CX308698

Overview
NameCX308698
Unique NameCX308698
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length445
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig735 contig Ccv1_Contig735:257..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308698 vs. ExPASy Swiss-Prot
Match: LGB1_PEA (Leghemoglobin-1 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 8.267e-17
Identity = 52/120 (43.33%), Postives = 76/120 (63.33%), Query Frame = -2
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSTQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FT++QEALV  S +  K+N     + F+  + E AP+ + LFSFL+D+   +E + KL+ HA  VF +  +SA QLR  G+V +  +TL   GA+H + GV N HF V K +LL+TIK+A
Sbjct:    3 FTDKQEALVNSS-SEFKQNLPGYSILFYTIVLEKAPAAKGLFSFLKDT-AGVEDSPKLQAHAEQVFGLVRDSAAQLRTKGEVVLGNATL---GAIHVQKGVTNPHFVVVKEALLQTIKKA 117          
BLAST of CX308698 vs. ExPASy Swiss-Prot
Match: LGB2_PHAVU (Leghemoglobin OS=Phaseolus vulgaris PE=2 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 2.659e-15
Identity = 50/121 (41.32%), Postives = 69/121 (57.02%), Query Frame = -2
Query:    1 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSTQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 363
            AFTE+QEALV  SW   K N  +  + F+  I E AP+ + LFSFL +   P   N KL  HA S+F +  +SA QLR  G V    +    LG++H +  + +  F V K +LL+T+KEA
Sbjct:    3 AFTEKQEALVNSSWEAFKGNIPQYSVVFYTSILEKAPAAKNLFSFLANGVDP--TNPKLTAHAESLFGLVRDSAAQLRANGAVVADAA----LGSIHSQKALNDSQFLVVKEALLKTLKEA 117          
BLAST of CX308698 vs. ExPASy Swiss-Prot
Match: LGB2_VICFA (Leghemoglobin 29 OS=Vicia faba GN=LB29 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.940e-14
Identity = 49/121 (40.50%), Postives = 68/121 (56.20%), Query Frame = -2
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSTQKLFSFLRDSN-VPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FT  QEALV  SW    +N     + F+  I E AP  + +FS L+D+N +PL  N  +  H   VF M  ++A QL+  G+V + ++T   LG VH +  V   HF V K +LL+TIKEA
Sbjct:    3 FTLRQEALVNSSWEAFNQNLPLFSVLFYTFILEKAPIAKNMFSVLKDANEIPL-ANPSINAHTEMVFEMVRDAAAQLQTTGQVVLGDTT---LGVVHTQKRVDGLHFMVVKEALLKTIKEA 119          
BLAST of CX308698 vs. ExPASy Swiss-Prot
Match: LGB_PSOTE (Leghemoglobin OS=Psophocarpus tetragonolobus PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 6.551e-14
Identity = 48/120 (40.00%), Postives = 67/120 (55.83%), Query Frame = -2
Query:    1 FTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSTQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 360
            FTE+QEALV  S+   K N  +  + F+  I E AP+ + LF FL +   P   N KL  HA  +F +  +SA QLR  G V    +    LG++H + GV +  F V K +LL+T+KEA
Sbjct:    4 FTEKQEALVNSSYEAFKANVPQYSVVFYTSILEKAPAAKDLFPFLANGVDP--TNPKLIGHAEKLFGLVHDSAAQLRAKGAVVADAA----LGSLHAQKGVTDPQFVVVKEALLKTVKEA 117          
BLAST of CX308698 vs. ExPASy Swiss-Prot
Match: LGB2_SOYBN (Leghemoglobin C2 OS=Glycine max PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 6.551e-14
Identity = 48/121 (39.67%), Postives = 68/121 (56.20%), Query Frame = -2
Query:    1 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSTQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 363
            AFTE+QEALV  S+   K N  +  + F+  I E AP+ + LFSFL +   P   N KL  HA  +F +  +SA QL+  G V    +    LG++H +  + +  F V K +LL+TIKEA
Sbjct:    3 AFTEKQEALVSSSFEAFKANIPQYSVVFYTSILEKAPAAKDLFSFLSNGVDP--SNPKLTGHAEKLFGLVRDSAGQLKANGTVVADAA----LGSIHAQKAITDPQFVVVKEALLKTIKEA 117          
BLAST of CX308698 vs. ExPASy Swiss-Prot
Match: LGB3_SOYBN (Leghemoglobin C3 OS=Glycine max GN=LGB1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 8.555e-14
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = -2
Query:    1 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSTQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 363
            AFT++QEALV  S+   K N  +  + F+  I E AP  + LFSFL +   P   N KL  HA  +F +  +SA QL+ +G V +  +    LG++H +  + +  F V K +LL+TIKEA
Sbjct:    3 AFTDKQEALVSSSFEAFKTNIPQYSVVFYTSILEKAPVAKDLFSFLANGVDP--TNPKLTGHAEKLFGLVRDSAGQLKASGTVVIDAA----LGSIHAQKAITDPQFVVVKEALLKTIKEA 117          
BLAST of CX308698 vs. ExPASy Swiss-Prot
