SARPE (Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.804e-11
Identity = 34/91 (37.36%), Postives = 51/91 (56.04%), Query Frame = -3
Query:    2 GGLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEVV-DGFRFYKSGVYSSTKCGNNPMDVNHAVVAV 271
            GG+DTE+ YPY G D  C F+   +G      V+I  G E++++ AV  + PVSVA +   + F+ Y  GVY+  +C    +D  H V+ V
Sbjct:  202 GGIDTEKSYPYEGIDDSCHFNKATIGATDTGFVDIPEGDEEKMKKAVATMGPVSVAIDASHESFQLYSEGVYNEPECDEQNLD--HGVLVV 290          
BLAST of CX308682 vs. ExPASy Swiss-Prot
Match: CATL2_HUMAN (Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.804e-11
Identity = 36/91 (39.56%), Postives = 47/91 (51.65%), Query Frame = -3
Query:    2 GGLDTEEVYPYTGKDGVCKFSSENVGVQVLDSVNITLGAEDELQHAVGLVRPVSVAFEV-VDGFRFYKSGVYSSTKCGNNPMDVNHAVVAV 271
            GGLD+EE YPY   D +CK+  EN          +  G E  L  AV  V P+SVA +     F+FYKSG+Y    C +  +D  H V+ V
Sbjct:  194 GGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLD--HGVLVV 282          
The following BLAST results are available for this feature:
BLAST of CX308682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CYSP1_HOMAM2.580e-1138.46Digestive cysteine proteinase 1 OS=Homarus america... [more]
CYSP7_DICDI4.401e-1141.76Cysteine proteinase 7 OS=Dictyostelium discoideum ... [more]
CATJ_RAT4.401e-1143.33Cathepsin J OS=Rattus norvegicus GN=Ctsj PE=2 SV=2[more]
CYSP3_HOMAM5.748e-1140.66Digestive cysteine proteinase 3 OS=Homarus america... [more]
CATL_SARPE9.804e-1137.36Cathepsin L OS=Sarcophaga peregrina PE=1 SV=1[more]
CATL2_HUMAN9.804e-1139.56Cathepsin L2 OS=Homo sapiens GN=CTSL2 PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC21002F07Rv AbsLeaSub1 Citrus clementina cDNA clone C21002F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308682 ID=CX308682; Name=CX308682; organism=Citrus clementina; type=EST; length=273bp
CAACAGCAACGACAGCATGGTTCACATCCATGGGATTATTTCCACATTTA
GTGCTGCTGTAAACTCCACTCTTGTAAAATCGGAATCCATCTACTACTTC
AAATGCCACACTCACAGGTCGAACAAGACCAACTGCATGCTGTAATTCAT
CTTCAGCACCCAAGGTAATGTTGACTGAGTCCAGGACTTGGACGCCAACA
TTTTCAGATGAGAATTTGCAGACACCATCTTTTCCGGTGTAGGGATATAC
TTCCTCAGTATCAAGGCCACCAT
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