CX308710

Overview
NameCX308710
Unique NameCX308710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length529
Libraries
Library NameType
AbsLeaSub1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig957 contig Ccv1_Contig957:1..529. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE_MOUSE (UDP-glucose 4-epimerase OS=Mus musculus GN=Gale PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.859e-16
Identity = 40/76 (52.63%), Postives = 45/76 (59.21%), Query Frame = -3
Query:  300 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGY 527
            LGTG G SVL+MV   EKASGKKIP     RR GD    YA+   A  EL W A  G+D MC D W W  +NP G+
Sbjct:  268 LGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAHEELGWTAALGLDRMCEDLWRWQKQNPSGF 343          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE_ERWAM (UDP-glucose 4-epimerase OS=Erwinia amylovora GN=galE PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.734e-16
Identity = 41/75 (54.67%), Postives = 47/75 (62.67%), Query Frame = -3
Query:  303 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYG 527
            LG GKG SVLEMV  FEKASG  +    S RR GD    +A    A++ELNW+   GIDEM  D WNW S+NP G
Sbjct:  261 LGAGKGYSVLEMVKAFEKASGGTVAYQISPRRDGDLAAFWADATLADKELNWRVSRGIDEMMRDTWNWQSQNPQG 335          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE_RAT (UDP-glucose 4-epimerase OS=Rattus norvegicus GN=Gale PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.369e-16
Identity = 40/75 (53.33%), Postives = 44/75 (58.67%), Query Frame = -3
Query:  303 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYG 527
            LGTG G SVL+MV   EKASGKKIP     RR GD    YA+   A  EL W A  G+D MC D W W  +NP G
Sbjct:  268 LGTGTGYSVLQMVQAMEKASGKKIPYKVVARREGDVAACYANPSLAHEELGWTAALGLDRMCEDLWRWQKQNPSG 342          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE_PASHA (UDP-glucose 4-epimerase OS=Pasteurella haemolytica GN=galE PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.161e-15
Identity = 36/77 (46.75%), Postives = 49/77 (63.64%), Query Frame = -3
Query:  297 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGYE 527
            LGTG G SVL+MV  FE A+G  IP     RRPGD  + Y++ +KA  +L W+ + G+++M  D WNW   NP GY+
Sbjct:  261 LGTGTGYSVLDMVKAFEAANGITIPYKVVDRRPGDIAVCYSAPQKALEQLGWETERGLEQMMKDTWNWQKNNPNGYK 337          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE_DICDI (UDP-glucose 4-epimerase OS=Dictyostelium discoideum GN=galE PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.161e-15
Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = -3
Query:  300 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGY 527
            LGTG+G SVLEMV   ++AS K+IP     RR GD    +A   KA +EL WKA +  D+MC D W W S NP GY
Sbjct:  266 LGTGRGYSVLEMVGALKQASHKEIPYQIVSRRKGDVASSFADPSKALKELGWKATHNQDDMCRDAWKWQSLNPNGY 341          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GAL10_PACTA (Bifunctional protein GAL10 OS=Pachysolen tannophilus GN=GAL10 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.161e-15
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = -3
Query:  288 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGYESPN 527
            LGTG G++V E+   F +A GKK+P    GRR GD   + A+ ++A  EL WKA+  I++ C D WNW +KNP+G++  N
Sbjct:  268 LGTGNGSTVFEVFNAFCEAVGKKLPFEVVGRRDGDVLNLTANPKRANTELKWKAQLSINDACKDLWNWTTKNPFGFQINN 347          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE_PASMU (UDP-glucose 4-epimerase OS=Pasteurella multocida GN=galE PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.128e-15
Identity = 38/76 (50.00%), Postives = 46/76 (60.53%), Query Frame = -3
Query:  300 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGY 527