Match: LGBA_SOYBN (Leghemoglobin A OS=Glycine max GN=LBA PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.117e-13
Identity = 48/121 (39.67%), Postives = 68/121 (56.20%), Query Frame = -2
Query:    1 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSTQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 363
            AFTE+Q+ALV  S+   K N  +  + F+  I E AP+ + LFSFL +   P   N KL  HA  +F +  +SA QL+ +G V    +    LG+VH +  V +  F V K +LL+TIK A
Sbjct:    3 AFTEKQDALVSSSFEAFKANIPQYSVVFYTSILEKAPAAKDLFSFLANGVDP--TNPKLTGHAEKLFALVRDSAGQLKASGTVVADAA----LGSVHAQKAVTDPQFVVVKEALLKTIKAA 117          
BLAST of CX308698 vs. ExPASy Swiss-Prot
Match: LGB1_SOYBN (Leghemoglobin C1 OS=Glycine max PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 5.545e-13
Identity = 48/121 (39.67%), Postives = 67/121 (55.37%), Query Frame = -2
Query:    1 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSTQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 363
            AFTE+QEALV  S+   K N  +  + F+  I E AP+ + LFSFL +   P   N KL  HA  +F +  +SA QL+  G V    +    L ++H +  V +  F V K +LL+TIKEA
Sbjct:    3 AFTEKQEALVSSSFEAFKANIPQYSVVFYNSILEKAPAAKDLFSFLANGVDP--TNPKLTGHAEKLFALVRDSAGQLKTNGTVVADAA----LVSIHAQKAVTDPQFVVVKEALLKTIKEA 117          
BLAST of CX308698 vs. ExPASy Swiss-Prot
Match: LGB1_VIGUN (Leghemoglobin-1 OS=Vigna unguiculata GN=LBI PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.613e-12
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = -2
Query:    1 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSTQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 363
            AF+++QEALV  ++   K N  +  + F+  I E AP+ + LFSFL  +N     N KL  HA  +F +  +SA QLR +G V    +    LGAVH +  V +  F V K +L++T+KEA
Sbjct:    3 AFSDKQEALVNGAYEAFKANIPKYSVVFYTTILEKAPAAKNLFSFL--ANGVDATNPKLTGHAEKLFGLVRDSAAQLRASGGVVADAA----LGAVHSQKAVNDAQFVVVKEALVKTLKEA 117          
BLAST of CX308698 vs. ExPASy Swiss-Prot
Match: LGB2_VIGUN (Leghemoglobin-2 OS=Vigna unguiculata GN=LBII PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.784e-11
Identity = 45/121 (37.19%), Postives = 68/121 (56.20%), Query Frame = -2
Query:    1 AFTEEQEALVVKSWNVMKKNAGELGLKFFLRIFEIAPSTQKLFSFLRDSNVPLEQNQKLKPHAMSVFVMTCESAVQLRKAGKVTVRESTLKKLGAVHFKYGVVNEHFEVTKFSLLETIKEA 363
            AF+++QE LV  ++   K +  +  + F+  I E AP+ + LFSFL  +N     N KL  HA  +F +  +SA QLR +G V    +    LGAVH +  V +  F V K +L++T+KEA
Sbjct:    3 AFSDKQEGLVNGAYEAFKADIPKYSVVFYTTILEKAPAAKNLFSFL--ANGVDATNPKLTGHAEKLFGLVRDSAAQLRASGGVVADAA----LGAVHSQKAVNDAQFVVVKEALVKTLKEA 117          
The following BLAST results are available for this feature:
BLAST of CX308698 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
LGB1_PEA8.267e-1743.33Leghemoglobin-1 OS=Pisum sativum PE=1 SV=2[more]
LGB2_PHAVU2.659e-1541.32Leghemoglobin OS=Phaseolus vulgaris PE=2 SV=3[more]
LGB2_VICFA2.940e-1440.50Leghemoglobin 29 OS=Vicia faba GN=LB29 PE=2 SV=1[more]
LGB_PSOTE6.551e-1440.00Leghemoglobin OS=Psophocarpus tetragonolobus PE=2 ... [more]
LGB2_SOYBN6.551e-1439.67Leghemoglobin C2 OS=Glycine max PE=1 SV=2[more]
LGB3_SOYBN8.555e-1438.84Leghemoglobin C3 OS=Glycine max GN=LGB1 PE=2 SV=2[more]
LGBA_SOYBN1.117e-1339.67Leghemoglobin A OS=Glycine max GN=LBA PE=1 SV=2[more]
LGB1_SOYBN5.545e-1339.67Leghemoglobin C1 OS=Glycine max PE=2 SV=2[more]
LGB1_VIGUN1.613e-1238.84Leghemoglobin-1 OS=Vigna unguiculata GN=LBI PE=2 S... [more]
LGB2_VIGUN1.784e-1137.19Leghemoglobin-2 OS=Vigna unguiculata GN=LBII PE=1 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC21002G12Rv AbsLeaSub1 Citrus clementina cDNA clone C21002G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308698 ID=CX308698; Name=CX308698; organism=Citrus clementina; type=EST; length=445bp
TGCCTCTTTTATGGTTTCCAGTAGTGAAAATTTTGTGACCTCAAAATGCT
CATTAACAACACCATATTTGAAGTGGACAGCTCCTAATTTTTTTAGAGTT
GATTCTCTTACTGTCACTTTGCCTGCTTTCCTCAGTTGCACTGCTGATTC
ACACGTCATAACAAAAACAGACATGGCGTGGGGCTTGAGCTTCTGGTTCT
GCTCTAGAGGCACATTTGAGTCTCTCAAGAATGAGAACAGCTTTTGGGTT
GATGGTGCAATCTCAAAGATCCTCAAGAAGAATTTAAGACCCAATTCTCC
AGCATTCTTCTTCATTACATTCCATGACTTGACAACTAAAGCTTCTTGCT
CTTCAGTAAAGGCTCTACCTTCGTTAATGTTGGCCATTGATTTCTTTTGG
ACACCTGAGGATTGAATGTGATACACAAAATGTTGTTGAATCCCG
back to top