CX308690

Overview
NameCX308690
Unique NameCX308690
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length218
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig942 contig Ccv1_Contig942:507..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX308690 vs. ExPASy Swiss-Prot
Match: WRK74_ARATH (Probable WRKY transcription factor 74 OS=Arabidopsis thaliana GN=WRKY74 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.652e-11
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = -3 
Query:   52 QKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSS 216
            QK  K +P PR Y++CS    GCP +K V+RC+E+ S L+ TYEGEHNH    SS
Sbjct:  272 QKPIKGSPHPRGYYKCSSVR-GCPARKHVERCVEETSMLIVTYEGEHNHSRILSS 325
[Close]
BLAST of CX308690 vs. ExPASy Swiss-Prot
Match: WRK36_ARATH (Probable WRKY transcription factor 36 OS=Arabidopsis thaliana GN=WRKY36 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.652e-11
Identity = 38/85 (44.71%), Postives = 51/85 (60.00%), Query Frame = -3 
Query:    1 QKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDK-SFLVATYEGEHNHDV------------QCSSLGQSSSLTNYCSPKSSI 216
            QK  K NP PRAY+RCSM SS CPV+K+VQRC E++ S  + TYEG H+H +              +SL QS S ++  S  +S+
Sbjct:  213 QKTAKTNPLPRAYYRCSM-SSNCPVRKQVQRCGEEETSAFMTTYEGNHDHPLPMEASHMAAGTSAAASLLQSGSSSSSSSTSASL 296
The following BLAST results are available for this feature:
BLAST of CX308690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
WRK74_ARATH9.652e-1152.73Probable WRKY transcription factor 74 OS=Arabidops... [more]
WRK36_ARATH9.652e-1144.71Probable WRKY transcription factor 36 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionC21002G04Rv AbsLeaSub1 Citrus clementina cDNA clone C21002G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308690 ID=CX308690; Name=CX308690; organism=Citrus clementina; type=EST; length=218bp
AATTGAGCTTTTGGGTGAGCAATAATTTGTTAAAGAGGAGGATTGCCCAA
GTGAGCTACATTGAACATCATGGTTGTGTTCTCCTTCATAAGTTGCAACG
AGAAATGACTTGTCCTCCATGCATCTTTGAACCTTTTTTTTTACAGGACA
TCCAGAAGAAGCCATTGAACATCTGAAATAAGCCCGAGGTGAGGGATTAT
CTTTAGTAACCTTTTGGC
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