            LGTG G SVL+MV  FEK +  KIP     RRPGD    Y+    A+ ELNW A  G+++M  D W+W  KNP GY
Sbjct:  261 LGTGSGYSVLDMVKAFEKVNDIKIPYKLVDRRPGDIATCYSDPSLAKTELNWTAARGLEQMMKDTWHWQKKNPKGY 336          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE_SALTY (UDP-glucose 4-epimerase OS=Salmonella typhimurium GN=galE PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 7.785e-14
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = -3
Query:  300 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGY 527
            LG G G+SVL++V  F KA GK I    + RR GD    +A   KA+RELNW+    +DEM  D W+W S++P GY
Sbjct:  261 LGAGVGSSVLDVVNAFSKACGKPINYHFAPRRDGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GALE_SALTI (UDP-glucose 4-epimerase OS=Salmonella typhi GN=galE PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 7.785e-14
Identity = 36/76 (47.37%), Postives = 47/76 (61.84%), Query Frame = -3
Query:  300 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGY 527
            LG G G+SVL++V  F KA GK I    + RR GD    +A   KA+RELNW+    +DEM  D W+W S++P GY
Sbjct:  261 LGAGVGSSVLDVVNAFSKACGKPINYHFAPRRDGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336          
BLAST of CX308710 vs. ExPASy Swiss-Prot
Match: GAL10_YEAST (Bifunctional protein GAL10 OS=Saccharomyces cerevisiae GN=GAL10 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 7.785e-14
Identity = 32/77 (41.56%), Postives = 51/77 (66.23%), Query Frame = -3
Query:  297 LGTGKGTSVLEMVAVFEKASGKKIPLVKSGRRPGDAEIVYASTEKAERELNWKAKYGIDEMCGDQWNWASKNPYGYE 527
            LG+GKG++V E+   F KASG  +P   +GRR GD   + A  ++A+REL W+ +  +++ C D W W ++NP+GY+
Sbjct:  280 LGSGKGSTVFEVYHAFCKASGIDLPYKVTGRRAGDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPFGYQ 356          
The following BLAST results are available for this feature:
BLAST of CX308710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
GALE_MOUSE2.859e-1652.63UDP-glucose 4-epimerase OS=Mus musculus GN=Gale PE... [more]
GALE_ERWAM3.734e-1654.67UDP-glucose 4-epimerase OS=Erwinia amylovora GN=ga... [more]
GALE_RAT6.369e-1653.33UDP-glucose 4-epimerase OS=Rattus norvegicus GN=Ga... [more]
GALE_PASHA3.161e-1546.75UDP-glucose 4-epimerase OS=Pasteurella haemolytica... [more]
GALE_DICDI3.161e-1551.32UDP-glucose 4-epimerase OS=Dictyostelium discoideu... [more]
GAL10_PACTA3.161e-1545.00Bifunctional protein GAL10 OS=Pachysolen tannophil... [more]
GALE_PASMU4.128e-1550.00UDP-glucose 4-epimerase OS=Pasteurella multocida G... [more]
GALE_SALTY7.785e-1447.37UDP-glucose 4-epimerase OS=Salmonella typhimurium ... [more]
GALE_SALTI7.785e-1447.37UDP-glucose 4-epimerase OS=Salmonella typhi GN=gal... [more]
GAL10_YEAST7.785e-1441.56Bifunctional protein GAL10 OS=Saccharomyces cerevi... [more]

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Properties
Property NameValue
Genbank descriptionC21003A01Rv AbsLeaSub1 Citrus clementina cDNA clone C21003A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX308710 ID=CX308710; Name=CX308710; organism=Citrus clementina; type=EST; length=529bp
TTTTTTTTTTTTTTTTTTTTTTTGAAGAAAAGCTTTAAATTAATACTGAA
AATTTGAAAACCAATAACAGACAAACCAATGACACTTTTTCCAAATAACG
GATGCCTAATTAAATCTTCTCAGCAGAAGATTGTTCAGGGACCTTTTATT
GTTGTATGATACCACAAGGTTTTTTAGCTTAAAAATCTGGATAATTAAGT
ATGCATGATAAGCACGACACTGTATATAGCGAGAAACTACTGAAGACAAT
CAATAAGGATGACGAATGACAGCTATTAGTTAGTGGAGTTTGGAGATTCG
TAGCCATAAGGGTTCTTGCTGGCCCAATTCCATTGATCCCCGCACATCTC
GTCAATGCCATACTTTGCCTTCCAATTCAATTCGCGTTCTGCCTTTTCTG
TTGATGCATAAACAATCTCAGCGTCCCCAGGTCGCCTCCCAGACTTTACA
AGAGGAATTTTCTTTCCAGAGGCTTTTTCGAATACTGCAACCATCTCCAA
AACTGATGTCCCTTTTCCTGTTCCCAAGC
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